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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0399400 |
| Transcript ID | LotjaGi3g1v0399400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G08510.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510; TrEMBL-Plants: tr|I1MKG3|I1MKG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80104839..80106867) extracted from Lotus japonicus Gifu genome v1.2.
ACCAGCTAAAATAGTGGTTCACCCATGACCCATTAGGAAAAAAAATCTCTCTTAATATCACATCATATTGCATATCCCAT TTACTACTTTTCTCACTTCTCTCCATAGATTTTGTTGCTACACCAAAAATAAAGTGGTTAAGTTCTTTACTTAAATAAAT AAAACACAGTAAATCTATACTCAAAAACGAAAATACAAGTGAGTGTGGCATGAGGCTTCGTTTGTACTTTGTACTATGAC ATGGTATTGTCGGGAACAACAACCTTTAAGTTTTCAACTTTGAGGAACCCAAACTCCAAAAACATTGGAATGAACCAAGT GAAGCAAATCCATGGTTACACACTAAGAACTGGCATAGACCAAACCAAAACCCTCATTGAGAAGCTACTTGAAATCCCAA ACCTGCATTATGCCCAAGCTGTGTTGCACCACTCACCCAACTCCACTGTCTTCCTCTACAACAAGCTCATTCAAGCCTAC TCCTCCCATTCCCAACACCAACACCAATGCTTCTCCCTTTACTCCCAAATGCGCCTTCTTGGTCACTCACCAAACCAATA CACTTTCAACTTTCTCTTCTCTACCTGCACTTCCCTTTCCTCCCTTTCCCTCGGCCAAATGCTCCATGCCCACTTCATCA AATCAGGCTTTGCACCTGATGTCTTTGCCGCCACCGCGTTGCTCGACATGTATGCGAAAGTGGGTACGTTGGAGCTCGCA CGCCGGCTGTTTGATGAAATGCCTGTGAGAGAGGTACCCACCTGGAACGCTATGATGGCGGGGCATGCGAGGTTTGGTGA TGTGGATGGAGCGTTGGAGTTGTTCAGGTTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCTGGTTACT CGAAGAACAAGCAGTATGAGAAGGCTTTGGGGTTGTTCCTGAGGATGGAGTGTGAGGAAGATATTATGCCCAATGCAGTA ACTTTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGGGCACTGGAAATTGGGCAGAGGGTTGAAGCTTATGCGAGGAA AAATGGGTTCTTTAAGAATTTGTATGTGAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTCATATTGATGTTGCTT GGCGGGTATTTAATGAGATTGGTAGCTTGAGAAACCTATGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGA AAATGCGGCAAGGCCCTTGAGCTTTATGATCAAATGCTGGTAATTTCCTTCACATATGTCATACTAAATCATTTTTGGGT GTGATTTTGATCTTTGAGAAGTTCTGAAAGATACTAACACTGATATGTCTCTGTGTCACTGATGGTACCAGAGAGAAGGA ACTACACCTGATGATGTAACATTCGTGGGGCTTCTCTTAGCATGCACCCATGGAGGCATGGTTGAAAAAGGCAGGCATAT CTTCAAGTCAATGAAAACAGACTTCAACATCATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTACTAGGCCGCG CTGGGAAGTTGAGAGAAGCTTATGAGGTCATACAAACTATGCCAATGAAACCAGACTCAGTAATATGGGGGACTCTATTA GGAGCTTGCAGCTTTCATGGTAATGTTGAGCTGGCTGAGATAGCAGCTGAGTCACTATTTACACTTGAGCCTCGGAACCC GGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCGGATCAATGGGACGGAGTTGCAAAGCTCAGAAAGGTGATGA AGGGAAGCCAAATTACAAAATCAGCTGGACATAGTTTCCTTGAAGAGGGAGGTCAGCTGCATAAGTTCATTGTGGAGGAT AGATCACATCCAAAAAGCAATGAAATTTTTGCTTTGCTTGATGGAGTTTATGAAATGTTTAAGTTCAATAGAAGTGCATT TGAGTGCCATTTGGATCTTGATTTGTGCAACTAATCATAGGGAGTAGGTGTAGTTTACACCAACCCCATTTTGGCCAAGC TAATAAGTTGGTATAATCAGTTTATAATA
CDS sequence (LotjaGi3g1v0399400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATTGTCGGGAACAACAACCTTTAAGTTTTCAACTTTGAGGAACCCAAACTCCAAAAACATTGGAATGAACCAAGT GAAGCAAATCCATGGTTACACACTAAGAACTGGCATAGACCAAACCAAAACCCTCATTGAGAAGCTACTTGAAATCCCAA ACCTGCATTATGCCCAAGCTGTGTTGCACCACTCACCCAACTCCACTGTCTTCCTCTACAACAAGCTCATTCAAGCCTAC TCCTCCCATTCCCAACACCAACACCAATGCTTCTCCCTTTACTCCCAAATGCGCCTTCTTGGTCACTCACCAAACCAATA CACTTTCAACTTTCTCTTCTCTACCTGCACTTCCCTTTCCTCCCTTTCCCTCGGCCAAATGCTCCATGCCCACTTCATCA AATCAGGCTTTGCACCTGATGTCTTTGCCGCCACCGCGTTGCTCGACATGTATGCGAAAGTGGGTACGTTGGAGCTCGCA CGCCGGCTGTTTGATGAAATGCCTGTGAGAGAGGTACCCACCTGGAACGCTATGATGGCGGGGCATGCGAGGTTTGGTGA TGTGGATGGAGCGTTGGAGTTGTTCAGGTTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCTGGTTACT CGAAGAACAAGCAGTATGAGAAGGCTTTGGGGTTGTTCCTGAGGATGGAGTGTGAGGAAGATATTATGCCCAATGCAGTA ACTTTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGGGCACTGGAAATTGGGCAGAGGGTTGAAGCTTATGCGAGGAA AAATGGGTTCTTTAAGAATTTGTATGTGAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTCATATTGATGTTGCTT GGCGGGTATTTAATGAGATTGGTAGCTTGAGAAACCTATGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGA AAATGCGGCAAGGCCCTTGAGCTTTATGATCAAATGCTGAGAGAAGGAACTACACCTGATGATGTAACATTCGTGGGGCT TCTCTTAGCATGCACCCATGGAGGCATGGTTGAAAAAGGCAGGCATATCTTCAAGTCAATGAAAACAGACTTCAACATCA TTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTACTAGGCCGCGCTGGGAAGTTGAGAGAAGCTTATGAGGTCATA CAAACTATGCCAATGAAACCAGACTCAGTAATATGGGGGACTCTATTAGGAGCTTGCAGCTTTCATGGTAATGTTGAGCT GGCTGAGATAGCAGCTGAGTCACTATTTACACTTGAGCCTCGGAACCCGGGAAACTATGTCATTCTTTCCAACATTTATG CATCAGCGGATCAATGGGACGGAGTTGCAAAGCTCAGAAAGGTGATGAAGGGAAGCCAAATTACAAAATCAGCTGGACAT AGTTTCCTTGAAGAGGGAGGTCAGCTGCATAAGTTCATTGTGGAGGATAGATCACATCCAAAAAGCAATGAAATTTTTGC TTTGCTTGATGGAGTTTATGAAATGTTTAAGTTCAATAGAAGTGCATTTGAGTGCCATTTGGATCTTGATTTGTGCAACT AA
Protein sequence (LotjaGi3g1v0399400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSGTTTFKFSTLRNPNSKNIGMNQVKQIHGYTLRTGIDQTKTLIEKLLEIPNLHYAQAVLHHSPNSTVFLYNKLIQAY SSHSQHQHQCFSLYSQMRLLGHSPNQYTFNFLFSTCTSLSSLSLGQMLHAHFIKSGFAPDVFAATALLDMYAKVGTLELA RRLFDEMPVREVPTWNAMMAGHARFGDVDGALELFRLMPSRNVVSWTTMISGYSKNKQYEKALGLFLRMECEEDIMPNAV TLASILPACANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGHIDVAWRVFNEIGSLRNLCSWNSMIMGLAVHG KCGKALELYDQMLREGTTPDDVTFVGLLLACTHGGMVEKGRHIFKSMKTDFNIIPKLEHYGCMVDLLGRAGKLREAYEVI QTMPMKPDSVIWGTLLGACSFHGNVELAEIAAESLFTLEPRNPGNYVILSNIYASADQWDGVAKLRKVMKGSQITKSAGH SFLEEGGQLHKFIVEDRSHPKSNEIFALLDGVYEMFKFNRSAFECHLDLDLCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 28 | 170 | 143 | 6.0E-17 | ||
| ProSiteProfiles | 69 | 104 | 36 | 8.934 | ||
| Pfam | 70 | 116 | 47 | 9.0E-8 | ||
| TIGRFAM | 72 | 105 | 34 | 0.0025 | ||
| ProSiteProfiles | 105 | 139 | 35 | 7.059 | ||
| PANTHER | 117 | 198 | 82 | 4.9E-100 | – | |
| ProSiteProfiles | 140 | 170 | 31 | 8.506 | ||
| Pfam | 145 | 169 | 25 | 0.013 | ||
| Gene3D | 171 | 269 | 99 | 4.7E-22 | ||
| ProSiteProfiles | 171 | 205 | 35 | 10.786 | ||
| TIGRFAM | 174 | 204 | 31 | 1.1E-6 | ||
| Pfam | 201 | 250 | 50 | 3.8E-10 | ||
| PANTHER | 203 | 260 | 58 | 4.9E-100 | – | |
| TIGRFAM | 204 | 238 | 35 | 3.5E-8 | ||
| ProSiteProfiles | 206 | 237 | 32 | 6.719 | ||
| ProSiteProfiles | 238 | 272 | 35 | 5.908 | ||
| PANTHER | 264 | 470 | 207 | 4.9E-100 | – | |
| ProSiteProfiles | 273 | 303 | 31 | 7.728 | ||
| Pfam | 278 | 300 | 23 | 0.31 | ||
| Gene3D | 278 | 503 | 226 | 8.0E-39 | ||
| Pfam | 305 | 351 | 47 | 1.2E-9 | ||
| ProSiteProfiles | 305 | 339 | 35 | 11.498 | ||
| TIGRFAM | 308 | 340 | 33 | 3.5E-7 | ||
| ProSiteProfiles | 340 | 370 | 31 | 7.322 | ||
| ProSiteProfiles | 376 | 406 | 31 | 7.432 | ||
| Pfam | 379 | 404 | 26 | 0.018 | ||
| ProSiteProfiles | 408 | 438 | 31 | 5.13 | ||
| ProSiteProfiles | 442 | 476 | 35 | 5.974 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0399400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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