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LotjaGi3g1v0399700.2

Overview

Field Value
Gene ID LotjaGi3g1v0399700
Transcript ID LotjaGi3g1v0399700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ras-related protein, expressed; TAIR: AT1G01200.1 RAB GTPase homolog A3; Swiss-Prot: sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3; TrEMBL-Plants: tr|A0A0R0FK86|A0A0R0FK86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:80128591..80129972) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGCCAGGGAATGAATGGGGTTGAGGCTAAGAAGAGGCAAGACAAAACAGATTATGATGTGGAGGAGAAAATAGATTA TGTGTTCAAGGTGGTGGTGATAGGGGACTCAGCCGTGGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCT GCTTTGACTCTAAGTCCACCATTGGAGTTGAATTCCAGACTAGGACTGTCACTATCAATGGCAAAGTCATCAAAGCCCAG ATCTGGGATACTGCTGGCCAAGAAAGGTTTATCACACCTCTCTCTCTCTCTCTCTCTGACACACACACAAACACACACAC ACACACACACACACACACACACACACACACTTTTGCTTGGGCTGAATATCTTGGTCTACTTTGTTTGTCTCTCATTTGAA CTAAAGGGAGGATATTGAGTTTCAAAGATGGTACCAAGTCAAAGATATAACATTTTACAATGTGATACCATTTTGACTTC AGAAACATATGTTAACAAGAATCACATGATTTTGACTTAAGTACTATAAGTATTTCATTCTCCTTGATTTGGTCTCAAAA TAAGCCACATTAATACTCCAACAAGGGGTTATAATGAGAAAGTGAGCAGCTTTAGTAGATTGTATTGCTTCTCAACATCT AAGCCCATTCAATTGGCCAGATTTCACATACAGATTATACTCAGCTCTGGAAAAAGAAAACTTACTTTTTGAAATCAGGA AAAAGAAAGCTAGAACTCAATGAATTTAAAAGTTCAATAAGTACAATCCCTTAAGGCCATGATTCATCAAGCAAACTGTA TGCATTAATGGCAAAGGAAATGCATTCAAAGATAAAATTTATTGACAAATGTAAGGAAAATACATGATCATTGGAATGCA GATAAATTCTCACACTTTTGACTGTAAATTTTGTTGCTGATATAGGTACAGGGCTGTAACTAGTGCATATTACAGAGGTG CATTAGGGGCCATGCTGGTGTATGACATAACTAAGAGGCAATCCTTTGATCATATTGCGAGGTGGGTTGAGGAACTCCGA GCACACACAGATAGCTCCATTGTGATCATGCTAGTTGGGAACAAAGGTGATCTTGTGGACCTGAGAGTGGTCCCAACTGA AGATGCAGTGGAGTATGCAGAGGAGCAGGGCCTGTTCTTCTCAGAGACTTCAGCTCTCAGTGGTGAGAATGTGGAGAGTG CATTTCTCAAATTGCTAGAAGAGATCAACAGGGTGGTCTGTAAAAAGACATTGGAATGTGGTGTTGGGAAAGGGAATGGT GACAATGATGCTGCCACACTCAAAGGATCAAAGATAGCAATAATCTCAGGTCCTGAATTGGAAATTAGTGAGATGAAGAA GTTGTCTTCATGCTCTTGTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0399700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCCAGGGAATGAATGGGGTTGAGGCTAAGAAGAGGCAAGACAAAACAGATTATGATGTGGAGGAGAAAATAGATTA TGTGTTCAAGGTGGTGGTGATAGGGGACTCAGCCGTGGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCT GCTTTGACTCTAAGTCCACCATTGGAGTTGAATTCCAGACTAGGACTGTCACTATCAATGGCAAAGTCATCAAAGCCCAG ATCTGGGATACTGCTGGCCAAGAAAGGTGGGTTGAGGAACTCCGAGCACACACAGATAGCTCCATTGTGATCATGCTAGT TGGGAACAAAGGTGATCTTGTGGACCTGAGAGTGGTCCCAACTGAAGATGCAGTGGAGTATGCAGAGGAGCAGGGCCTGT TCTTCTCAGAGACTTCAGCTCTCAGTGGTGAGAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAACAGGGTG GTCTGTAAAAAGACATTGGAATGTGGTGTTGGGAAAGGGAATGGTGACAATGATGCTGCCACACTCAAAGGATCAAAGAT AGCAATAATCTCAGGTCCTGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGCTCTTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0399700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSQGMNGVEAKKRQDKTDYDVEEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQ IWDTAGQERWVEELRAHTDSSIVIMLVGNKGDLVDLRVVPTEDAVEYAEEQGLFFSETSALSGENVESAFLKLLEEINRV VCKKTLECGVGKGNGDNDAATLKGSKIAIISGPELEISEMKKLSSCSC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
3 88 86 1.9E-23 –
PANTHER
PTHR24073
18 89 72 1.4E-83 –
PANTHER
PTHR24073:SF1062
18 89 72 1.4E-83 –
SUPERFAMILY
SSF52540
24 160 137 4.36E-40
IPR027417
ProSiteProfiles
PS51419
24 198 175 19.317 –
SMART
SM00173
26 160 135 7.2E-11 –
TIGRFAM
TIGR00231
28 90 63 3.2E-16
IPR005225
SMART
SM00175
29 160 132 5.4E-58 –
PRINTS
PR00449
29 50 22 2.0E-21 –
Pfam
PF00071
30 90 61 1.5E-21
IPR001806
SMART
SM00174
31 156 126 2.1E-8 –
PRINTS
PR00449
52 68 17 2.0E-21 –
PRINTS
PR00449
70 92 23 2.0E-21 –
PANTHER
PTHR24073
88 206 119 1.4E-83 –
PANTHER
PTHR24073:SF1062
88 206 119 1.4E-83 –
Gene3D
G3DSA:3.40.50.300
89 168 80 1.4E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0399700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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