Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0400200 |
| Transcript ID | LotjaGi3g1v0400200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein; TAIR: AT2G46680.1 homeobox 7; Swiss-Prot: sp|P46897|ATHB7_ARATH Homeobox-leucine zipper protein ATHB-7; TrEMBL-Plants: tr|A0A0B2PFE5|A0A0B2PFE5_GLYSO Homeobox-leucine zipper protein ATHB-7; Found in the gene: LotjaGi3g1v0400200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80238792..80242319) extracted from Lotus japonicus Gifu genome v1.2.
AGATAGTGTGTAAATTACAATTGAACCATGAAGCAAGCCACACAAGCCAAGCCAACAAACATGGCTCAATTGGCAATGTT TATCTCAAAAGCTAACCAAAAAAAGTTGAATAGGTAATATTCACAAGGCACAGGTGGAAGAACAATGTATGTTAACAGGA CCAATGAGTTTTGGATATAAAGCCAGCAATTGGGAACTTCATTCTGACCACCATCATAGGAAACTCCAATAAGCTAAGGC CAATTGATACATGCATATCACAAAGGCACACACTTCCAAAACAACAAATCCTCTGTCACCAACAACTTCACCTATAAATA CCCCCTTTAAGTCTCACTGTGAATCCCTCACAAGATGTTGAACACTATGGAATATACTTACTCAGCTGAAGAAACTGCAG ATGCTGAAACTTACACCACTAGCAGCTCAACTCAACCAGTTTCCATGAGAAAGAAGAGAAACAAAAACGCAAGAAGGTTC AGTGATGAACAGATCAAATCATTGGAGTCTATGTTTGAGTCAGAGTCAAGGCTTGAACCTAGAAAGAAGTTGCAATTGGC AAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCAATTTGGTTTCAGAACAAGAGAGCTAGGTGGAAATCAAAGCAACTTG AGCGAGAATACAGCATGCTTAGCTCCAATTACAACAATTTGGCTTCCAAGTATGAAGCACTAAAGAAGGAGAAGCAAACA TTACTAATACAGGTAAACAATCACATAGTACTTACAATTTACAATACAAATTTGTTGTTAAGATCATAGTTTAGCATACA GTTATGTATTAGAAGATTGTTTCTTATTGTAATTTTGATATTCAACAGTTGCAGAAGCTGAGTGATTTAATGAAAACGCC ATTAGAGAAAAGTGAGAGTTCTACACAAGGTAAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGCAACCATCA AATGTGAGCCTGAAGTGAAGCCAAGCCTATCAATGGAAAGATCAGAACATGTACTTGGTGTTCTTTCAGATGATGACACC AGCACTAAGGTGGAGTACATTGGCCTGGAAGATGATGAACATGGCCTTCTGAATTTTGCTGATCAAGCAGATGGCTCATT GACATCACCAGAAGATTGGGGCGGTTTTGGCTCCAATGATTTCTTAGGCCACTCAAGCAGTGATTATCAATGGTGGGACT TCTGGTCCTAAAATGAAACATAACATTCAAAATTGCTTCGAATTTGGATTTCCTACAGTTGAGTTCCCCCTAAATTCATA ACGGTTAGAGCTCCATAGCCGTTTGACCATAATCGGACGACTCATATTTAAAGAAATCAGTAGTACATCTAATGTCGGAG TTTTAAATCTATCCATATAATGTTAATCGGACGACTATTGAGTATTGAGCCCTGACTGAAGTGAATTTAGGAAAATTCAA CTGCAGCGAATGTAAGCATTATATGATGTTACAACCATTCTCTTGTTGAAGAAGGTGGCAGGGTAAGATGAAGGGAAATA GGAGAGGGGACATTTATTTTCTGTACACACTCATTAGTTTGTAGGAAATGAGTTTACTTGTTCTTGTCTCTTCAAAAGGA GTTCCATCTCTAGGCTTCAGGTGATGACCAAAACTCTGCTAATGAATTGCAATGTGCTACTGCATTGAGTTCAGATGAAA CCAAAAGTCCAAAACTGCAGAATTGCATCACCAAAAGGAGATAGGATACTAGAGAAATAAGGATGCCAAGGAGGCAAGAA ATTGTAAACTAAAATCTAAAATAAACGGTGAGCATGAAAGAGATCAAGAATCCTTCACAATTGGCATGTGATTAACCTAT CAGAGCTATACACACCCATTGGAAATACAAATAATCCATAGTTGGTAAATGGTAATCAATTAGTTTAGTAATTACTTTTT AAGAATTTGCTTCTTTAATGCACATAATGCTTTGTTTGGAAATATGAAAATTCACACCTCATATGATCCTAGAAAGTTGC AAATGCTCATTAACCAGGATTATATACATATACATCAGTAAACAAACTTGATTTTTTGAAAACATCATGAAGCACAATAT TAGATAATACTAGCTAAAGAAAAATATCTTATAGCAAAGGTGTATGTATGGCTGTACCACAAATTCCATAAATTTCTGTG GAAGGCCAAATTATTCGAACACTTAGTTTGCCTGTCCAGTTTGGTGCTCCAAAATCTTAATTGATGTCTCTTGGTTTTAA AGAGTTCCTAGTCTCATGTACAATAATCTCTTGGCTCTTAAATATAGCACTTGCCTCATTCATAAAATTGGCAGTGCTAA GAGTTTATTGACAAACAACCTCTTCAAAATTGGATTTTACACCACATTGCCCATAAACTTATCTTTCTTATTGACGGACA CTGTTGACAAATTTGACAATGGAGTATTTTGGTATTGCTCTGGGGGATGCACTTGTCGATTTTGCCTCCCTTAACCTCCG CAAGAGAAATTTGGATGGTTTCTTCAAGTAAGATAGTAGTTGTTGGACTAGATTATTTTGTGGTTTCTTCATCCATTTTT TCCTCCTCCACAAGTGGTTTTGGAACTGGCTCTGGCACAGATACTTGCTCTTGTTGAGCACAGGCTGCAGCTGCCTTCTC CCTTCGTCTCCTTCTCTTTTAGTTTGCTCGATTCCACATTGTTGTCCTACTGTCTCCATATTAAATAACAAAGTACTAGG AGCAATTGTACCTCACATAACCCATTAGAAAAAAAGGATGAAAACGAAAGTCACAAAATCAATAGTAAAAATAAAAATGG TAGCTCTCAATCAATAGATTGAATAATTCGAAAACCATGAATTCAATTCAAATGGAGCAAACATAATTAAGTATCGTTCT TACTCCTAAGAAAACGGCAACCCTAATCGATCTTCTCACAAATTCGCTTATAAAAAAAAATCCTCACCCAAATTCCTAAT TCCTACTAATTCTCCAATTGAACTAGAATTAGTGTGATGCTCAGAGGCCTTTTGAACATTCAACATAGAGTGAAGACACA ATGAAAGAAGAAAACTCATATACTAGAGCAAAATATTATGAATATAGTAGTGACCAGCTCCATTATTCATCCCCTAGTAC AAGAAACATCCTTTACTTTTTATAAATATTCTAAACACGTTATAGAAATATGAGGAAAGGAAGTTTAATTTTGTGGTTCT CTCTATGAAGAGTAGAAATAGCATGAAATCAACAGAAGTTAATAAGCAAAGCCTTGAGTATTGTTAGTGAAATTTGTCTT TGTACTTGTCGACATCGAAGAGAATAAGACTTTTTCTCTCCACATGGTTGGCTGCGTTTATAAATGGTTTTAAAGGTTCA ACATACCACGTGACGCTGGACTATTAAAAGAGAGAATAAATGTTGTATGATCCAAGTTTTTTTAAATTCCTGTTCTGGTA AATTTATGGAAGCCTGTAGTTTGTACCTTGTTTAGTTTATCTGAAGTGAAGTGTGATATCAGTTGGCTGATGTTGAGAAC TTATGGAA
CDS sequence (LotjaGi3g1v0400200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAACACTATGGAATATACTTACTCAGCTGAAGAAACTGCAGATGCTGAAACTTACACCACTAGCAGCTCAACTCA ACCAGTTTCCATGAGAAAGAAGAGAAACAAAAACGCAAGAAGGTTCAGTGATGAACAGATCAAATCATTGGAGTCTATGT TTGAGTCAGAGTCAAGGCTTGAACCTAGAAAGAAGTTGCAATTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCA ATTTGGTTTCAGAACAAGAGAGCTAGGTGGAAATCAAAGCAACTTGAGCGAGAATACAGCATGCTTAGCTCCAATTACAA CAATTTGGCTTCCAAGTATGAAGCACTAAAGAAGGAGAAGCAAACATTACTAATACAGTTGCAGAAGCTGAGTGATTTAA TGAAAACGCCATTAGAGAAAAGTGAGAGTTCTACACAAGGTAAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGA GCAACCATCAAATGTGAGCCTGAAGTGAAGCCAAGCCTATCAATGGAAAGATCAGAACATGTACTTGGTGTTCTTTCAGA TGATGACACCAGCACTAAGGTGGAGTACATTGGCCTGGAAGATGATGAACATGGCCTTCTGAATTTTGCTGATCAAGCAG ATGGCTCATTGACATCACCAGAAGATTGGGGCGGTTTTGGCTCCAATGATTTCTTAGGCCACTCAAGCAGTGATTATCAA TGGTGGGACTTCTGGTCCTAA
Protein sequence (LotjaGi3g1v0400200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNTMEYTYSAEETADAETYTTSSSTQPVSMRKKRNKNARRFSDEQIKSLESMFESESRLEPRKKLQLARELGLQPRQVA IWFQNKRARWKSKQLEREYSMLSSNYNNLASKYEALKKEKQTLLIQLQKLSDLMKTPLEKSESSTQGKAANSMDSESENG ATIKCEPEVKPSLSMERSEHVLGVLSDDDTSTKVEYIGLEDDEHGLLNFADQADGSLTSPEDWGGFGSNDFLGHSSSDYQ WWDFWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 1 | 40 | 40 | - | – | |
| SUPERFAMILY | 18 | 95 | 78 | 1.42E-19 | ||
| PANTHER | 20 | 245 | 226 | 1.5E-86 | – | |
| PANTHER | 20 | 245 | 226 | 1.5E-86 | – | |
| Gene3D | 21 | 104 | 84 | 3.6E-18 | – | |
| SMART | 31 | 97 | 67 | 7.8E-16 | ||
| CDD | 32 | 94 | 63 | 8.43405E-16 | ||
| ProSiteProfiles | 33 | 93 | 61 | 17.864 | ||
| Pfam | 40 | 91 | 52 | 2.6E-16 | ||
| PRINTS | 64 | 73 | 10 | 1.0E-5 | ||
| ProSitePatterns | 68 | 91 | 24 | - | ||
| PRINTS | 73 | 89 | 17 | 1.0E-5 | ||
| Coils | 92 | 133 | 42 | - | – | |
| Pfam | 93 | 134 | 42 | 3.3E-13 | ||
| MobiDBLite | 136 | 176 | 41 | - | – | |
| MobiDBLite | 137 | 159 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0400200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…