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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0401600 |
| Transcript ID | LotjaGi3g1v0401600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|I3T6C4|I3T6C4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0401600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80411825..80416597) extracted from Lotus japonicus Gifu genome v1.2.
CTGATCCGAACCGGGCTCACAACAGTCATCCTCGGACACAGGGAGCAGAATATAAATACATTACTACCGAATACTCGAAC TCGAACCCTTGTTGTTCTGAGTTTGGAATCTGAACTACAACCTAAGCCTGAACCACATACACACCAACAACAACAACAAA TCTAGCACCAAATTTTGTTTTGTTTTGTTTGGTAAATTGTTTATTCAACACTGCTAGCAAAGTCTCCTTAATTTATTCTT CTCTCTTTTTTTTTATGTCGTTTTGCTTTGTTTCTTCATTCCAGAAACCTCGTCTACACCTTAAAGATCAAACACTTTGA TCTTCATTTCACAAGTGTGCAACCCAGGTTTTATTTCTCTCTCTTTCTGCTCAAGTTCTTGTCTTTTTCTCGTTTTGTTT CCCTAGAGGGGTTTTGGGACTTGTTTCCATTTGGGTTTTGGGGTTTGTTAATTGTTGATTGCGGTGATTTCGCTCAAATT AGGGTTTTTTTTTTAACAGGGCGGAGAAGATGCAGCAGACACCGCAAATGATTCCTATGATGCCTTCATTCCCATCTCAA AACATTACCACCGAACAGATTCAAAAAGTATGCTCTTTTATTGTTTCAGCTCCACCGTTTCCCTTTTTTAAGTTATGAAC TATAGTTCAAGGTTGTCATGGTTTCTTCTGGATATTATTGCTTTTGTTGTTGTTTTTATCATGGTTAGCGTCATCATCAT AATGATGTGGATATTGACAGGTGATTGTTGTTGTAACCGGTAACCGAAGAGAGGATGAATTGAATTTATGATAATCTGTA ATAAATTTGATCATGTAGTCTGGAAAAAAGTGTTCTTATTTGCTGACCTTTTTTTTATTACCCATCATGGTAAGAGCACC TAAGTTCTACCACCTGGGTTTGCAAAAAGTCAAGCTTTTTTCTAGTTATGAGTGAACATATATTTGTACTGGATTGATTG AACCAGAAACTCACAGTAAGTGAATGTAAATATGATGGAGTAAGTCATTGATTGTGATCTAATTAGGGGTAATGTTGTCA ATCCAGTTCCCGGTGCGTAAAATGGGATAGTGGGTACTGGGTTAGTTAATTTTTGTCTTGTTACTTATACCATATATACA TATATTATATACTAAATCAACGATAGATATTTCTTGAAATTCATAACACCCCAACGTTTAAATTTTGAGGGCATTTTCAG AAAACTGGAGCCTTCTCTACCCCGCCTGTATTTCGTGTGAAAGGCTGCAATTTTGGCCGCGATCCCATCCGCGGCAGCCG CGATGGAGAACTGGGATGGGATGGGGGTATTTGTCCCAATACATGGTCGGGATGGGAAACCGGGATCTCACGGGATCCTG CCGGGATTGACTACATAGATTAGGGGAAATGATTTTCATGTGGGGCTTCTGGTAAGAGCGACATCTTTCTCCACTAATTC ATGAAGTGCTTCTAAACAACAAAACAATTTTAATCCATTTCTGCTTTTAACTTTTGATGTACTCAGTGTTAGAATACTAT CTAGAATTTTCCGATGCACCAAAAAAAAAAGAATACTATCTAGAACTAGAAACATATCCATTTTGGTGCTTCTAAAGTGA GTTCTCACCTTCGAAAGGAAAACAACGTATCTCAGCCTATATGGTTTGACCTATAATTTTCTTCTGTCTTCTTTATTTTC TTTTTTTCTCTTCAATCTTTGTGGATATTTAGCGCTTTCGGAAATGTTTTATGGTGTATGCCTGGATTGGAGCTCAACAC GATCAAATTAAGATTATCTTAACTTTTAAAGAAGAAAGTTAGGTTATCTAATTCTTCTCCTGCATTTGAGGGATTTGTGA GATGAATAAGTGGTGACAGCATTTTTGGGGCGTTGTGATCCAGATCCACGGATCCTTTAACTTAAAGTTTATTAATATTA GTTTGATCATACCTGTTGATTTACCATTGTAAGATTTGGGTCCTAAGTAAACAAAATGAGGTGGCGTCGGTTGGACTATG CAAGTCATGTGCATAATTTGAGATAGGGTGGGTGATTTGTATTTTTCATTGTCAAACAAGTTGTTATCATGTGGCCTTGC AGCACAGGATCTGGCATCACTAGAATCCTCCATGATTGAATTCTAGATGTTCAATGTCATCAACCTCAAAACTAATAATA TTGATGTGCGTTGAACTTCTCTTTAGTCTACGTAATCCATAAGAAATGTTTTTTCATGAAATTGTGCATCAATCCTTTAT GAGGACATTACCATGATACAACTTTAAGTCACCTCAGTGTTGTCTATAGTGCACTATAGCGGTGCAGTTCAGCGCCGTAG TGGCCGTTTCCGGCTCCTAGTTGTTGCGTAGTGGTGCAGTTGAGTGTAGCGGCTGTTGAGGCCGCTAAAGCAGGGGAAAT AGCAGCTATAGTGGTGCTATTTGGCTGCTATGTGGTGGAATTGATAAAAACCCCAAAACAACCCACAAAAAGTCCAAGTT AGGGATTTGTGGAGAGGTATTTCAGGGGTTTTGGTTTGGAAACATACTGAAAAGGGTTAGTTTTAGGAGGATGAGGAGGA AGTGATATAGAACTTTCATGTTTTTAGGCAGTTTAGTTTGGGAAATAGAGTCTTAAACCTCTTGGTTACGTTGAGTTTTC TTGTAATAGTATGTGTTGTTTATGACTTCTATGACTTAGTAGTTATTAATGTTAATTATGATTGCCATGAATTGTGAGTG TTTTTAATCATTTATATGTATATAGTTATATTATATAAACTATACCAAAAATTCAGCATAGCGGCCATCCCGCTATGCGC TATACCGCAATAGCTTTTTTGTGGTCAGCGCCGCTACCCGAGATTGACAACACTGAGTCACCTTAGGTTTCTTTTCTCAT CATCTATATATCTACTTTTCATAATATTATTGCACACAATTAAAACGACATGAAAAGTTAAACCCAAATAGGCAGCAAGA ATCTTTGTTATTTAATTTGAAATCCCTCTCATGGCTCATAATGCAGTTTCTTGATGAGAACAAGAAGCTGATTCTTGCAA TATTGGACAATCAAAATCTTGGGAAACTTGCAGAATGTGCCCAGTAAGTGACCTCTAAATTATGTCTGCATCTTTTTGTT ATTGTTGATGGTTGTTCTGACTTCAAATTATTAGCTGATTGTCTTGTTATGCTCCGATCTCATACCATTTTACCCGTGTA GAATGGGTGGAACTATTAGCACTCCTAATTGCCCATTCACTTTACTCACGAACGACATTTAATTGACAATTTTACTTATT ATATTATTTATTATGGCCTGTATACTAAGAACTGAATTCTTTATAAGTCCTTTCCTAGTTGCAAACAATTATCTTCTTAG GTGTCTTTGTGTACTTGGCTGAGGTTTTATCTCTTATGCTATAGACTGATGGTTGCGTGTTGATTTGATGTGTCAGATAC CAAGCTCAGCTTCAAAAGAATTTGATGTACTTAGCTGCAATTGCTGATTCACAGCCACAAACACCTGCCATGCCTCCACA GGTAAAATAAGGCATAGCTGGTCCCTTTGGAAGTCCCATCAGTTACCAATAACATCAATAACATTGGTCTTATTGCCTTG TATTGAATGCTTGTAGATGGCGCCACATCCTGCGATGCAACAAGGGTTCTACATGCAACATCCTCAGGCTGCAGCAATGG CTCAGCAACAAGGAATGTTCCCCCAAAAAATGCCAATGCAATTTGGCAATCCGCATCAAATGCAGGATCAGCAGCAACAG CAGCAGCAGCAGCAGCTACACCAGCAGGCCATCCAAGGGCAGATGGGGCTGAGACCTGGAGGGATGAATAACGGCATGCA TCCAATGCACAGCAACGAGGCTGCTCATGGAGGCGGCAGCAGTGGCGGTCCACCTTCGTCTGCCGGTCCGAATGATGCCC GTGGTGGAAACAAGCAAGATGCTTCTGAGACTGGGACAGCTGGTGGAGACGGCCAAGGAAGCTCTGCTGCGGCGCACAAC AGTGGAGATGGTGAATCTTCTTATCTTAAGGGTTCAGAAGAGGCAAAGTGACATGTTTATGTGTTTGTTTCAAAGATACA TATGACTGTTGATATTAGGTTTTTCTTAAGGATAGGGCTAGTGTTATCTGATGACCTTTGATAGGTCGACCGAAGAACAA AAGAGCTTTTATTCATAGCCAGATAGGTAGGTGTTGACTTGTTGTGTTGTTAGCGTTTTGGCATGCAGTAAGTTTGCTTC AACTGAAACTTCTGGTGCCAAAATATGATGTACTCAGTACTGGAAGAGGTGAAAGCGTGTAGTCTACACTACGTTGGCGT TCAAATTCGTGATCAACTTAAGGATCTCTTTGGTTTGGAATAATGCTTTATGACTCCACTCACTAGTTGTTACAAAAATG CTACCTTGTTTTCATTGTGTTTTTTTATTTTCAAAGATTGTTCAGGAAACAATGAGAACATTTTGTTCTGTTCTCCTTAC TATTTCCTGCACAAATGAAAATAAGGTGATATTTTTGTAATTATTATCTAAAACAGAGAATGAAAATGAAAAAAAAATTG CTTTCTCAAATTGAACAGGTCTTCATTTATTTGTTGGTTCTCACAATTTTTTCTGAGGAACTTGCTGTCTTCATATATTA GAAAGTCTTCACCTTAGGGGCAATTTAATTAGAATTGGGCATCAGAGTTGAAGCAGGAATTGCAGAAGATGAATTCAAGG TCTAGCTGTAGTCTGTATCTGTTCTTCTTTACGACAGGAACTTGCAATTCCAG
CDS sequence (LotjaGi3g1v0401600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGACACCGCAAATGATTCCTATGATGCCTTCATTCCCATCTCAAAACATTACCACCGAACAGATTCAAAAATT TCTTGATGAGAACAAGAAGCTGATTCTTGCAATATTGGACAATCAAAATCTTGGGAAACTTGCAGAATGTGCCCAATACC AAGCTCAGCTTCAAAAGAATTTGATGTACTTAGCTGCAATTGCTGATTCACAGCCACAAACACCTGCCATGCCTCCACAG ATGGCGCCACATCCTGCGATGCAACAAGGGTTCTACATGCAACATCCTCAGGCTGCAGCAATGGCTCAGCAACAAGGAAT GTTCCCCCAAAAAATGCCAATGCAATTTGGCAATCCGCATCAAATGCAGGATCAGCAGCAACAGCAGCAGCAGCAGCAGC TACACCAGCAGGCCATCCAAGGGCAGATGGGGCTGAGACCTGGAGGGATGAATAACGGCATGCATCCAATGCACAGCAAC GAGGCTGCTCATGGAGGCGGCAGCAGTGGCGGTCCACCTTCGTCTGCCGGTCCGAATGATGCCCGTGGTGGAAACAAGCA AGATGCTTCTGAGACTGGGACAGCTGGTGGAGACGGCCAAGGAAGCTCTGCTGCGGCGCACAACAGTGGAGATGGTGAAT CTTCTTATCTTAAGGGTTCAGAAGAGGCAAAGTGA
Protein sequence (LotjaGi3g1v0401600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQTPQMIPMMPSFPSQNITTEQIQKFLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADSQPQTPAMPPQ MAPHPAMQQGFYMQHPQAAAMAQQQGMFPQKMPMQFGNPHQMQDQQQQQQQQQLHQQAIQGQMGLRPGGMNNGMHPMHSN EAAHGGGSSGGPPSSAGPNDARGGNKQDASETGTAGGDGQGSSAAAHNSGDGESSYLKGSEEAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 223 | 222 | 4.7E-52 | – | |
| PANTHER | 2 | 223 | 222 | 4.7E-52 | – | |
| Pfam | 17 | 74 | 58 | 8.8E-23 | ||
| MobiDBLite | 110 | 140 | 31 | - | – | |
| MobiDBLite | 110 | 224 | 115 | - | – | |
| MobiDBLite | 185 | 215 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. |
Expression pattern of LotjaGi3g1v0401600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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