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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0401600 |
| Transcript ID | LotjaGi3g1v0401600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|I3T6C4|I3T6C4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0401600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80412547..80416088) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGCAGACACCGCAAATGATTCCTATGATGCCTTCATTCCCATCTCAAAACATTACCACCGAACAGATTCAAAAAGT ATGCTCTTTTATTGTTTCAGCTCCACCGTTTCCCTTTTTTAAGTTATGAACTATAGTTCAAGGTTGTCATGGTTTCTTCT GGATATTATTGCTTTTGTTGTTGTTTTTATCATGGTTAGCGTCATCATCATAATGATGTGGATATTGACAGGTGATTGTT GTTGTAACCGGTAACCGAAGAGAGGATGAATTGAATTTATGATAATCTGTAATAAATTTGATCATGTAGTCTGGAAAAAA GTGTTCTTATTTGCTGACCTTTTTTTTATTACCCATCATGGTAAGAGCACCTAAGTTCTACCACCTGGGTTTGCAAAAAG TCAAGCTTTTTTCTAGTTATGAGTGAACATATATTTGTACTGGATTGATTGAACCAGAAACTCACAGTAAGTGAATGTAA ATATGATGGAGTAAGTCATTGATTGTGATCTAATTAGGGGTAATGTTGTCAATCCAGTTCCCGGTGCGTAAAATGGGATA GTGGGTACTGGGTTAGTTAATTTTTGTCTTGTTACTTATACCATATATACATATATTATATACTAAATCAACGATAGATA TTTCTTGAAATTCATAACACCCCAACGTTTAAATTTTGAGGGCATTTTCAGAAAACTGGAGCCTTCTCTACCCCGCCTGT ATTTCGTGTGAAAGGCTGCAATTTTGGCCGCGATCCCATCCGCGGCAGCCGCGATGGAGAACTGGGATGGGATGGGGGTA TTTGTCCCAATACATGGTCGGGATGGGAAACCGGGATCTCACGGGATCCTGCCGGGATTGACTACATAGATTAGGGGAAA TGATTTTCATGTGGGGCTTCTGGTAAGAGCGACATCTTTCTCCACTAATTCATGAAGTGCTTCTAAACAACAAAACAATT TTAATCCATTTCTGCTTTTAACTTTTGATGTACTCAGTGTTAGAATACTATCTAGAATTTTCCGATGCACCAAAAAAAAA AGAATACTATCTAGAACTAGAAACATATCCATTTTGGTGCTTCTAAAGTGAGTTCTCACCTTCGAAAGGAAAACAACGTA TCTCAGCCTATATGGTTTGACCTATAATTTTCTTCTGTCTTCTTTATTTTCTTTTTTTCTCTTCAATCTTTGTGGATATT TAGCGCTTTCGGAAATGTTTTATGGTGTATGCCTGGATTGGAGCTCAACACGATCAAATTAAGATTATCTTAACTTTTAA AGAAGAAAGTTAGGTTATCTAATTCTTCTCCTGCATTTGAGGGATTTGTGAGATGAATAAGTGGTGACAGCATTTTTGGG GCGTTGTGATCCAGATCCACGGATCCTTTAACTTAAAGTTTATTAATATTAGTTTGATCATACCTGTTGATTTACCATTG TAAGATTTGGGTCCTAAGTAAACAAAATGAGGTGGCGTCGGTTGGACTATGCAAGTCATGTGCATAATTTGAGATAGGGT GGGTGATTTGTATTTTTCATTGTCAAACAAGTTGTTATCATGTGGCCTTGCAGCACAGGATCTGGCATCACTAGAATCCT CCATGATTGAATTCTAGATGTTCAATGTCATCAACCTCAAAACTAATAATATTGATGTGCGTTGAACTTCTCTTTAGTCT ACGTAATCCATAAGAAATGTTTTTTCATGAAATTGTGCATCAATCCTTTATGAGGACATTACCATGATACAACTTTAAGT CACCTCAGTGTTGTCTATAGTGCACTATAGCGGTGCAGTTCAGCGCCGTAGTGGCCGTTTCCGGCTCCTAGTTGTTGCGT AGTGGTGCAGTTGAGTGTAGCGGCTGTTGAGGCCGCTAAAGCAGGGGAAATAGCAGCTATAGTGGTGCTATTTGGCTGCT ATGTGGTGGAATTGATAAAAACCCCAAAACAACCCACAAAAAGTCCAAGTTAGGGATTTGTGGAGAGGTATTTCAGGGGT TTTGGTTTGGAAACATACTGAAAAGGGTTAGTTTTAGGAGGATGAGGAGGAAGTGATATAGAACTTTCATGTTTTTAGGC AGTTTAGTTTGGGAAATAGAGTCTTAAACCTCTTGGTTACGTTGAGTTTTCTTGTAATAGTATGTGTTGTTTATGACTTC TATGACTTAGTAGTTATTAATGTTAATTATGATTGCCATGAATTGTGAGTGTTTTTAATCATTTATATGTATATAGTTAT ATTATATAAACTATACCAAAAATTCAGCATAGCGGCCATCCCGCTATGCGCTATACCGCAATAGCTTTTTTGTGGTCAGC GCCGCTACCCGAGATTGACAACACTGAGTCACCTTAGGTTTCTTTTCTCATCATCTATATATCTACTTTTCATAATATTA TTGCACACAATTAAAACGACATGAAAAGTTAAACCCAAATAGGCAGCAAGAATCTTTGTTATTTAATTTGAAATCCCTCT CATGGCTCATAATGCAGTTTCTTGATGAGAACAAGAAGCTGATTCTTGCAATATTGGACAATCAAAATCTTGGGAAACTT GCAGAATGTGCCCAGTAAGTGACCTCTAAATTATGTCTGCATCTTTTTGTTATTGTTGATGGTTGTTCTGACTTCAAATT ATTAGCTGATTGTCTTGTTATGCTCCGATCTCATACCATTTTACCCGTGTAGAATGGGTGGAACTATTAGCACTCCTAAT TGCCCATTCACTTTACTCACGAACGACATTTAATTGACAATTTTACTTATTATATTATTTATTATGGCCTGTATACTAAG AACTGAATTCTTTATAAGTCCTTTCCTAGTTGCAAACAATTATCTTCTTAGGTGTCTTTGTGTACTTGGCTGAGGTTTTA TCTCTTATGCTATAGACTGATGGTTGCGTGTTGATTTGATGTGTCAGATACCAAGCTCAGCTTCAAAAGAATTTGATGTA CTTAGCTGCAATTGCTGATTCACAGCCACAAACACCTGCCATGCCTCCACAGGTAAAATAAGGCATAGCTGGTCCCTTTG GAAGTCCCATCAGTTACCAATAACATCAATAACATTGGTCTTATTGCCTTGTATTGAATGCTTGTAGATGGCGCCACATC CTGCGATGCAACAAGGGTTCTACATGCAACATCCTCAGGCTGCAGCAATGGCTCAGCAACAAGGAATGTTCCCCCAAAAA ATGCCAATGCAATTTGGCAATCCGCATCAAATGCAGGATCAGCAGCAACAGCAGCAGCAGCAGCAGCTACACCAGCAGGC CATCCAAGGGCAGATGGGGCTGAGACCTGGAGGGATGAATAACGGCATGCATCCAATGCACAGCAACGAGGCTGCTCATG GAGGCGGCAGCAGTGGCGGTCCACCTTCGTCTGCCGGTCCGAATGATGCCCGTGGTGGAAACAAGCAAGATGCTTCTGAG ACTGGGACAGCTGGTGGAGACGGCCAAGGAAGCTCTGCTGCGGCGCACAACAGTGGAGATGGTGAATCTTCTTATCTTAA GGGTTCAGAAGAGGCAAAGTGA
CDS sequence (LotjaGi3g1v0401600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGACACCGCAAATGATTCCTATGATGCCTTCATTCCCATCTCAAAACATTACCACCGAACAGATTCAAAAATT TCTTGATGAGAACAAGAAGCTGATTCTTGCAATATTGGACAATCAAAATCTTGGGAAACTTGCAGAATGTGCCCAATACC AAGCTCAGCTTCAAAAGAATTTGATGTACTTAGCTGCAATTGCTGATTCACAGCCACAAACACCTGCCATGCCTCCACAG ATGGCGCCACATCCTGCGATGCAACAAGGGTTCTACATGCAACATCCTCAGGCTGCAGCAATGGCTCAGCAACAAGGAAT GTTCCCCCAAAAAATGCCAATGCAATTTGGCAATCCGCATCAAATGCAGGATCAGCAGCAACAGCAGCAGCAGCAGCAGC TACACCAGCAGGCCATCCAAGGGCAGATGGGGCTGAGACCTGGAGGGATGAATAACGGCATGCATCCAATGCACAGCAAC GAGGCTGCTCATGGAGGCGGCAGCAGTGGCGGTCCACCTTCGTCTGCCGGTCCGAATGATGCCCGTGGTGGAAACAAGCA AGATGCTTCTGAGACTGGGACAGCTGGTGGAGACGGCCAAGGAAGCTCTGCTGCGGCGCACAACAGTGGAGATGGTGAAT CTTCTTATCTTAAGGGTTCAGAAGAGGCAAAGTGA
Protein sequence (LotjaGi3g1v0401600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQTPQMIPMMPSFPSQNITTEQIQKFLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADSQPQTPAMPPQ MAPHPAMQQGFYMQHPQAAAMAQQQGMFPQKMPMQFGNPHQMQDQQQQQQQQQLHQQAIQGQMGLRPGGMNNGMHPMHSN EAAHGGGSSGGPPSSAGPNDARGGNKQDASETGTAGGDGQGSSAAAHNSGDGESSYLKGSEEAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 223 | 222 | 4.7E-52 | – | |
| PANTHER | 2 | 223 | 222 | 4.7E-52 | – | |
| Pfam | 17 | 74 | 58 | 8.8E-23 | ||
| MobiDBLite | 110 | 140 | 31 | - | – | |
| MobiDBLite | 110 | 224 | 115 | - | – | |
| MobiDBLite | 185 | 215 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. |
Expression pattern of LotjaGi3g1v0401600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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