Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0403200 |
| Transcript ID | LotjaGi3g1v0403200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Starch synthase, chloroplastic/amyloplastic; TAIR: AT1G32900.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|O82627|SSG1_ANTMA Granule-bound starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr|B2CP02|B2CP02_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi3g1v0403200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80602739..80607300) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCACAAAGCTTCTCAAATCGTTGAAAGCCTCTAATAAGGTTTGAGGTGTCTAAGCGATGTAGTACACAAGGATCATT CCATGGTTGCCACGTGGAAGGAAAATCCAAAAGCTTGTCATTTCACGAGCAGCACACTGCTACAAATTGCATCGTTTTGA GACAAAACTCAATAATTCTACTCGTCAATGCTTCATGAACTTGCTGGTTAATCCTTGAAGCTTAGTTCATCTTCCAGACA CTCTTTCTCTCCCAAACTCTGCGTGCATCATTGGCTGGTTAGTTAGTTTTAATTCCAAATTTGAATATTTTTTTCCCATT AAATTTAGACTTACTATTTTGATGTGTCGTTTTCTTGTAAACATGCTTTTAAGCTAGTTTTATGAGAAACATGGTTTCTT ATCTTAGCATTCAATATTATCTGCTAGCTAGGAACTTTGAACTACTCTGATTAAACCCTCAAGTATAAAGGGCATGCCTA GTTTTCACTTTTTCATTTTTAGTTTTAATTACAACCCTCACATTATTTTTGAAGTTATAGTAGAAACAATATCAAGAACT ATAAAAATTTAAGATTAAAGTAAAATTAGATGGTAGCTGAAACTGGAAATGGAAACAGAAGGAAAGAGTCCATGAATGTT GGAGTCAGTCTAATTATCAAAATCTTTGTTCTTCAGAGTTCAGAAGTATCAAAGATGGCGGCAGTGGCTGCTTCAAGTAA CTTAGTGTCCAGCAGTTCTTACATCCACCACAGATCAATTCTCTCATATGAGTCTAAAGCTGCATCGACGGGACTTCGAT CTCTAAGGCAGACAAATACTCACAATGGACTGAGAATTTTGAACCTGGTGGATGAGCTGTTAAACAGAACCCCAATTCAA GTTAAGGCAGTGCAAGCTAGGAGGAAGGGTCTTCAAGGCAAGAATGTCAGGCCAACAGGTGTCATAATTTGTGGCATGAA TTTGATCTTCCTCGGGACGGAGGTTGGTCCGTGGAGCAAAACTGGTGGCTTAGGAGATGTTTTAGGAGGTCTGCCGCCAG CATTAGCAGTAAGCTTACTGTTATTGTTCTTTCTTTCCTCTTTAATTAGCTAGCGTAATGCTACCAACACTGTTTTTAAC ACACCTTAACACACTGTTTTATTAGTTGAAATTCGTGGAATCTACCAAGTTATATGGATCCCACGCAATCCGGTCACATG AATTTCAACCAATAAAAGAGATAGTGTTGTAAGGAGAGTGATAAAGTGACTGGTATTAGCATTCCTCATAGCTAAATACT AATTGGCATATTTGGGGTTCAGTGAGAGCAAGAGTTCCTCTAATTAATCCTTCTCTAGGCTAATGGGCATAGAGTTATGA CCATAGCTCCACGCTATGACCAGTACAAAGATGCATGGGATACAAGTGTAACAATTGAGGTATGTCAGTTGACAAAATGA GAAATCAGGTTTTCATTTTTATAGAAGAGGTTTTCACCCAATTGTGTTCTTCTATAGTTAAATGCATTGTAAATCTGCTT ATTGCAGGTGAAAGTAGGAGACAAAACAGAAAAAGTTGGCTTCTTCCACTGCCATAAGAGAGGAGTTGATCGTGTATTTG TAGATCACCCTATTTTTCTTGAAAAGGTTGGAGTATTACAAGTTTTTCAGCAATACTCTCACTGTTTTTCAACTACTCAC TAGTGTCTGAACTTTAAGGTCTGGGGGAAAAGTGGAACCAAACTTTACGGGCCTACTGCAGGAGAGGATTACCAAGACAA TCAACTACGTTTTAGCCTGTTCTGCCAGGTTCGATATCCATGTCCTCTGGTTGCAAGAGTTCTGTTCTCAGATGTAGTAG TTTGTATAATGCATTCAGTAAAGAACTAACACATTCCAACAAAAAAGAACATTACTTTTTCATATCTCTTAACTCATGTC CATGTAATGTGTCTATATACATCTGTATTCATATCTCTTAACTGACAAGTCTAAACTCACAGGCAGCTTTGGAAGCACCA AGGGTTCTGAATCTTACGAGCAATAAATATTTCTCAGGACCATATGGTATGTACTCAGGTCAAAAATGAAGTTCTTCAAA ACTAACAGTAGAAGATCTTTTAAATTTGATGTTTGAATTTTTTTTCCACGCAGGTGAAGATGTCATTTTCATCGCCAACG ATTGGCACACTGCCCTTATCCCTTGCTACTTGAAATCTATGTACCAGTCAATCGGCATCTATAAGAATGCCCGAGTAGGT TTTAATCACATCGAATTATCATACTGTCGCACTTTAATATATTTTGTGATTGACCTATTTTAGCATTCATGACCAACTCA GAAGCTCTTTCTGGTTGCTACCATTATCAGGTTGTTTACTGCATTCACAACATTGCTTACCAAGGCAGATTTGCATTTGC GGACTTTCAACTTCTCAATCTCCCTGATCAATTCAAAAGCTCCTTTGACTTCCTTGATGGGTATATTTTCCATCAGTTTT AAATTATAACCATGATAAACAAGAATAAAATTAAACTGCTTCATATTGTTATAATCTTGCAGGCATGTTAAACCAGTGAT TGGAAGGAAAACCAATTGGATGAAAGCTGGAATTTTAGAATCAGACCTGGTGTTAACTGTTAGTCCATACTATGCTGAGG AACTTGTGTCAGGCCCAGATAAAGGAGTGGAGTTGGACAACATCATTCGCAGAACTGGTATTACTGGAATTGTGAATGGC ATGGATGTTCAGGAGTGGAATCCATCCACGGACAAATATTTAACAGTCAAATACAATGCTTCAACAGTAAGAATCTTGAA CTTTATCTAAATTTTGTCATGGCTCATAAAAAAGATATCTACATAACAAATAACAAATTTTAAGCAAACTCTCCTAATTC AGGTGGTGGAAGGAAAGGCTCTTCTGAAAGAAGCCCTCCAAGCAGAAGTTGGGTTGCCGGTCGACAGAAATATTCCTCTC ATCGGTTTCATTGGTAGGCTTGAAGAGCAAAAGGGTTCTGATATTCTTGTGGCAGCCATTCCCCAATTTATTAAGGAGAA TATTCAGATAGTAGCCCTTGTAAGTATTAAACCCAAAATAAAAAAGTAAACATAATTTCTTTAGTCCTTTATACATAGAA GAAGATACAAGAATCTCATGTAAATATGCTATGCTATGCTATGTTTCAGGGAACAGGAAAAAAACAAATGGAAAAGCAGC TTGAGCAACTCGAAATAGCATACCCTGACAAGGCCAGAGGAGTTGCAAAATTCAATGTTCCCCTAGCCCACATGATAATT GCTGGAGCTGATTTTATATTGATTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGAAC TGTATAATTCCTGATTTGCACACTCCTTTCATGCTACCATAAGATTTCATCTAATTACTGAGTTTACATTTACTTCAACT TCTATTCTTGCTTGTGCTAGGTACCAATTGTTGCCTCAACAGGTGGATTAGTCGACACAGTCAAAGAAGGTTTCACTGGT TTTCAGATGGGTTCCTTCAATGTTGAGGTATTAGCAGCCAGCTTTCCTAATATGCAATTGTATCTGTAGCATCGGAAGTG CTAAGAACTAACCATTATCTCATTTTCTTTTGATATTTCGATTTAGTGTGAAGCTGTGGATCCTGCGGATGTGGATGCTC TAGCAAAGACTGTCAAAAGGGCCCTTGCAGTACATGGAACTCTAGCTTTTACAGAAATAATCAAGAATTGCATGGCTCAA GATCTTTCATGGAAGGTAAGCGAGGCAGAACCTTAATAGTATACTCAAAGCCATGATGGTTCCCCCCCCCCCCCCTATTG TAGAGTTACCAAAACTCCGCCTATGTTGTCTCACAGCTGGTCCTAAGCCTGTGGCAACCAACGTAAAACTGGTTGTATCT TTAATACGTACGGACCATGTGATCCATTATCCATATAGCCGACCTTATTTAGTGGGATAAAACTTTAGTTTCTATTGTTT ATTGTTTATGTTTATGATTGTAGAGTTACCAATCCATACCAAGTGTAACTGAATCTTGTTTTGGGATTTAGGGACCTGCT AAGAGGTGGGAGGAAGTGTTGCTAAGCTTGGGAGTTCCCGGCAGTGAAGCTGGAATTGAGGGAGAAGAAATTGCTCCACA AGCAAAGGAAAACTTGGCAACTCCATGATAAGAACAAAGCTGTGAGGGAAGCTTCTGCTAGTATGTGTTTCATGAAGTTC CCATGTGTTCTTCATACTTCCATTTTTGTTTTCTTTTAAAATAGGGCCATTTAATTTTAAACTGCGCAGATTATTTTTTA GGAATTTTATGTAAAGTAGAGGTTAATTTTATATAATTATAGTTATCATTTTTTATAAAGTAACTTTGTTTTGAAGCTAC TATAAAAACTTTTCAATAGATTTTTTTTATTTTTAATTCTGACATTTTTAAAGGTTAAGGAAACACGTTAACAATTTTTA AAGGTTAAATGTTACCAATACACTTTGCCGACTTTTTTATACGTCAACACACTTATCATAGTTTTTAATCTCAGATTTTC AT
CDS sequence (LotjaGi3g1v0403200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAGTGGCTGCTTCAAGTAACTTAGTGTCCAGCAGTTCTTACATCCACCACAGATCAATTCTCTCATATGAGTC TAAAGCTGCATCGACGGGACTTCGATCTCTAAGGCAGACAAATACTCACAATGGACTGAGAATTTTGAACCTGGTGGATG AGCTGTTAAACAGAACCCCAATTCAAGTTAAGGCAGTGCAAGCTAGGAGGAAGGGTCTTCAAGGCAAGAATGTCAGGCCA ACAGGTGTCATAATTTGTGGCATGAATTTGATCTTCCTCGGGACGGAGGTTGGTCCGTGGAGCAAAACTGGTGGCTTAGG AGATGTTTTAGGAGGTCTGCCGCCAGCATTAGCAGCTAATGGGCATAGAGTTATGACCATAGCTCCACGCTATGACCAGT ACAAAGATGCATGGGATACAAGTGTAACAATTGAGGTGAAAGTAGGAGACAAAACAGAAAAAGTTGGCTTCTTCCACTGC CATAAGAGAGGAGTTGATCGTGTATTTGTAGATCACCCTATTTTTCTTGAAAAGGTCTGGGGGAAAAGTGGAACCAAACT TTACGGGCCTACTGCAGGAGAGGATTACCAAGACAATCAACTACGTTTTAGCCTGTTCTGCCAGGCAGCTTTGGAAGCAC CAAGGGTTCTGAATCTTACGAGCAATAAATATTTCTCAGGACCATATGGTGAAGATGTCATTTTCATCGCCAACGATTGG CACACTGCCCTTATCCCTTGCTACTTGAAATCTATGTACCAGTCAATCGGCATCTATAAGAATGCCCGAGTTGTTTACTG CATTCACAACATTGCTTACCAAGGCAGATTTGCATTTGCGGACTTTCAACTTCTCAATCTCCCTGATCAATTCAAAAGCT CCTTTGACTTCCTTGATGGGCATGTTAAACCAGTGATTGGAAGGAAAACCAATTGGATGAAAGCTGGAATTTTAGAATCA GACCTGGTGTTAACTGTTAGTCCATACTATGCTGAGGAACTTGTGTCAGGCCCAGATAAAGGAGTGGAGTTGGACAACAT CATTCGCAGAACTGGTATTACTGGAATTGTGAATGGCATGGATGTTCAGGAGTGGAATCCATCCACGGACAAATATTTAA CAGTCAAATACAATGCTTCAACAGTGGTGGAAGGAAAGGCTCTTCTGAAAGAAGCCCTCCAAGCAGAAGTTGGGTTGCCG GTCGACAGAAATATTCCTCTCATCGGTTTCATTGGTAGGCTTGAAGAGCAAAAGGGTTCTGATATTCTTGTGGCAGCCAT TCCCCAATTTATTAAGGAGAATATTCAGATAGTAGCCCTTGGAACAGGAAAAAAACAAATGGAAAAGCAGCTTGAGCAAC TCGAAATAGCATACCCTGACAAGGCCAGAGGAGTTGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGAGCT GATTTTATATTGATTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGAACTGTACCAAT TGTTGCCTCAACAGGTGGATTAGTCGACACAGTCAAAGAAGGTTTCACTGGTTTTCAGATGGGTTCCTTCAATGTTGAGT GTGAAGCTGTGGATCCTGCGGATGTGGATGCTCTAGCAAAGACTGTCAAAAGGGCCCTTGCAGTACATGGAACTCTAGCT TTTACAGAAATAATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAGGTGGGAGGAAGTGTTGCT AAGCTTGGGAGTTCCCGGCAGTGAAGCTGGAATTGAGGGAGAAGAAATTGCTCCACAAGCAAAGGAAAACTTGGCAACTC CATGA
Protein sequence (LotjaGi3g1v0403200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVAASSNLVSSSSYIHHRSILSYESKAASTGLRSLRQTNTHNGLRILNLVDELLNRTPIQVKAVQARRKGLQGKNVRP TGVIICGMNLIFLGTEVGPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTSVTIEVKVGDKTEKVGFFHC HKRGVDRVFVDHPIFLEKVWGKSGTKLYGPTAGEDYQDNQLRFSLFCQAALEAPRVLNLTSNKYFSGPYGEDVIFIANDW HTALIPCYLKSMYQSIGIYKNARVVYCIHNIAYQGRFAFADFQLLNLPDQFKSSFDFLDGHVKPVIGRKTNWMKAGILES DLVLTVSPYYAEELVSGPDKGVELDNIIRRTGITGIVNGMDVQEWNPSTDKYLTVKYNASTVVEGKALLKEALQAEVGLP VDRNIPLIGFIGRLEEQKGSDILVAAIPQFIKENIQIVALGTGKKQMEKQLEQLEIAYPDKARGVAKFNVPLAHMIIAGA DFILIPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDPADVDALAKTVKRALAVHGTLA FTEIIKNCMAQDLSWKGPAKRWEEVLLSLGVPGSEAGIEGEEIAPQAKENLATP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 614 | 614 | 0.0 | – | |
| PANTHER | 1 | 614 | 614 | 0.0 | – | |
| SUPERFAMILY | 75 | 587 | 513 | 3.84E-114 | – | |
| Hamap | 88 | 589 | 502 | 34.337 | ||
| TIGRFAM | 88 | 587 | 500 | 4.8E-156 | ||
| CDD | 89 | 588 | 500 | 0.0 | – | |
| Gene3D | 90 | 580 | 491 | 4.5E-179 | – | |
| Pfam | 90 | 349 | 260 | 5.8E-73 | ||
| Gene3D | 361 | 571 | 211 | 4.5E-179 | – | |
| Pfam | 406 | 526 | 121 | 5.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Glycogen (starch) synthase activity | Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). |
Expression pattern of LotjaGi3g1v0403200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…