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LotjaGi3g1v0403700.1

Overview

Field Value
Gene ID LotjaGi3g1v0403700
Transcript ID LotjaGi3g1v0403700.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pyruvate dehydrogenase E1 component subunit alpha; TAIR: AT1G01090.1 pyruvate dehydrogenase E1 alpha; Swiss-Prot: sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic; TrEMBL-Plants: tr|A0A0B2Q7E3|A0A0B2Q7E3_GLYSO Pyruvate dehydrogenase E1 component subunit alpha; Found in the gene: LotjaGi3g1v0403700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:80649754..80653771) extracted from Lotus japonicus Gifu genome v1.2.

TAGGAGTTCATCAAACATTGGTTTATCCTCATATAGAGAAATGGTTTAAGTAGGTAACTAAATGCAAATGTAGGAAAAGT TGGTTGGATTTCGGTGTATCAAATGAATTTGCAACACAAGGTCATAATCATAGACACACACACATTGGCACATTGCACAT TGGCAAAGACCCCCAACGGTGAAGACAACGATTATCACCAAGTTACACTCCCTCGTTTCCTCCGCCACATTCATGATTCA CCACCACCCTTTGTTTCTGAATCTCATTATATAAACTAAACACCTCAATTGAATCCCATTCCATTTTCCTTTCATTCTTC TTCTTCTCCTTCTCCACACACAAACATCATACATAGTATTCAACGATGTCTTTCACTGCGACCAAATTCTCCCACCTTCC TCCTCCTATCAATTCCACCATCCCCAGATCCAATGACAACAAGCCTCTCTCCTTCGATGTTTCCAGAGCTAACCCTTCTT CCTCTTTCCTTGGATCCGCTCGCAAGGTGCTTCGCTTCAATGCGGGCCCCGCTAAGGTTCTTGCTCAGCGCCGTTCTTCT TCTTCTTCCCCTGCTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGGTGACCCTTTATCCTTAATTGTTGTTTTTCGT TGGAAAAATCTTTACTTGATGTGAATAGCTATTGATTCTCTGTAATGGGTTTGTTGAGGAAAAAACTTGATTTTTCACAC AATTCAGCTCATTGGAATTGAACCCATATGATAATTTATGCTCTGCATGATTCAAATGTCAATTTTGTCTTATTCTCTTT CAGATGCATAGCTCCTTCACACACTGGTGATTTAGATTTCTTGGGTTTTATTTTTGTGCTATCTAGCTTTAGAAGTTTAA ATTATTGAAAATAGTTATTTTTGTGCCATGTTTGCCAATTTTGTTTGGAGATTTTGTTATTAAGACTGTTGTTTATCTGG ATTTGTTTGGCAGCTTATCACAAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATATTAGGGAGGTTCTTTGAAGACA AGTGTGCCGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGA TTCATCAAGCTTCTGAAGAAAGAAGATAGTGTAGTGAGCACCTACAGGGACCATGTTCATGCACTGAGTAAAGGGGTCCC GGCACGGGCTGTGATGAGTGAACTCTTTGGGAAGGCGACGGGAGTCTGCCGAGGTCAGGGGGGTTCGATGCATATGTTCT CAAAAGAGCACAACGTGCTCGGTGGGTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACCGGGGCAGCATTTTCCAGC AAGTACAGAAGAGAGGTATTGAATCAGGCAGATTGTGATCATGTGACATTGGCATTCTTTGGAGATGGAACTTGTAACAA TGGACAGTTCTATGAATGCCTTAACATGGCTGCTTTGTGGAAGTTGCCAATTGTGTTTGTGGTGGAAAATAATTTGTGGG CCATTGGGATGTCACATCTCAGGGCAACTTCAGATCCTGAGATATGGAAAAAGGGGCCAGCATTTGGAATGCCAGGGGTT CATGTAGACGGGATGGACGTTTTGAAGGTCAGGGAGGTGGCAAAGGAGGCGATTGGAAGGGCTAGAAGAGGAGAGGGACC AACTCTAGTGGAATGTGAGACCTATAGATTTAGAGGACACTCATTGGCTGATCCCGATGAGCTTCGTGACCCAGGTGAGC ATTTACTTTTATTATATTCTTTTACTATGTTCTTCATTTTGAAGTACATATGTTAGTGGTCCTTTGCGTTTCTGGTGGGA TCTATCTTTAGTTGCACTAAGCATAATCCTTATATATTTTATTGTCCTACAATTTGCTTAACATCCTTTTGAATTCTCAA AAGAACCATCTGTGTCCAAAGCAGTTACCTCTTGACAGTTGCTGTAGTTGCTTAGATTGCTCAACATCCTATCTTGACAA GGGTTTGACCTACTTTTATTCTTGAACCTCCCCTATTCCAAAAAAAGAAACGACAAACCAAAAAGGTGGTTAAGGTTTTA GATTAGCAATATAGATCGGTGGAGTTGAACTTGCAGCCGTGCAAGAGGTATAATGTTGTTATTTGGTCATGGAATGTGTA TGATTTCATTGGAAAATGCAATCCAATAGGGTCAGGTTACTATGCTTTACCAATTAATTAAGAACTATAGCCTAAGCAAC CAGTTTCTTAAACTTCAATTATTTTCTTCAATTCTGAAATGATTGTAAAAAACTCTTTAGCTTGACTAATGTATTTTTTT ATCCCTTACCTTTATGTCTTTATTTAAGAAAACAAGTTTTCGAAGCCATAGGTACTAGTAGGTAGTTGAGAGAAAGATTA CTAATGTTACTAACCTTGCTGCCTGAGAGTGTTTATATAAAGCTGGTCTTGACTCTTGATTGAAAGTGGAGGACTTAAAC TTCAATTTCGTTTAAGGATATGTGCATCCTACCCCGCGCTGTGAAAAGTATATTTTGATTAGTTCATCACCTACCTCAAA AAATGGATTACCAACTCGGATAACGTACTCTTACAGACACAGTTTATTCCACCTCTAACACTGCTTCATTGATTGTACCA AATACCAATCATAATTTTTTTCTTTACATTATTGTTATCAAACTTTTCTTCTCTTTAAAGTAATTTGGAGAAGGAAAATA ACACAAGAAACAAATGAATTAAGCTTGTTACATGGGTTGATAGTTGCTCATTTCAATCTTGTCGCATTAATTTGCAGATA GAAAAATCATACTCCACTCTTGTTAGTTTGAGCCCAGACTGTCGTTATCTGACTTGATATGTCATGGTGCTAGCTGCAGA TTAGTGAATGCCTATTTTGATAAATTCAGATGTTTACTAGACTCTAATTCTAATCATGCTGTCAACTATGGAAGTTTCAG TTGCTTAGTTACTGCTGGTGCATATTCATAATACATCTAGAAACTAATTTCTCGAAGTCTGTAAATTTTTATCTCGTGAT GATATATAAGCCACATATTTTTGTTATATTTTTCATCAAGTCTTCTTCTGTTTCCAAATAATTATTAGTAATCATAATAT TTTTCTACTTTGACAGCTGAGAAGGAACACTATGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACATTTTTGAAAA CAATTTAGCCAGTGAACAAGAATTGAAGGCCATAGAGAAGAAAATTGACGAGGTCCTTGAAGAAGCTGTTGAATTTGCAG ATGAGAGCCCTCTTCCACCCCGCAGCCAGCTTCTGGAGAATGTCTTTGCTGATCCCAAAGGTTTTGGTATTGGGCCTGAT GGCAAGTATAGGTGTGAGGATCCAAAATTCACCGAAGGCACTGCTCATGTCTAATCTTTTACACTCTGACTAATATCTGC TTGGGGCCTTCAGTTTTGTATGGAAGTTCTTAATTTGCATGCAGTGCACCTTGTCTACGAAACAGGACTTGTTCTTTTTA TTATTGTTTGTGTTAAGATTGGAAATCTACTAAGTTTGATTAAAGCCTGTAAGAACTGTGTAAAATAAATTTTTATTTTT ACTTCTGCTCTTAAGTAATATACTTGTTAAATGTGAGGTGACATATGAGTATGGGGTATTTAGGGCCAATGCTTCTGATG AAATTTTCAAGCACTAACACAAAGCTTTTGGATTTTCTGCTCTTTTCTTTTTCTTTTTTACAATTGAAATTACTTTTCAA AATACAACTGAAATGTGTTAGTTAAAGAAAAATATTCTGTGCAAATTTTCACCAACTGATCCAAACATGCACTGGATTAA TATCACTAGGAATAACGACTCCATAGTAATTTGTGAATGTATGGATGCAAGCGAGCCCATAGGATTTGCTGCATATCTTA AGGGACTGCTCAGAGGCTCGACAGGTTTGGCGGGCATCGCATTTGCCATTGTAGTGTGCACTATTTAGAAATGTAAGTGT AATGATGTCTTTGATGGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0403700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTTTCACTGCGACCAAATTCTCCCACCTTCCTCCTCCTATCAATTCCACCATCCCCAGATCCAATGACAACAAGCC TCTCTCCTTCGATGTTTCCAGAGCTAACCCTTCTTCCTCTTTCCTTGGATCCGCTCGCAAGGTGCTTCGCTTCAATGCGG GCCCCGCTAAGGTTCTTGCTCAGCGCCGTTCTTCTTCTTCTTCCCCTGCTGCTGCTGTTCTTCTCGAACGAACCTCCAAT CTGCTTATCACAAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATATTAGGGAGGTTCTTTGAAGACAAGTGTGCCGA GATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGATTCATCAAGC TTCTGAAGAAAGAAGATAGTGTAGTGAGCACCTACAGGGACCATGTTCATGCACTGAGTAAAGGGGTCCCGGCACGGGCT GTGATGAGTGAACTCTTTGGGAAGGCGACGGGAGTCTGCCGAGGTCAGGGGGGTTCGATGCATATGTTCTCAAAAGAGCA CAACGTGCTCGGTGGGTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACCGGGGCAGCATTTTCCAGCAAGTACAGAA GAGAGGTATTGAATCAGGCAGATTGTGATCATGTGACATTGGCATTCTTTGGAGATGGAACTTGTAACAATGGACAGTTC TATGAATGCCTTAACATGGCTGCTTTGTGGAAGTTGCCAATTGTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGAT GTCACATCTCAGGGCAACTTCAGATCCTGAGATATGGAAAAAGGGGCCAGCATTTGGAATGCCAGGGGTTCATGTAGACG GGATGGACGTTTTGAAGGTCAGGGAGGTGGCAAAGGAGGCGATTGGAAGGGCTAGAAGAGGAGAGGGACCAACTCTAGTG GAATGTGAGACCTATAGATTTAGAGGACACTCATTGGCTGATCCCGATGAGCTTCGTGACCCAGCTGAGAAGGAACACTA TGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACATTTTTGAAAACAATTTAGCCAGTGAACAAGAATTGAAGGCCA TAGAGAAGAAAATTGACGAGGTCCTTGAAGAAGCTGTTGAATTTGCAGATGAGAGCCCTCTTCCACCCCGCAGCCAGCTT CTGGAGAATGTCTTTGCTGATCCCAAAGGTTTTGGTATTGGGCCTGATGGCAAGTATAGGTGTGAGGATCCAAAATTCAC CGAAGGCACTGCTCATGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0403700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSFTATKFSHLPPPINSTIPRSNDNKPLSFDVSRANPSSSFLGSARKVLRFNAGPAKVLAQRRSSSSSPAAAVLLERTSN LLITKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA VMSELFGKATGVCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSSKYRREVLNQADCDHVTLAFFGDGTCNNGQF YECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIGRARRGEGPTLV ECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQL LENVFADPKGFGIGPDGKYRCEDPKFTEGTAHV
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11516
1 426 426 2.0E-238 –
PANTHER
PTHR11516:SF58
1 426 426 2.0E-238 –
Gene3D
G3DSA:3.40.50.970
58 416 359 2.4E-122 –
SUPERFAMILY
SSF52518
80 408 329 8.25E-101
IPR029061
TIGRFAM
TIGR03182
85 406 322 1.1E-140
IPR017597
CDD
cd02000
91 389 299 3.78167E-153 –
Pfam
PF00676
95 395 301 1.7E-81
IPR001017
Coils
Coil
364 391 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004739
Molecular function Pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
Subterm of
GO:0006086
Biological process Acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
Subterm of
GO:0016624
Molecular function Oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.
Subterm of
GO:0043231
Cellular component Intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0403700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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