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LotjaGi3g1v0403700.3

Overview

Field Value
Gene ID LotjaGi3g1v0403700
Transcript ID LotjaGi3g1v0403700.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pyruvate dehydrogenase E1 component subunit alpha; TAIR: AT1G01090.1 pyruvate dehydrogenase E1 alpha; Swiss-Prot: sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic; TrEMBL-Plants: tr|A0A0B2Q7E3|A0A0B2Q7E3_GLYSO Pyruvate dehydrogenase E1 component subunit alpha; Found in the gene: LotjaGi3g1v0403700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:80650429..80653167) extracted from Lotus japonicus Gifu genome v1.2.

TTCTCTGTAATGGGTTTGTTGAGGAAAAAACTTGATTTTTCACACAATTCAGCTCATTGGAATTGAACCCATATGATAAT TTATGCTCTGCATGATTCAAATGTCAATTTTGTCTTATTCTCTTTCAGATGCATAGCTCCTTCACACACTGGTGATTTAG ATTTCTTGGGTTTTATTTTTGTGCTATCTAGCTTTAGAAGTTTAAATTATTGAAAATAGTTATTTTTGTGCCATGTTTGC CAATTTTGTTTGGAGATTTTGTTATTAAGACTGTTGTTTATCTGGATTTGTTTGGCAGCTTATCACAAAAGAGGAAGGGT TGGAGCTCTATGAAGACATGATATTAGGGAGGTTCTTTGAAGACAAGTGTGCCGAGATGTATTATAGGGGCAAAATGTTT GGTTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGATTCATCAAGCTTCTGAAGAAAGAAGATAGTGTAGT GAGCACCTACAGGGACCATGTTCATGCACTGAGTAAAGGGGTCCCGGCACGGGCTGTGATGAGTGAACTCTTTGGGAAGG CGACGGGAGTCTGCCGAGGTCAGGGGGGTTCGATGCATATGTTCTCAAAAGAGCACAACGTGCTCGGTGGGTTTGCATTC ATTGGTGAAGGAATTCCAGTGGCCACCGGGGCAGCATTTTCCAGCAAGTACAGAAGAGAGGTATTGAATCAGGCAGATTG TGATCATGTGACATTGGCATTCTTTGGAGATGGAACTTGTAACAATGGACAGTTCTATGAATGCCTTAACATGGCTGCTT TGTGGAAGTTGCCAATTGTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGATGTCACATCTCAGGGCAACTTCAGAT CCTGAGATATGGAAAAAGGGGCCAGCATTTGGAATGCCAGGGGTTCATGTAGACGGGATGGACGTTTTGAAGGTCAGGGA GGTGGCAAAGGAGGCGATTGGAAGGGCTAGAAGAGGAGAGGGACCAACTCTAGTGGAATGTGAGACCTATAGATTTAGAG GACACTCATTGGCTGATCCCGATGAGCTTCGTGACCCAGGTGAGCATTTACTTTTATTATATTCTTTTACTATGTTCTTC ATTTTGAAGTACATATGTTAGTGGTCCTTTGCGTTTCTGGTGGGATCTATCTTTAGTTGCACTAAGCATAATCCTTATAT ATTTTATTGTCCTACAATTTGCTTAACATCCTTTTGAATTCTCAAAAGAACCATCTGTGTCCAAAGCAGTTACCTCTTGA CAGTTGCTGTAGTTGCTTAGATTGCTCAACATCCTATCTTGACAAGGGTTTGACCTACTTTTATTCTTGAACCTCCCCTA TTCCAAAAAAAGAAACGACAAACCAAAAAGGTGGTTAAGGTTTTAGATTAGCAATATAGATCGGTGGAGTTGAACTTGCA GCCGTGCAAGAGGTATAATGTTGTTATTTGGTCATGGAATGTGTATGATTTCATTGGAAAATGCAATCCAATAGGGTCAG GTTACTATGCTTTACCAATTAATTAAGAACTATAGCCTAAGCAACCAGTTTCTTAAACTTCAATTATTTTCTTCAATTCT GAAATGATTGTAAAAAACTCTTTAGCTTGACTAATGTATTTTTTTATCCCTTACCTTTATGTCTTTATTTAAGAAAACAA GTTTTCGAAGCCATAGGTACTAGTAGGTAGTTGAGAGAAAGATTACTAATGTTACTAACCTTGCTGCCTGAGAGTGTTTA TATAAAGCTGGTCTTGACTCTTGATTGAAAGTGGAGGACTTAAACTTCAATTTCGTTTAAGGATATGTGCATCCTACCCC GCGCTGTGAAAAGTATATTTTGATTAGTTCATCACCTACCTCAAAAAATGGATTACCAACTCGGATAACGTACTCTTACA GACACAGTTTATTCCACCTCTAACACTGCTTCATTGATTGTACCAAATACCAATCATAATTTTTTTCTTTACATTATTGT TATCAAACTTTTCTTCTCTTTAAAGTAATTTGGAGAAGGAAAATAACACAAGAAACAAATGAATTAAGCTTGTTACATGG GTTGATAGTTGCTCATTTCAATCTTGTCGCATTAATTTGCAGATAGAAAAATCATACTCCACTCTTGTTAGTTTGAGCCC AGACTGTCGTTATCTGACTTGATATGTCATGGTGCTAGCTGCAGATTAGTGAATGCCTATTTTGATAAATTCAGATGTTT ACTAGACTCTAATTCTAATCATGCTGTCAACTATGGAAGTTTCAGTTGCTTAGTTACTGCTGGTGCATATTCATAATACA TCTAGAAACTAATTTCTCGAAGTCTGTAAATTTTTATCTCGTGATGATATATAAGCCACATATTTTTGTTATATTTTTCA TCAAGTCTTCTTCTGTTTCCAAATAATTATTAGTAATCATAATATTTTTCTACTTTGACAGCTGAGAAGGAACACTATGC TGGTAGGGATCCCATCACTGCATTGAAGAAATACATTTTTGAAAACAATTTAGCCAGTGAACAAGAATTGAAGGCCATAG AGAAGAAAATTGACGAGGTCCTTGAAGAAGCTGTTGAATTTGCAGATGAGAGCCCTCTTCCACCCCGCAGCCAGCTTCTG GAGAATGTCTTTGCTGATCCCAAAGGTTTTGGTATTGGGCCTGATGGCAAGTATAGGTGTGAGGATCCAAAATTCACCGA AGGCACTGCTCATGTCTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0403700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATATTAGGGAGGTTCTTTGAAGACAAGTGTGCCGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTA CAATGGCCAAGAAGCTGTGTCAACTGGATTCATCAAGCTTCTGAAGAAAGAAGATAGTGTAGTGAGCACCTACAGGGACC ATGTTCATGCACTGAGTAAAGGGGTCCCGGCACGGGCTGTGATGAGTGAACTCTTTGGGAAGGCGACGGGAGTCTGCCGA GGTCAGGGGGGTTCGATGCATATGTTCTCAAAAGAGCACAACGTGCTCGGTGGGTTTGCATTCATTGGTGAAGGAATTCC AGTGGCCACCGGGGCAGCATTTTCCAGCAAGTACAGAAGAGAGGTATTGAATCAGGCAGATTGTGATCATGTGACATTGG CATTCTTTGGAGATGGAACTTGTAACAATGGACAGTTCTATGAATGCCTTAACATGGCTGCTTTGTGGAAGTTGCCAATT GTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGATGTCACATCTCAGGGCAACTTCAGATCCTGAGATATGGAAAAA GGGGCCAGCATTTGGAATGCCAGGGGTTCATGTAGACGGGATGGACGTTTTGAAGGTCAGGGAGGTGGCAAAGGAGGCGA TTGGAAGGGCTAGAAGAGGAGAGGGACCAACTCTAGTGGAATGTGAGACCTATAGATTTAGAGGACACTCATTGGCTGAT CCCGATGAGCTTCGTGACCCAGCTGAGAAGGAACACTATGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACATTTT TGAAAACAATTTAGCCAGTGAACAAGAATTGAAGGCCATAGAGAAGAAAATTGACGAGGTCCTTGAAGAAGCTGTTGAAT TTGCAGATGAGAGCCCTCTTCCACCCCGCAGCCAGCTTCTGGAGAATGTCTTTGCTGATCCCAAAGGTTTTGGTATTGGG CCTGATGGCAAGTATAGGTGTGAGGATCCAAAATTCACCGAAGGCACTGCTCATGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0403700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGVCR GQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSSKYRREVLNQADCDHVTLAFFGDGTCNNGQFYECLNMAALWKLPI VFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLAD PDELRDPAEKEHYAGRDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFADPKGFGIG PDGKYRCEDPKFTEGTAHV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11516:SF58
1 332 332 2.5E-224 –
Gene3D
G3DSA:3.40.50.970
1 322 322 4.3E-117 –
CDD
cd02000
1 295 295 1.32069E-149 –
PANTHER
PTHR11516
1 332 332 2.5E-224 –
TIGRFAM
TIGR03182
1 312 312 1.6E-137
IPR017597
SUPERFAMILY
SSF52518
1 314 314 1.41E-96
IPR029061
Pfam
PF00676
6 301 296 1.5E-81
IPR001017
Coils
Coil
270 297 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004739
Molecular function Pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
Subterm of
GO:0006086
Biological process Acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
Subterm of
GO:0016624
Molecular function Oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.
Subterm of
GO:0043231
Cellular component Intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0403700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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