Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0406200 |
| Transcript ID | LotjaGi3g1v0406200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat protein; TAIR: AT3G13950.1 ankyrin; TrEMBL-Plants: tr|I3SVR5|I3SVR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0406200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80955674..80957829) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTATCTAGACAACAAAACACAAGAAGAGAAAAGTTTTTTTTTTTTTATAAGCAATTTGAACTATATTGAATGAAGTA CAAGGGGTACTTCAACCCAATACAAAGAGAATAAGAGAATGGAGAAGAAAAGGAAAAAGAAACGACTTACTCCTAAACTG ATGAAGAAGATCCAGCACCTACCCAACCCCCTCCCCCTGAAGAAGATCAAAGGGAACATGCCTCATTAAAACCTTACCAG GGAAAACCCCATTGGAAAAACCTAGTGAGGAAAAAGAGTACCGGTTCACAAAGATTAAGATGAAACTTCAGGGGAAGAAT TACAAAACCCACCCCAAGAAAGCCAACGAACCTAAAAAGATACCACCAGCAAAGACCCAAATAGCTAAAATCTAAGACCT GCAGCATACCAACAGGAATAGATACTACCACACAGGAGCAAAATACAGTTAAACAATCCAACCAAGCCAAAACCCTCCAC GGCCACAAATACCAAAAACTCCCATACAGCTCCACTCATGGAAAGACTTGGCAGGCATGTTCCAATTGATATGATGAGAA AAGAAATAATTTTAGAGTATATGATGAGTTGCTCTTTTATGGTACACAAAATATCTTATTGTAGTGGCCTCATGAGGACA AATAATTGTGTGAACTAAAATGGATCAACTAAAATATCATCGTACTGTAGGGTCATGAGGACAATTAATAATTGAGTGGA CTGAAGAAGACCCTCTTCAGCAAATTAACTAAAATTTTGCGTATATATACCCAGCATGTGATTTTCAAGGTGAGTGAGGC AATTGCAATATAATTAAATAAGCATTTAGTGATAAAATGAGTACTCATCTGGAGTCATCAATAATTGGCAGCAGGCAAGG GAGAACTCCTCCAAAGAGTTGTTGGGCAAAGTTTCTGGGTCTTGTAGAAAGTTGCTTGAGAGATGAAGATAAGGTAAAAT GGGTTGAAAACATGAGAGGGAGCCTGAGTTTGATGGCTTCTATAATCGCCACAATGACCTTTCAACTCGCCACTAACCCG CCGGGCGGCGTCTTTCAGGCAAATGGCGGAGTTCCAGTATCTTATGCTAAGATTTGTCTGGACAATGATACCATTCAATG CCCAGGAGAAGCTGTGATGGCTGTTGTGTACGAGAAGGTTTATACAAATTTCTTGATTTGCAACACCGTCTCCTTCATCG CGTCCCTCACTGTTTGTCTCTTGCTGGTGAGTGGAATCCCTCTCAAACATCGACTCGTCATATGGGTTTTGTCGATCGGC ATGTGCATCACCACCACCAGCCTCGCTCTCACCTACATGTTTGCGGCCTCCATGGTCACACCAGATCCCGTTTGGGAGGC TGCTGATAAAATGTTTGGACGAGTACTCGAAATCTGGGTTCTCTTGCTAGGAATCGTGGGTGTTTATCTCATCATACGAA TGGTTTACCGTGTGGTTAAATGGATCATTAAATGTTGTCGCCCGCGGCCACAACAATGAGAATCGCACGAGCTAGCTAGC TTGCATCGTATGGTTGCAATTGGTTGCAGATTATGAATAAACGTTATATACGTACGTACGGTTTCATGTGAGTATGCATG ATTTACGAAATTTGTCGTATTTAATTTTTGTTCGAGTACATTACAGGGGTACTCTTGATCCTGCTTTCATACGTGGAAGA GAAGTTATATCTTAGATTAATGCCTTAATGGTGTTGTTGTCCATTTAGTACTTTGTTTAATGCCTTAATGCCTTAAAGAT GCATGTGTGACATGTGTGACATGTTTTTGTGGATTTGTATCCTTTAAAGTTGGGAAGAATATTTGCAGAGAGTACACTTC CATCTCGATCTCACCTCTATTATGTTAGAAGTTTCATATTGGTTAGAGATATTGCATGGTTAGAGATATGATCAAACAAA TTTCTATAAATGGTAGAGAAACCATCAACTCTTGAGCTATTTTTTAGTTGAGTTAGGTCTCTCTAATTTTAATATGGCAT CAGAGCTTATCCTAGATTTATTTGTTGTGGAAACCTCTCATATTTGGATCACCTGTACATGTTCATTTCACGCTCCAAAT GTCCAACCCTGGGCGTGAGGGTGTATGTTAGAAGTCTTACATTAGCTAGAGATATGGTCAAACAAGTGTTATAAAG
CDS sequence (LotjaGi3g1v0406200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTACTCATCTGGAGTCATCAATAATTGGCAGCAGGCAAGGGAGAACTCCTCCAAAGAGTTGTTGGGCAAAGTTTCT GGGTCTTGTAGAAAGTTGCTTGAGAGATGAAGATAAGGTAAAATGGGTTGAAAACATGAGAGGGAGCCTGAGTTTGATGG CTTCTATAATCGCCACAATGACCTTTCAACTCGCCACTAACCCGCCGGGCGGCGTCTTTCAGGCAAATGGCGGAGTTCCA GTATCTTATGCTAAGATTTGTCTGGACAATGATACCATTCAATGCCCAGGAGAAGCTGTGATGGCTGTTGTGTACGAGAA GGTTTATACAAATTTCTTGATTTGCAACACCGTCTCCTTCATCGCGTCCCTCACTGTTTGTCTCTTGCTGGTGAGTGGAA TCCCTCTCAAACATCGACTCGTCATATGGGTTTTGTCGATCGGCATGTGCATCACCACCACCAGCCTCGCTCTCACCTAC ATGTTTGCGGCCTCCATGGTCACACCAGATCCCGTTTGGGAGGCTGCTGATAAAATGTTTGGACGAGTACTCGAAATCTG GGTTCTCTTGCTAGGAATCGTGGGTGTTTATCTCATCATACGAATGGTTTACCGTGTGGTTAAATGGATCATTAAATGTT GTCGCCCGCGGCCACAACAATGA
Protein sequence (LotjaGi3g1v0406200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTHLESSIIGSRQGRTPPKSCWAKFLGLVESCLRDEDKVKWVENMRGSLSLMASIIATMTFQLATNPPGGVFQANGGVP VSYAKICLDNDTIQCPGEAVMAVVYEKVYTNFLICNTVSFIASLTVCLLLVSGIPLKHRLVIWVLSIGMCITTTSLALTY MFAASMVTPDPVWEAADKMFGRVLEIWVLLLGIVGVYLIIRMVYRVVKWIIKCCRPRPQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 48 | 48 | - | – | |
| PANTHER | 40 | 204 | 165 | 1.2E-31 | – | |
| PANTHER | 40 | 204 | 165 | 1.2E-31 | – | |
| Pfam | 41 | 165 | 125 | 8.4E-19 | ||
| TMHMM | 48 | 65 | 18 | - | – | |
| Phobius | 49 | 66 | 18 | - | – | |
| Phobius | 67 | 107 | 41 | - | – | |
| Phobius | 108 | 131 | 24 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 132 | 139 | 8 | - | – | |
| Phobius | 140 | 163 | 24 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| Phobius | 183 | 200 | 18 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 201 | 220 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0406200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…