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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0415100 |
| Transcript ID | LotjaGi3g1v0415100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor-like protein; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q8L8A6|GRF5_ARATH Growth-regulating factor 5; TrEMBL-Plants: tr|A0A0S3SZU0|A0A0S3SZU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0415100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82038003..82041583) extracted from Lotus japonicus Gifu genome v1.2.
TCGGCAACTTACACTTCACAATTCACATAATCGGATGATGGCACTGTTTTCCATGAAGTATTGATGATGTGGAGACAGCA AAAGCAAAGGTGCATGGACTAACATGCAATATTTGAATTTAATTTTTCTTTCTTCTCTCTTCTTCCCTTGTACATTTGTT TATGGATTTCTGCAAAGATGTCAGAAACAACAAAGGCATCAGCAGCAGCAGACTAAAAAACAGAAGCAACAGAGGTGCAG TCATTATAAGAGCAGCAGACTCACTCACTCACCCATCCAGCACATAGAAAAATTAAGTGAGCAGGTGGCAGAAAGCAAGC AAGGAGGAGCATCATCATAGCCATTAGTATTATCCATGCACAGTAGAAGCATCTACAAAACCATTTAAGCAAAACACAAA CACCTCCTCACCTTCACTCTTGAACCCAAAAAATAAAACCTTCAAAAAACTATCAGAGAAAGAACCCTTTTGTCTCAAAA TGATGAGTACTGCTAGTGCAAGAAATAGGTCCCCTTTCACACCAACTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTT TTTAAATACATGGTTACAGGAACACCAATCCCACCAGATCTCATCTTCTCCATTAAAAGAAGTCTAGACTCTTCAGTATC TTCAAGACTCTTCCCACATCATCCCAGTAAGTGTCTTATTACCATAATAATTTATTAGATTCGGTGTCTGTCGTTTCGAT TCGTGTATAAAAATAAAGTATATATTAGTTGTTATCATTATTATTTTATATATATATATAAAGTTCTTTATTTCTGTTGT GGGACAAAATAAAATTTAGAGCCTGGTTTGTTGTCATAAACTGTTGTGGGTGCAGTTGGGTGGGGATGTTTTGAAATGGG TTTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCAT ATGCAGACTCCAAGTACTGCGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACA CCTTTAACAACCACCACCGCCACAAACACACCATCTTATACTAATAGAAACCTTTCCCTCAGCAACAACAACAACATGAC TTCACCATCTTCTTTCCCTTTCTCTCCACTGCCCTCATCTATTGAGTCCCAGAACTTTTCCCAGTCTTACCAAAACCCTT CTCTAAACCCCTTCTTTTACTCCCAATCAGCTTCTTCTAGAACCCCTGATTCTGATTTTTCAACTCAAGATGCCACTACC CACCAGCTGTTTATGGATTCTGCCTCTTATTCTCAAGATGAAAAGGATTTTAGGTGAGTACACAATCAAGAGAAGCTCAT TTAAAAATAACTGACAAGTTAAAATCATGATTTATAGAACAAATAAAAAATACAGTAAAGCTAGAATCATTGTGGACAAA AACAAAAGCTAATTAAATTTGCTCTAGCTTGTTAACCATGATTTTGGCTTCACTATTTAAAAATGGAATAGCTTTTTTAC TTTTTTGTTCTCTGACTTATTGCTGTGTTTTGTTCTATTTGATTATTGCTATCAGGAATGTTCATGGAATGAGGGAGGGT GTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGGTCTGCTGCTAGTGCTAGGAGCTACCCTGACTCATATCAGCAACT ATCAATGGGTTCCTATAAGTCTTATTCAAACTCCCAGTTTCAGAATATCAATGATAACCCAAGACAAGAGGAGCAGCACT TGTTTGTTTTGGGTACTGACTTCAAATCAACAAGACAAAGTAAAGAGATCAAAGAAAATGAGACAACAACACAGAAACCC CTTCACCACTTCTTTGAAGATTGGCCACCAAAGAACACTGATTCCTGGCTAGACCTTTCTTCCAACTCCAGAATCCCAAC AGGTGATGATTCTGCATACCTTTATTATTAATATTCCACTTCTTGCTTTTGTTTATTTATTTATTATATTCTGCTTTAAC CTGTGCAGATGAATAAGGATTGTTAATTATGAGCTGGTGGATACTGCCAAGGGAGTCTTATTGCTGAAGATCAGTGTTGT GTGGCTGGGGTGATTTTTCTTTTGCAAAAGGTGTGATCTTATTGTGTTAAATGGGGGACCACACTAGGATTTGCGTCTGC TTTTATTGATATTTTATTTTATATGCTTCTTTCTTCCCCTTGAAGAAAAGTTAAAAAACATGTCTCAGATTTTCACACTT AAGTTTGTTTGACTGGAAAGCATGTTAAGTTGCTCTGGGGAAGAGTGGGAATTGAGTTTGGTGCCCCACCCCTTAGGCTT TGCATCCCACTTTATTAAATACGGAATTTAAAGTTCCGTATCAATACAGAAAATAAAATTCCGTATCTGTTTTAGTATAT AATGAGTGGTTGAAAATGTGACACGCATGCTTAAATACAGTACGGAATTTTAAGTTCTGTATTCAATAGGGAGAATACGG AATTTTAAATTCCGTATTTGATAAAGTGGGGTGCCAAGCCCCATAGGTGGGGTGCCAAACCCAACTCCCGTTGCTCTGCA GTCTGCTTTTTAATGGGTGGTAGTAGGCAAGGACAATTCAAATTAAGCTCTGTTGCTTGTGCTTGTTCTGAACCTGTGTT GTGCATGGACCCAGCAGAGAACATGTGCAATGAATGTTGGCATATATTGCCACTATGAAGAAGTTGCATTTTTTCCTTTT CATATTTTCTAAAGGGTATTCAAAAATCCTCTCTATCTCATCCAAAATTCCCATTGAAAGGTTTCAAACTTTGCATCAGC AGCCTATTATTCATTCATTGAAAATTTTGAGTTTGCTATGCTTCATTGCCATGAGTGAGTAGCAATCAACTTGGGTAACT GGATAAGCTCTAAACCAATCTGTCTTTCACAACCTGGATTTTCTGAAAATTTGTTTCAAAACCACGATAAAGATAAAATC ATGATGAATAAAAGTAAAAGATAAAAGAAGTTGTTTCTATTCATTATTATTTTGTCTTCATGTATTGTTCGAACGAGTCT CCAAAAAATGCACTTAAGCGTCATGTTCCTGCTTTCTATTAGTTTGATCAGTACACAATACAACCTACATAGTAAACCAT GTGCAATCTTGGAGTTCGAAGTTTTACAGCTACATGTGTCTTTCTCATCAAACCTCTTTCTTCCTCATCTCTTATCGTCC TCTCTTATTCTTCCACCACCTTTACATTTTGAAGAGGTGTCAAGATGTTTTTTAGCGAAGAATAAAGTCACAGCAGAAGG TACCATGGGCTAGTGGTACTCCTTAACACTTATCTGGAATTCTTATCCCTCTCATTTTAGATTCACCTCTGCCTTAAAAT ATATAAACATATTTGACCAAAAAAATATATATATATAAACATATATGAGAAATATAATGAGTAATGAGTGGAAAAAATAA CATAAGAAAAGTAAGATGTAGATCAACTAAAAAAAATGTTAATGTGGATCTCCACTAGCTGTGAATCCACTTTTAAGCAC CCAAGTAGTAAAAGGTGCGAGTGCTCCTGAATAACAATGACCACAAAGCGATTACAAAGCA
CDS sequence (LotjaGi3g1v0415100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTACTGCTAGTGCAAGAAATAGGTCCCCTTTCACACCAACTCAGTGGCAAGAACTTGAACAACAAGCTCTTGT TTTTAAATACATGGTTACAGGAACACCAATCCCACCAGATCTCATCTTCTCCATTAAAAGAAGTCTAGACTCTTCAGTAT CTTCAAGACTCTTCCCACATCATCCCATTGGGTGGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAGCCA GGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATGCAGACTCCAAGTACTGCGAAAGACA CATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACACCTTTAACAACCACCACCGCCACAAACA CACCATCTTATACTAATAGAAACCTTTCCCTCAGCAACAACAACAACATGACTTCACCATCTTCTTTCCCTTTCTCTCCA CTGCCCTCATCTATTGAGTCCCAGAACTTTTCCCAGTCTTACCAAAACCCTTCTCTAAACCCCTTCTTTTACTCCCAATC AGCTTCTTCTAGAACCCCTGATTCTGATTTTTCAACTCAAGATGCCACTACCCACCAGCTGTTTATGGATTCTGCCTCTT ATTCTCAAGATGAAAAGGATTTTAGGAATGTTCATGGAATGAGGGAGGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCT TCAGGGTCTGCTGCTAGTGCTAGGAGCTACCCTGACTCATATCAGCAACTATCAATGGGTTCCTATAAGTCTTATTCAAA CTCCCAGTTTCAGAATATCAATGATAACCCAAGACAAGAGGAGCAGCACTTGTTTGTTTTGGGTACTGACTTCAAATCAA CAAGACAAAGTAAAGAGATCAAAGAAAATGAGACAACAACACAGAAACCCCTTCACCACTTCTTTGAAGATTGGCCACCA AAGAACACTGATTCCTGGCTAGACCTTTCTTCCAACTCCAGAATCCCAACAGATGAATAA
Protein sequence (LotjaGi3g1v0415100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSTASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSVSSRLFPHHPIGWGCFEMGFGRKVDPEP GRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVEVSSTPLTTTTATNTPSYTNRNLSLSNNNNMTSPSSFPFSP LPSSIESQNFSQSYQNPSLNPFFYSQSASSRTPDSDFSTQDATTHQLFMDSASYSQDEKDFRNVHGMREGVDERAFFPEA SGSAASARSYPDSYQQLSMGSYKSYSNSQFQNINDNPRQEEQHLFVLGTDFKSTRQSKEIKENETTTQKPLHHFFEDWPP KNTDSWLDLSSNSRIPTDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 334 | 331 | 1.3E-122 | ||
| PANTHER | 4 | 334 | 331 | 1.3E-122 | – | |
| SMART | 11 | 47 | 37 | 1.6E-12 | ||
| ProSiteProfiles | 12 | 47 | 36 | 21.321 | ||
| Pfam | 12 | 45 | 34 | 1.7E-14 | ||
| ProSiteProfiles | 77 | 121 | 45 | 24.658 | ||
| Pfam | 78 | 120 | 43 | 3.8E-21 | ||
| MobiDBLite | 108 | 160 | 53 | - | – | |
| MobiDBLite | 118 | 160 | 43 | - | – | |
| MobiDBLite | 181 | 200 | 20 | - | – | |
| MobiDBLite | 295 | 339 | 45 | - | – | |
| MobiDBLite | 295 | 319 | 25 | - | – | |
| MobiDBLite | 324 | 339 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi3g1v0415100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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