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LotjaGi3g1v0415400.1

Overview

Field Value
Gene ID LotjaGi3g1v0415400
Transcript ID LotjaGi3g1v0415400.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT1G22640.1 myb domain protein 3; Swiss-Prot: sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3; TrEMBL-Plants: tr|V7APD4|V7APD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:82105596..82107196) extracted from Lotus japonicus Gifu genome v1.2.

CATGACCAAACATTGCTCAACCTATGATCGATCTTTCTCACTGATCTTTCACACAGAAAACGCCTGCAGCACACTCAACA CAACACAAGGAGATGGGAAGGAGTCCTTGTTGTCTTAAGGAAGGTTTGAACAAAGGAGCATGGACTGCTATGGAAGACAA GATTCTCACCGAATACATTCAGATTCATGGCGAAGGAAAATGGAGACACCTCCCCAAAAGAGCAGGTAAATGGCCGGGTT GTTATATCAGTTGGAGGTTTGTTTAACACACATTGCATTGATTGGTCTAAATATTAACTAATTAATATAATGGTTTCTTG CAGGTCTTAAGAGATGTGGGAAAAGTTGCAGGCTAAGATGGTTGAATTATTTAAAGCCTGGTATTAAAAGAGGAAATATC ACCAATGATGAAGAAGAGCTTATTATCAGGCTTCACAACCTTCTTGGAAACAGGTACATTAAAAAAAGTTATTTTTCTTA TTGAAAGTACGGGTAGTACTACATGTTTTGTTACACGACCGCCACAAAACTTAACTATTACTTTGGTTTCCACCTGCATT AGTTTCACATTAAATAAAGCTATGATCAAATAAACTTTTATAACAAGTGTACTGTATCGATTTTAGGTGGTCTTTGATTG CTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATATTGGAAGGAAACTAAATCAAAGT GGTGGTGCCTCAAAATGCTCCATGACAAATTGTGGTGCACGAAGCTCATTAGTTCAACATGATCAAAACATCGTGAAAAC AAAAGAGTGGCGTTGTCCTTGCCCAAATAAGGGTGTTGTCCAGACAAAAGCTACAAGGTGGACTAAAGAAATGATCACCA CTCAGTTACAAAATGAAAGGGCTGCTGAGAGCAATGTTGTTGTTAATGATAACAAAATGATCAAGGGATCACCGGTATCT TCACCTTCTTCAGAGAATAACAATATTGATAATCCTTTGGATTTCATGGCAGATTTTGAGATTGATTGTGATTTCTTTAC GGAGTTACTCAAGATGGATTTACCTGAACTATCTTCCTTCGGAAATAACATGCTGCAAGGTAATAATGGTAACCCTAGTA CAGTTGAGTTTGACAATGGTAATTTGTCTCCAGGATCATCCGATGAAAGTCACTTCCCTTGGGGTGATTCTTTATATGAT AGTACAGGTTTTGATTTTCAATCAGTGGCAACTTTTATGGAGTTCGGATTGGATTGGCTATGAAATAGGAAGTTAAGAGA GAATGAATTCAGGGTGTGTGTTTTGGTCTTTATCGGGTGTAAAGACCGTCTCAGAATTTCAACTTGTGTCCAGTTGGTCT TTACCACCAGACCAGCATGTTCTTGGAAATTCAATGTGTGTTTAGATTATTATTACTATATATATATTCTTCTTTGTTCA AGGTAATGATTATGATTTTTTTTGTTGATCTTTTGATTGTAAAATAAGCTGATGTTGCAAACATTTTTCTTATCATTAAG TGCTTGTTTGAAAGTTCGTTCAAAATTACATGAACTAATGTACTAAATGATAATTGATTAAACTCTGTAGCAAGAAGTTA A
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0415400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGGAGTCCTTGTTGTCTTAAGGAAGGTTTGAACAAAGGAGCATGGACTGCTATGGAAGACAAGATTCTCACCGA ATACATTCAGATTCATGGCGAAGGAAAATGGAGACACCTCCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAAAGTTGCA GGCTAAGATGGTTGAATTATTTAAAGCCTGGTATTAAAAGAGGAAATATCACCAATGATGAAGAAGAGCTTATTATCAGG CTTCACAACCTTCTTGGAAACAGGTGGTCTTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTA CTGGAACACCAATATTGGAAGGAAACTAAATCAAAGTGGTGGTGCCTCAAAATGCTCCATGACAAATTGTGGTGCACGAA GCTCATTAGTTCAACATGATCAAAACATCGTGAAAACAAAAGAGTGGCGTTGTCCTTGCCCAAATAAGGGTGTTGTCCAG ACAAAAGCTACAAGGTGGACTAAAGAAATGATCACCACTCAGTTACAAAATGAAAGGGCTGCTGAGAGCAATGTTGTTGT TAATGATAACAAAATGATCAAGGGATCACCGGTATCTTCACCTTCTTCAGAGAATAACAATATTGATAATCCTTTGGATT TCATGGCAGATTTTGAGATTGATTGTGATTTCTTTACGGAGTTACTCAAGATGGATTTACCTGAACTATCTTCCTTCGGA AATAACATGCTGCAAGGTAATAATGGTAACCCTAGTACAGTTGAGTTTGACAATGGTAATTTGTCTCCAGGATCATCCGA TGAAAGTCACTTCCCTTGGGGTGATTCTTTATATGATAGTACAGGTTTTGATTTTCAATCAGTGGCAACTTTTATGGAGT TCGGATTGGATTGGCTATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0415400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRSPCCLKEGLNKGAWTAMEDKILTEYIQIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLKPGIKRGNITNDEEELIIR LHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLNQSGGASKCSMTNCGARSSLVQHDQNIVKTKEWRCPCPNKGVVQ TKATRWTKEMITTQLQNERAAESNVVVNDNKMIKGSPVSSPSSENNNIDNPLDFMADFEIDCDFFTELLKMDLPELSSFG NNMLQGNNGNPSTVEFDNGNLSPGSSDESHFPWGDSLYDSTGFDFQSVATFMEFGLDWL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 288 288 2.5E-92
IPR015495
PANTHER
PTHR10641:SF1130
1 288 288 2.5E-92 –
ProSiteProfiles
PS51294
9 61 53 15.345
IPR017930
Gene3D
G3DSA:1.10.10.60
11 67 57 8.5E-18 –
SUPERFAMILY
SSF46689
12 108 97 1.76E-28
IPR009057
SMART
SM00717
13 63 51 1.5E-13
IPR001005
Pfam
PF00249
14 61 48 5.7E-14
IPR001005
CDD
cd00167
16 61 46 2.13774E-10
IPR001005
ProSiteProfiles
PS51294
62 116 55 23.856
IPR017930
SMART
SM00717
66 114 49 2.8E-15
IPR001005
Pfam
PF00249
67 110 44 1.7E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
70 139 70 4.0E-18 –
CDD
cd00167
71 112 42 1.43799E-11
IPR001005
MobiDBLite
mobidb-lite
242 268 27 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0415400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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