Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0423600.1

Overview

Field Value
Gene ID LotjaGi3g1v0423600
Transcript ID LotjaGi3g1v0423600.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT3G13890.2 myb domain protein 26; Swiss-Prot: sp|Q9SPG3|MYB26_ARATH Transcription factor MYB26; TrEMBL-Plants: tr|A0A0L9TIJ6|A0A0L9TIJ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0423600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:83297621..83298022) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGACATCACTCTTGCTGCAGTAAACAGAAGGTCAAAAGAGGGCTTTGGTCACCTGAAGAAGATGAAAAACTCATCAA CTACATCACAACTTATGGACATGGTTCCTGGAGCTCTGTCCCAAAACATGCTGGTAATTTGTAATTACCAGTACTACTTC TCTGTTTTCTTCATCATCTTCATCTAAAAAACTTGTGAACTTCTAAATTAAATGTTCATTTCATTGTGTGCAGGCTTGCA GAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATCTAAGACCTGACTTGAAACGTGGAAGTTTCTCTCCTCAAG AAGCATCCCTAATTATAGAACTCCACAGCATTCTAGGCAATAGGTAATACCATTGCTGTAGCCAGATGTTTTTTTCCCCT GA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0423600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACATCACTCTTGCTGCAGTAAACAGAAGGTCAAAAGAGGGCTTTGGTCACCTGAAGAAGATGAAAAACTCATCAA CTACATCACAACTTATGGACATGGTTCCTGGAGCTCTGTCCCAAAACATGCTGGCTTGCAGAGATGTGGAAAGAGTTGCA GATTGAGATGGATAAACTATCTAAGACCTGACTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCATCCCTAATTATAGAA CTCCACAGCATTCTAGGCAATAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0423600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGHHSCCSKQKVKRGLWSPEEDEKLINYITTYGHGSWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEASLIIE LHSILGNR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF656
1 88 88 2.3E-56 –
PANTHER
PTHR10641
1 88 88 2.3E-56
IPR015495
ProSiteProfiles
PS51294
9 65 57 24.896
IPR017930
Gene3D
G3DSA:1.10.10.60
11 67 57 8.1E-21 –
SMART
SM00717
13 63 51 8.5E-14
IPR001005
Pfam
PF00249
14 61 48 8.7E-17
IPR001005
SUPERFAMILY
SSF46689
16 88 73 2.03E-22
IPR009057
CDD
cd00167
17 61 45 7.62603E-13
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0423600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…