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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0424400 |
Transcript ID | LotjaGi3g1v0424400.1 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83368252..83372013) extracted from Lotus japonicus Gifu genome v1.2.
AGCCAGCGTCACCCGAATAGCATCAATAATATCACGATGCCAATAAGCACTCATATCACAGTTCAAACCCAACACATAAG CTACCTCCATGTGTCCACAATGCCCCGAATGCCCGACTCCCAAACATACTTCATGCCGGAGCGAAGACTAAAATCAAACT AGCTGTAATCACGAGGTTAAAGATCAAACTTTGTTTAGGAAGATACTAACCACAAATTCTCATAAAAACCCATGCACTAA TTGGTTTATTCAATTGAACTGAAACAGAACCAAGATCCTCACCTATTGGACGAGGTGGATCCGTCCCTGGTATAGACTGT GGCTGAGCAATAGGAAGAAAATGCCGAATCCTAGTCTCCCTGAGGAATTGATACAGGAAATTCTGTTGAGGTTGCCGGTG AAATCTCTTGTACGCTTCAAATGCGTGTGTAAGTCATGGCTCTCTCTTATTTCCGATCCCAAATTCGCAAAATCGCATTA CGACTTAGCCTCTGAACCCACCTATCGATTTCTCTTCATATCAACTTCTGATTCCCAAGTGCAATCCATAGACATAGAAG CATCACTTATTGATCATGATTCTCCAGTATTATCAACTCACGTTCTTCCTCACCCTGTTTCTGCTTGGTCTATTAGTAAC AGTCGAATTTATGGTTCTTGCCGAGGCTTTTTACTTTTGAACTACAGGCAGCGTGATCTCCTTGTGTGGAATCCATCAAC AGGTGCTTTCAAACCAATACCCTACCCACATTCGAATTCCCTATACGGATTTTGGTATGATGCATCAACAGATGATTATC TGGTTCTTTTTATGAAAATTCCATATGCCCCTGATTGGAAAACAGATATTGATATTTTCTCATTGAAAACCAATTCGTGG GATCAAATTGAGGGTTTCAAATTCCCATATTGGATTACCCGGGCTAGAACTGAAGCTGGTCTTCTTTTAAATGGAGCTCT TCATTGGTTGGTTTACTCTTGTGATTATGATTGTGTCATAATTGCTTTTGATTTGATAGGAAGGAGTTTATTTGAGATTC CTTTACCATATGGTATACATACGGAAGATATCGAAGGAGTTCATCTGAGGGTTATGGGAGATTGTCTTTGTCTGTGTAAT CCTAATAGTAGTGATCGTGCAATGGCTGAGATATGGATGATGAAAGAGTATAAAGTGCACTCATCTTGGACTAAGTCATT TGTTCTGCCCACTGATAACATCCCTCGTAACTTTTTTCTTCCAATGTGCTTCACCAAATCTGAAGGATTATTTGGATCAA ATTGCAGTGGAAGTTTAGTGAAATTTAATAGCGAAGGAGTTTTAACTGAACATGCCGCATGCAGAAGTAAGTCTTTCAAA CTGGATCTACTAGAGTTTGCCGTGTATAGAGAAAGCCTACTCTCCCTCCCTGGTGACTTTGGGGAATCAAGTGAAGATGG CCAACAATAATAGACTAGAAGAATTACGGTACGCAATGCTCTGCTATCCTTTTCACCAGTCTGTTACTTTTCATCTTTGC ATTGTGAAAAATTAAAAACTATATTAGTACATACTATTTTGCAGTTGCGCCTTCATTCCTTTTGCCCCTCTCAATTAATG TTATGAATATATCTATATTTCTTCCTTATATGTCCTTCTTTCTAGATTCGTGATCTTCATCAGATGTTTTATAACTTTAG ATATATGGTGGCTTGGTTTTAGTCCTTGTTTGGTGATAGGAATGCAGGGTTAGTCAGGAATTGTTTGTTGTTAGAAAGTT AGTTAGACAGTTATAAGGCATGTTGCCTATAAATAAGAGAGGTTAGTGCACATTAGGGGTATCTTGTTATTCAGTTAAGG AATTGGGTTAGAGAGAGAAGTGGTTCTCTTTCTAGGGTTAGGGAGGGTGTTTGGCATCTCTCTCATGTATCTTCTCTGAT TCCCAAATTGGGAATTAGGGTTCTTTTACAGAAATAGAAACAGTTCTTGGTTGAGTTCTATCATTTGGAACTAGCTTTAC CTTAAATGTTATCCCCTATATAAGGGTATTGTGTAGTAACTAGTATTTAATACCATGTGACAATAGCTAAAGTTAAGAAA CTTGCAAAGGGAGAGTGAAGATAAAAACAAAGATATAACATAACAAACATAAAAATGAGAGTATGAGTTGGTTATGGTTA GTTGGTTACTTTGGAGTTGAAAGCATATAATTGGTTAAGGGAGGATACAATTCTTTGTAATTTGGCTCTATTCTACCCAT TCCAAAAGCTATATTTGAATGCTGTCAGGAAAAACAGCATGTGCAAACTTGCATTGAAAGGTTGTAAACAACATAATGTC TAATATTCCCTTCCAAAACCAGCAATGTCTAAGGTTGCTTCATTTTGAACAACAAAAGGAAATTGTAGCAGGTGTAGCCA TGTTACTTAATGGCTTTGGTCAATTGGTCTCAGCAATGTTGGTCAATTAGTTGGAGCTGTCTCTCACTAGTCATGATCAA AATGAAACAGATAATTAATTAGTCCAATTCGTTTTATTTCATAGATTTTAATTACTATAAAATATTTTTTATTACAGTAG TCTATTGAAACTATATGATGGAAGGAAATGGAGAGAATATATAGGGGCAGCTGGAGGCAGGAGAGTGAGTAGTGGTGAGC TGAGTAGTTTATTACAGGAAATTGCAGCAGGTGTAGCCAAGTTAAAACAATGACTTTTGAACTAAGCCCTAAGCAGAAGA AAAAAGAAATTAAATACTAAATGAAATTATATGATGAAAGAAAATGGGGAGAGCTTGGACCCGAATTTTGTGATGATGTT AGAAAAACAAGTTTAGAATGCGATTCAATTATTTATCCTTGTATTATTGCACAGGAGAGAGTCTTGATGCAGTTAGAGAT CTTCATGAAAATATTGATAATATTGATGTACAATTCCCTGCCTAATCAAATTTCGTTATCTTAACAGAAGAAGCATGGTT TCTGAAGAACTGAGGCTCAATGGACTTGAAAGTGGCTTTAATTATGCAGACTTGTACTGCATCACAATATTGGAATTTAA AAGGAGCATGATTTCTGTTTAGTTTTCCTTTCATACTTGAAACAATCGTTGTGTTGTTGGTATATTTCTTCCATAATGAT CAAAATTATTAATGCAACTCACTGGTAGGTGAGTGCTGATTTTATCCCTAGATTTCCATTTGTTTTGGGTGAGTGATATT TACATCTGTAAGCACACATGTCCCTGGAAGCCTATTTTCAGTATTTTGTCTGGTTTTGGGTGGTAATTTCAGTGTTACAT CTACTTGTTAATTGATATTTTGTGAAACTTAATTGCTTTTAGTTTGAGTTTGGCTTGGCAGTGCTGCTATTGTCTCAGGT TATGTTCAATATTATGGCTCTCCTTTGATTCACTTGTAACAGTGGTCAATCATGCTCAATGTTTTTAAATATGTCCATGA CATCAAAACCAAATGATTTTTTACCAAATGTGCTGCAATTTACATTGCATTGACCGAGATTGTTCAATTATATAATACAG TATCTATATAATATAATACTCCCTCCGTTCCGTTCCAAAATGTAAGTTGTTTTAGAATTTGTAATATATTCTGAAATATA AGTTGTTTTGCAAACCAATGCATTTTTTTTCTCTTTCTTCCTCATATACCCTCATTTAATATTATATTCTTTAATTATCA CCTCTAATTTTCACATATCACAACTCTCACTATCAACTTAACCAATAATAACATTTCTCTCTCCTTAATATAACACAACT TT
CDS sequence (LotjaGi3g1v0424400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAATCCTAGTCTCCCTGAGGAATTGATACAGGAAATTCTGTTGAGGTTGCCGGTGAAATCTCTTGTACGCTTCAA ATGCGTGTGTAAGTCATGGCTCTCTCTTATTTCCGATCCCAAATTCGCAAAATCGCATTACGACTTAGCCTCTGAACCCA CCTATCGATTTCTCTTCATATCAACTTCTGATTCCCAAGTGCAATCCATAGACATAGAAGCATCACTTATTGATCATGAT TCTCCAGTATTATCAACTCACGTTCTTCCTCACCCTGTTTCTGCTTGGTCTATTAGTAACAGTCGAATTTATGGTTCTTG CCGAGGCTTTTTACTTTTGAACTACAGGCAGCGTGATCTCCTTGTGTGGAATCCATCAACAGGTGCTTTCAAACCAATAC CCTACCCACATTCGAATTCCCTATACGGATTTTGGTATGATGCATCAACAGATGATTATCTGGTTCTTTTTATGAAAATT CCATATGCCCCTGATTGGAAAACAGATATTGATATTTTCTCATTGAAAACCAATTCGTGGGATCAAATTGAGGGTTTCAA ATTCCCATATTGGATTACCCGGGCTAGAACTGAAGCTGGTCTTCTTTTAAATGGAGCTCTTCATTGGTTGGTTTACTCTT GTGATTATGATTGTGTCATAATTGCTTTTGATTTGATAGGAAGGAGTTTATTTGAGATTCCTTTACCATATGGTATACAT ACGGAAGATATCGAAGGAGTTCATCTGAGGGTTATGGGAGATTGTCTTTGTCTGTGTAATCCTAATAGTAGTGATCGTGC AATGGCTGAGATATGGATGATGAAAGAGTATAAAGTGCACTCATCTTGGACTAAGTCATTTGTTCTGCCCACTGATAACA TCCCTCGTAACTTTTTTCTTCCAATGTGCTTCACCAAATCTGAAGGATTATTTGGATCAAATTGCAGTGGAAGTTTAGTG AAATTTAATAGCGAAGGAGTTTTAACTGAACATGCCGCATGCAGAAGTAAGTCTTTCAAACTGGATCTACTAGAGTTTGC CGTGTATAGAGAAAGCCTACTCTCCCTCCCTGGTGACTTTGGGGAATCAAGTGAAGATGGCCAACAATAA
Protein sequence (LotjaGi3g1v0424400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNPSLPEELIQEILLRLPVKSLVRFKCVCKSWLSLISDPKFAKSHYDLASEPTYRFLFISTSDSQVQSIDIEASLIDHD SPVLSTHVLPHPVSAWSISNSRIYGSCRGFLLLNYRQRDLLVWNPSTGAFKPIPYPHSNSLYGFWYDASTDDYLVLFMKI PYAPDWKTDIDIFSLKTNSWDQIEGFKFPYWITRARTEAGLLLNGALHWLVYSCDYDCVIIAFDLIGRSLFEIPLPYGIH TEDIEGVHLRVMGDCLCLCNPNSSDRAMAEIWMMKEYKVHSSWTKSFVLPTDNIPRNFFLPMCFTKSEGLFGSNCSGSLV KFNSEGVLTEHAACRSKSFKLDLLEFAVYRESLLSLPGDFGESSEDGQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 46 | 46 | 10.849 | ||
Gene3D | 3 | 88 | 86 | 3.9E-10 | – | |
PANTHER | 4 | 353 | 350 | 2.6E-94 | – | |
PANTHER | 4 | 353 | 350 | 2.6E-94 | – | |
Pfam | 4 | 42 | 39 | 2.7E-11 | ||
SUPERFAMILY | 5 | 68 | 64 | 1.44E-15 | ||
SMART | 6 | 46 | 41 | 4.3E-9 | ||
SUPERFAMILY | 45 | 261 | 217 | 1.57E-6 | – | |
TIGRFAM | 105 | 297 | 193 | 8.1E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0424400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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