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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0424400 |
| Transcript ID | LotjaGi3g1v0424400.6 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83372601..83376480) extracted from Lotus japonicus Gifu genome v1.2.
AAATTATATGGTTAAAAAAAAAGAAAATTTATTTGTTTTCTATCACCAGTTCTCACACACTCATCACGTGATCTCTCTCA CGCCTTTCACTCTCATTCTCTGATTTCACGATACAGCCATACAGGACGCATTCTCACCGGCCACCACCACGCCGTCCGCC GCACCACCACGCCGTCCGCCACACCACCACTGTCCAGCCGTGCCTCTGGCTCTGCGGTTCTACTTCTACAGGTATGGCTG ATTTGAGTGATTTCCCTAACCCTAATTTCCTCAAATGTCATAATTTCTCAAGCATGAATCATGATACATGAAATCAAAGT AGAAGAAAGAAACCTCTAATCACAGATTCACGGTATTGTAAACTGAAATTCTTTGTTCCTTGTGATTGGGTAATTTGGTA CTGCAATTCCTTTCCCAAGGTGTCATGGCTCTTGTCTGCTACTTGTTTCTGCTTCAGGTCCCTGTTTTGCAGTTTTGCTC CAAGTTGAATTCGTGGAAGTTGGCTTTGTGTTTTGATAATTGGGTATGCGTTGGAATTTTAGATTGAGGATATATTGATA ATTGATCCAATTGTGTTAAGGTTGTCATGTTGTGTGGATTGAGAACCTTTGCTGTTTTTTTTTTGGGTCCTTTTGTCTGT TGCATAAATAGCAGTTTAGGCACTTTTTTCCTATTCTCTCATGGTTTTATCTATAATATTTTTCTTTTAGCCTATGATTG CTTTTATGTTTAGCCTCACTGATATTCAAGGTCTGGATCCGCCCCTGTGCTGAGCCCTAGTCTCCCTCTCCCTAAGGAAT TGGTAGAGGCAATTCTGCTGAAATTGCCGGTGAAAACTCTTATGCGCTTGAAATGTGTTTGTAAGTCATGGCTCTCTTTT ATTTCTGATCCCAAATTTGCTAAATCCCATTACTATCTTGCTGCTGAACCCACCCATCGATTTCTCTTCATATCATCATC TGGTTCACAACTGCAATCCATAGACATAGAAGCATCACTTGATCACTTTGATCATTCTTCACTATCAAATCACATTCTTC CACACCCATTATCCGGACACCAATTTGATAATTCGTTATATAATAGCATTCTAATTTATGGTTCTTGCCGTGGATTTTTA CTTTTAGACCACGGACATCGTAATCTCATTGTGTGGAATCCATCAACGGGTGTTCGCAAACCAATATCGTACCCAAATGT TAAGTTCATGTATGAATCCTTATCAGGATTTGGGTATGATGCATCAACTGATGATTATCTGGTTCTTCTTATGTCAAAGC CCAAGATTCGATCACATTCTTCTGATTGGAAAACAGATATTGCGATTTTCTCTTTGAAAACCAATTCATGGGACCAGATT AAGCGTGTCAAATTCCCATATCGGAGTTGCCATCCTATAACTGATGCTGGGTTACTTTTAAATGGAGCTCTTCATTGGTT GGTTTATTCTCGTGATGTGCATGGGGTTGTAATCATTGCCTTTGACATGATTGAAAAGAGTCTACTAGAGATTCCTTTAC CTTCTGGTATAGACAAGGGATTAGCATTTCAATTTAGAGGAGGACTTTATTTGAGGGTAATGGGAGATTGTCTTTGTCTG TGTTATACTGGTTGTAGTTATCGCGTAATGGCTGAGATATGGATGATGAAAGAGTATAAAGTGCACTCGTCTTGGACTAA GTCATATGTTCTGCCCACCGATAACATCCCTCATAACTTCTTTCTTCCAATGAGCTTCACCAAATCTGAAGGATTATTTG GATCAAATTGCAGTGGAAGTTTAGTGAAGTTTAATAGCGAAGGAGTTTTAACTGAACAAGCCGCATGCAGAATTAAGTCG TTCAAATCAGATCTATTAGAGTTTGCGGTGTATAAAGAAAGCCTACTCTCCCTCCCTGGTGACTCTGGGGAATTAAGTGA AAATGGCCAACAATAATAGACTAGAAGAATTACGGTACGCAATGCTCTGCTATCCTTTTCACCATTCTGTTACTTTACAT GTTTGCATTGTGAAAAATTAAAAGCTACATTAGTACATACTATTTTGCAGTTGCGCCTCTATCCCTTTTGCCCCTCTCAA TTAATGTTATGATTTTGACAGGCAATTAGATCGATATATAATGGTTGCCAGCCTTATAAGTTATATCTATATTTCTTCCT TATATGTCTTTCTTTCTTGATTCGTGATCTTCATCAGAAGTTTTATAACATTAGATATATGGTGGTTTGGTTTTAGTCCT TGTTAGGGCCTAGCTTTACCTTAAATTTTATCCCCTATATAGTGTATTGTGTAGTAACTAGTATTTATTACGAGCTGAAA TCTCAGCTAAAGTGATCAAAACAAAGATATAACATAAAAAACACAAAAACAAGAGTGTATGAGTTGGTTATGGTTAGTTG GTTACTTTGGAGTTGAAAGCATATAATTGTTTAAGGGAGGATACAATTCTTTGTAATTTGGTTCCATTCTATCCATTCCA AAAGCTATATTTGAATGCTGTTAGGAAAAACAGTGTGTACAATCTAGCATTGAAAGGTTGTAAAGAACATAATGTCTAAT ATTCCCTTCCAAAACCAACAATGTCTATGGTTGCTTCATTTTGAACAACAAAAGGAAATTGTAGCAGGTGTAGCCATGTT ACTTTAGTAGTTTTGGTGTGGGTGTGGCTAATGGCTTTGGTCAATTGGTCTCAGTTATGTTGCTGCTCTGAAACAAAATG GGGCAGTTGAGCTGTCTCTCACTCCTTGGCATGATCAAAATGAAACAGATGATTAATTAGTCCATTTTTTTTATTTCATA GATTTTAATTACTATAAAATATTTTTTATTACAGTAGTCTATTGAAACTATATGATGGAAGGAATGGGAGAGAGTATATA GGGGCAGTTGGAGGCCGGAGGGTGAGTAGACAGTAGTGGTGAGCTGAGTAGTTTAATACAGGATGAAGGCTTGGTTCCCA ATTTTACAATGATGTTAAAAGAGAAGTTTAGAATGTGATTTAATTGTTAGTATAATAGAGTCTTGATGCAGATAGAGATC ATGAAAATACTGATAATATTGATGTACAATGCCATGCCTAATCAAATTTCTTTTTGTTTTACCAGGGGTTGGGGAAAGAG TGGTTCGACCATGACTTATTTCTCAAGGATATCACTCAGCTCTTTTACCACTTGAGCTATCTATAGAGGGGGGACTAATC AAATTTCATTATCTCAACAGAAGAACTGATGCTCAATGGGCTTGAAAGTGGCTTTAGTTATGCATCTCATTAATTGCTGG AATTCTAGAACTAGCAGTAGCATGGTTTCAGTTTAGTTTTCTTTTCATACTTGAAACAATCATTGTTGTTGCATATTTCG TTCTTTAATGATCAAAATTACAATGCAACTCACTGGTAGGTGAGTGTTGATTTTATCCGTAGTTCCTGGAAGTCTATTGT CAGGATATTTTATCAAACCCAAATGATATTTTTTCCGATGAAATACATTTAAATGTACTGCTACAGTTTACATTTATATT GACCAAGATTATTCAGGTCTATATACTCTACAATTTATACCATATTTATACCGAGATTCTCATTCAATTCGACATTTTGG TAATTGCTTTGACGCATGCTTTTGGGTCGGCTGAGATATTTTTGGATTTGGTGGCTTTGTAACCGGCCGGAACAGGAGTC TCCTAGTTTAGCGTGTCAAATTTTGGTATGTCAAACTTTGTTAATGAACTGCTTGTTTCGCTTGGTCATTTGAACAAGAT TCCTCATGTCTTCAGTAGGGCCGGAGCCATTGCGGTGGCTCACCAGGACCACCAACCTCGACATCTTTTCGAATTTTATC GACCCCTGTAGTAAAGTATAAATATAAAATGAGATAACAC
CDS sequence (LotjaGi3g1v0424400.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTGAAATGTGTTTGTAAGTCATGGCTCTCTTTTATTTCTGATCCCAAATTTGCTAAATCCCATTACTATCTTGC TGCTGAACCCACCCATCGATTTCTCTTCATATCATCATCTGGTTCACAACTGCAATCCATAGACATAGAAGCATCACTTG ATCACTTTGATCATTCTTCACTATCAAATCACATTCTTCCACACCCATTATCCGGACACCAATTTGATAATTCGTTATAT AATAGCATTCTAATTTATGGTTCTTGCCGTGGATTTTTACTTTTAGACCACGGACATCGTAATCTCATTGTGTGGAATCC ATCAACGGGTGTTCGCAAACCAATATCGTACCCAAATGTTAAGTTCATGTATGAATCCTTATCAGGATTTGGGTATGATG CATCAACTGATGATTATCTGGTTCTTCTTATGTCAAAGCCCAAGATTCGATCACATTCTTCTGATTGGAAAACAGATATT GCGATTTTCTCTTTGAAAACCAATTCATGGGACCAGATTAAGCGTGTCAAATTCCCATATCGGAGTTGCCATCCTATAAC TGATGCTGGGTTACTTTTAAATGGAGCTCTTCATTGGTTGGTTTATTCTCGTGATGTGCATGGGGTTGTAATCATTGCCT TTGACATGATTGAAAAGAGTCTACTAGAGATTCCTTTACCTTCTGGTATAGACAAGGGATTAGCATTTCAATTTAGAGGA GGACTTTATTTGAGGGTAATGGGAGATTGTCTTTGTCTGTGTTATACTGGTTGTAGTTATCGCGTAATGGCTGAGATATG GATGATGAAAGAGTATAAAGTGCACTCGTCTTGGACTAAGTCATATGTTCTGCCCACCGATAACATCCCTCATAACTTCT TTCTTCCAATGAGCTTCACCAAATCTGAAGGATTATTTGGATCAAATTGCAGTGGAAGTTTAGTGAAGTTTAATAGCGAA GGAGTTTTAACTGAACAAGCCGCATGCAGAATTAAGTCGTTCAAATCAGATCTATTAGAGTTTGCGGTGTATAAAGAAAG CCTACTCTCCCTCCCTGGTGACTCTGGGGAATTAAGTGAAAATGGCCAACAATAA
Protein sequence (LotjaGi3g1v0424400.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLKCVCKSWLSFISDPKFAKSHYYLAAEPTHRFLFISSSGSQLQSIDIEASLDHFDHSSLSNHILPHPLSGHQFDNSLY NSILIYGSCRGFLLLDHGHRNLIVWNPSTGVRKPISYPNVKFMYESLSGFGYDASTDDYLVLLMSKPKIRSHSSDWKTDI AIFSLKTNSWDQIKRVKFPYRSCHPITDAGLLLNGALHWLVYSRDVHGVVIIAFDMIEKSLLEIPLPSGIDKGLAFQFRG GLYLRVMGDCLCLCYTGCSYRVMAEIWMMKEYKVHSSWTKSYVLPTDNIPHNFFLPMSFTKSEGLFGSNCSGSLVKFNSE GVLTEQAACRIKSFKSDLLEFAVYKESLLSLPGDSGELSENGQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 345 | 344 | 4.8E-80 | – | |
| PANTHER | 2 | 345 | 344 | 4.8E-80 | – | |
| SUPERFAMILY | 2 | 41 | 40 | 2.18E-5 | ||
| SUPERFAMILY | 64 | 186 | 123 | 4.18E-5 | ||
| TIGRFAM | 87 | 298 | 212 | 1.3E-27 | ||
| Pfam | 191 | 299 | 109 | 4.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0424400.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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