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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0424500 |
| Transcript ID | LotjaGi3g1v0424500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83382640..83385672) extracted from Lotus japonicus Gifu genome v1.2.
GTTCGGTTTAGGTAAAGAATTGAATTGAACCAGAAAAACCCAGTTTGGCCCTCAGGAATACCCTATAATATGAATCGTTG TTTTTAAATGAACAGCCCTAATATTTTGAACTAGAACGATCATGATGAGTAATAGGAACAAGATGCTGAACCCTAGTCTC CCTCAGGAATTGATAGAGGAAATTCTGGTGAGGTTGCCGGTGAGATCTCTTTTGCGCTTCAAACGTGTTTGCAAGTCATG GCTCTCTCTTATCTCCGATTCCAAATTTACAAAATACCATTACGATCTTGCTGCTGAACCCACCCATCGATATCTCTCAA CTTATGACTCCAAGGTGCGATCCATAGACATAGAAGCATCACTCGGTGATCATTCTTCAGTATCAACTCACGTTCTTCCG CACCCGTTTCATGATTCGTTTTATAATAGGATTCCAATTTTTGGTTCTTGCAGAGGCTTTTTACTTGTACGCTACGAATA TCGTTATCTCCTTGTGTGGAATCCGTCAACGGGTGTTCGCAAACTAATATCCTACCCACATGCTAAGTTCAAGTATGATT CCCTATACGGATTTTGGTACGATGCATCAACTGATGACTATCTGGTTCTTCTTATGGTAGCGCCTGAGTTTCGACCAGAT TTGGCTGATTGGAGAACAGATATTGTGATTTTCTCATTGAAAACCAATTCATGGGACGAAATTGAGGATTTCAAATTCCC ATATCAGACCTCCCATCCTAGAACTGAAGCTGGGCTACTTTTAAATGGAGCTCTTCATTGGTTGGTTTATTCTCGTGTTA CATATAATTTTGTCATCATTGCTTTTGATCTGATACAAAGGAGTGTACTAGAGATTCCTTTACCATATATTAATATACAA TCAGCATTTCAATATAGAATATTTTATTTGAGGGTTATGGGAGATTGTCTTTGTCTGTGTAATCCTGGTAGTAGTAATCG TGCAGTGGCTGAGATATGGATGATGAAGGAGTATAAAGTGGACTCATCTTGGACTAAGTCATTTGTTCTGCCCACTAATG ATATTCCTCTTGACTCCTTTCTTCCAATATGCTTCACCAAATCTGAAGGACTATTTGGATCAAATTGCAATGGAAGATTA GTGAAATTTAACAGCGAAGGTGTTTTAAGTGAACATTGCACATGGAGGGAAAATTCGATTTTCAGAGAGAGTTTACTACA GTCAGCTATTTATAGAGAAAGCCTACTCTCCCTCCCTGGTGAATTTGGAGAATTAAGTGAACATGGCCAACAAGAAAGAC AAGATGTCTCTCCGGGTACGGAATGCTCTCTTATCCTTTTCATCATTTAATTTTGTTACTTTCATCCTGTATTGTGAAGA ATGAAAAGCTATATTAGTACATTCTATTTTGCTCCTTTATATTTTTTGCCCCTCTTAATGTTATGATTTTTACAGGCAAT TAGTTCATTATATTATGGTTGCCTTATATCTATGTTGTTTCCTTCTTTTATGTCCTTCTTTCAAGACTAGTGATCTTCCT CAGAAGTTTTCTAACTGCAGAAGATATATTGTTATGGTTGCTTCATTTTGAAGTCTAACAAAAGGAAACTGCAGCAGATG TAGCCAAGTTAAAGCCATGCTCCTTTAGTAGGGTGTGGCTAATGGTTATGATCAGACTTGTATTGCATCACATTAGGGAA TTCTAGAATGAGCATGATTTCTGTTTAGTTTTCTTTTCATACTTGAAGTAATCATTGTTATTATATTTCATTCTATATAT GCAACCACACATGTTCCTGGAAGCCTATTGTTAGTATTTTGTTTGGTTTTGGTGTGGTAATTTTCAATGTTACATGTGCT CGTGTCAATTGATATTTTCCGAACCTTCATTGTTTTTAGTTTGCGTTTGGCTTGGCCGTGCTGCTGGTGTCTCATATTAT GTTCAATATTATGGTTCTATATATCTCCAGAAATGCTAATTATTACGAATCTACTCCAACCGAAATTGCCGAACAACGTG TGAATATATACTTAACTTTTTCTCTCTCCTGATAACCAACCAACCATGTGAATCACTTCAGACAACATTGCAGAGAGGGT AGGAACTAGGAAGAGTATGCGATTGGTATGGATGGCAGTTGGTGCTCTTGCATTTGGTCGGTATGGCGTGCTAGAAGAAA TGAGGTAGTGTTTAATTCTGCAGTTTTTGATGTTGAAATAATTCTGGGTTCAATTAAGTTCCTCCCATGGAAGTGGCTTA GATGCAAGGCAAATGGATTTTATACAGCCCAATTTGTGTCTTGAAGGATTAGTGTTATAATGACACCATAAGGGAACGAG AAAGCAGAGTCTGAAAGGGCTGTTGGATTAGTGCTATTCCAAAGAAGAATTGTGTTAATTTTAGATGGGAGATATCTTGT GCAAATGTTCACATCAAGTCAGGTGATCACCCTATCCTACCAGTCAAGTCATATGTTGGATGCATACCCAACGTGATCAA TTCAGCAAAGTCCATTGTCATTCACTTAGGAATCTAAATCATGATTCTACTTGGTCTTGGAGTAGTTGCTCCACTCAAAC ATTAGAAGTGCATTTCATTTCTCAAGTTACCTATCATCATTTCCTCATCAATTGTTCACCAAATTGAGGAGTCTGCTGTG GAATACGTACCAAAGGACACTTCTAATGATCAATCTAGAGTCCTTAATTCCATTACTGTAGCTACTAAACCTCCTACCGA CCTAAGCCCCGCTCATAACTTCGTCGGGGAATGGAGAATCGGTTTGCAAATCTTGAGATGAAGATGGATCTTCTGATCAA ACATCTCTTTAAATGACTTTTCATACTTCAACTATGTCTGTTATATCTACCATATTTGAACTTATGTGGCTATAACGTTT ACTACTCTTTTGCCATTGTAAATTATACTTTGTCATCTCATCTCTCCAAAAAAATTGATAAATATGACAAGTATGGAAGT CTTCAGTTGATTGTATTGTAAGTTAGAAATGATTTCCAAATTTATATTGAGAAATCATATTTTGTACAAGAGG
CDS sequence (LotjaGi3g1v0424500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTAATAGGAACAAGATGCTGAACCCTAGTCTCCCTCAGGAATTGATAGAGGAAATTCTGGTGAGGTTGCCGGT GAGATCTCTTTTGCGCTTCAAACGTGTTTGCAAGTCATGGCTCTCTCTTATCTCCGATTCCAAATTTACAAAATACCATT ACGATCTTGCTGCTGAACCCACCCATCGATATCTCTCAACTTATGACTCCAAGGTGCGATCCATAGACATAGAAGCATCA CTCGGTGATCATTCTTCAGTATCAACTCACGTTCTTCCGCACCCGTTTCATGATTCGTTTTATAATAGGATTCCAATTTT TGGTTCTTGCAGAGGCTTTTTACTTGTACGCTACGAATATCGTTATCTCCTTGTGTGGAATCCGTCAACGGGTGTTCGCA AACTAATATCCTACCCACATGCTAAGTTCAAGTATGATTCCCTATACGGATTTTGGTACGATGCATCAACTGATGACTAT CTGGTTCTTCTTATGGTAGCGCCTGAGTTTCGACCAGATTTGGCTGATTGGAGAACAGATATTGTGATTTTCTCATTGAA AACCAATTCATGGGACGAAATTGAGGATTTCAAATTCCCATATCAGACCTCCCATCCTAGAACTGAAGCTGGGCTACTTT TAAATGGAGCTCTTCATTGGTTGGTTTATTCTCGTGTTACATATAATTTTGTCATCATTGCTTTTGATCTGATACAAAGG AGTGTACTAGAGATTCCTTTACCATATATTAATATACAATCAGCATTTCAATATAGAATATTTTATTTGAGGGTTATGGG AGATTGTCTTTGTCTGTGTAATCCTGGTAGTAGTAATCGTGCAGTGGCTGAGATATGGATGATGAAGGAGTATAAAGTGG ACTCATCTTGGACTAAGTCATTTGTTCTGCCCACTAATGATATTCCTCTTGACTCCTTTCTTCCAATATGCTTCACCAAA TCTGAAGGACTATTTGGATCAAATTGCAATGGAAGATTAGTGAAATTTAACAGCGAAGGTGTTTTAAGTGAACATTGCAC ATGGAGGGAAAATTCGATTTTCAGAGAGAGTTTACTACAGTCAGCTATTTATAGAGAAAGCCTACTCTCCCTCCCTGGTG AATTTGGAGAATTAAGTGAACATGGCCAACAAGAAAGACAAGATGTCTCTCCGGGTACGGAATGCTCTCTTATCCTTTTC ATCATTTAA
Protein sequence (LotjaGi3g1v0424500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSNRNKMLNPSLPQELIEEILVRLPVRSLLRFKRVCKSWLSLISDSKFTKYHYDLAAEPTHRYLSTYDSKVRSIDIEAS LGDHSSVSTHVLPHPFHDSFYNRIPIFGSCRGFLLVRYEYRYLLVWNPSTGVRKLISYPHAKFKYDSLYGFWYDASTDDY LVLLMVAPEFRPDLADWRTDIVIFSLKTNSWDEIEDFKFPYQTSHPRTEAGLLLNGALHWLVYSRVTYNFVIIAFDLIQR SVLEIPLPYINIQSAFQYRIFYLRVMGDCLCLCNPGSSNRAVAEIWMMKEYKVDSSWTKSFVLPTNDIPLDSFLPICFTK SEGLFGSNCNGRLVKFNSEGVLSEHCTWRENSIFRESLLQSAIYRESLLSLPGEFGELSEHGQQERQDVSPGTECSLILF II
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 92 | 91 | 1.7E-9 | – | |
| PANTHER | 6 | 366 | 361 | 2.9E-91 | – | |
| PANTHER | 6 | 366 | 361 | 2.9E-91 | – | |
| ProSiteProfiles | 7 | 52 | 46 | 11.432 | ||
| Pfam | 12 | 51 | 40 | 2.2E-10 | ||
| SUPERFAMILY | 12 | 129 | 118 | 1.57E-15 | ||
| SMART | 13 | 53 | 41 | 4.1E-9 | ||
| TIGRFAM | 108 | 307 | 200 | 3.8E-25 | ||
| Pfam | 212 | 308 | 97 | 1.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0424500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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