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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0426100 |
| Transcript ID | LotjaGi3g1v0426100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT1G55180.1 phospholipase D alpha 4; Swiss-Prot: sp|Q9C888|PLDA4_ARATH Phospholipase D alpha 4; TrEMBL-Plants: tr|K7L7M9|K7L7M9_SOYBN Phospholipase D; Found in the gene: LotjaGi3g1v0426100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83569156..83573003) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAATTGCATTCCAAGGTTCCATTTGCTTCTTCATGTGCAACAAAACTTAACTCACCTATATATATGAAATGTGATAT TTGGTAATGCTAAATTGACACACCAAATCCCTTATACGCGAACACAAATTTCATAGTTCTCTATCTCCTTTCGTGTGAAT ATTTGAAGCTTAAGACAATGGAAGAAACTCCTAAGCTCCTTCATGGAACAATTGAAATTACCATCTTTAATGCCTCACCT TACTCATCTTTTTTTCCCTTCAATGTGAGCTATGTGTATATACGTGTGTGTATGTTATGTTAAGCTATAGCATTAGTTAT ATACGGTGAAGATTCTTTAGTGTCTGCATAAACTCATAACCATGCATGAATTTCTCTTATTTTCAGTGCATATTCAAAAG TGGAAAGCCTGCTTATGTGACCATCAAGGTAGACAACAAGAAGGTTGCAAAAACGAGTCAAGAAAGTGATCGTGTATGGA ACCAAACCTTTCAGATTCAATGTGCTCATCCACCTGAGTCAACTATCACCATTGCACTGAAAACATCATGTTCCACATTG GGCAAATTCCACATCCAGGCCCAACAGCTGTTGAAGGAAGGAAGTTTAATCAATGGGCTCTTCCCTCTCCTCATGGAAAA TGGAGAACCAAACCCAAAACTCAAGTTGAAGTTTGTATTGTGGTTCAAGCCAGCAGAATTGGAACCAAGTTGGGCAAAAG TACTCAGCTATGGGGAGTTTCAAGGGCTGAGGGATGCTGCATTCCCACAAAGGTCCAATTGTCATGTCAAACTTTATCAT GATGCTCACCATTCTCCAGCTTTCCAACCTCCCTCTGATCTATGTGGGACTCCACAAAAGCTTTGGGAGGATGTCTATAA AGCCATTGAAGGTGCAGAATTTATAGTTTACATTGCAGGCTGGTCCTTGAATCCCAAGATGGTTCTGGTAAATATAGTGC ATTTCTAGAAAACCTTCTACAGTTGTTTTTGAAGTTATAATAAATTAATGGAGAGAAACTTTTGTGAGTAGCTTCTGAGT TTCAGAACTTGATGAAAAAGAAATCGATCCAAACATGCTAATAATGTCATGTCATACCTTCCAATTACATTGATATTCAT TCTTCTACAAGTTATGCTCTTTGGCAGGTTAGAGATCCTCATACAGAGATTCCACATGCCAGAGGAGTAAAGCTGGGTGA GCTATTGAAGAAGAAGGCAGAGGAAGGTGTGGCTGTGAGAGTCATGCTTTGGGATGATGAAACATCTTTGCCTTTTATCA AGAACAAAGGTGTGATGAACACCCATGATGAGGATGCCTTTGCTTACTTCAACCACACAAAGGTAATATGCAGAAAATGT CCAAGATTGCACCACAAGTTCCCCACATTGTTTGCTCACCATCAGAAGATAATAACAGTGGACACCAAAGCACCCAAATC CATTGGTGACAGAGAACTCACAAGCTTTCTGGGTGGGTTAGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCAC TGTTTCACACACTCATTAAGGAATCCCATTGCTATGACTTCTACCAAACAGACATTGGAGGAGCAAGCCTCAACAAAGGA GGGCCAAGAGTGCCTTGGCATGATGCTCATGCCAGTGTTACCGGTGAGGCGGCTTGGGATGTGTTAACCAATTTTGAGCA AAGATGGACAAAGCAGTGTGATCCTTCTCTTCTAGTCCCTGCTAGCACATTGGTAAATCTCATGCCTCAAACAAGCTCAA GCACTCCCAAAGAAAGGGATTGGAAAGTTCAAGTGTACAGGTCAATTGACCATGTATCTGTTGGCAAGTTGCTTGGGCAG TTAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAGGCAATTAGGCATGCTGAGAGGTTTATATACATTGAGAACCA ATATTTCATTGGGGGGTGCCATTTGTGGGAGAAAGATAGGGATTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCAC TGAAGGTGGTTAGCAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTCATGCCTATGTGGCCAGAAGGAGTGCCT GAAAGTGAACCTGTTCAAGATATACTTCATTGGACAAGAGAAACAATGACAATGATGTATAGGTTGATTGGAGAAGCAAT ACAAGGGAGTGGGGAACCAGGACACCCATCAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAGCAGAAGGGGAAAG GGGAGTATCTTCCACCAGATTCTCCTCAACCTGGAACACAATACTGGAATGCTCAGAAAAATAGGAGATTCATGGTTTAT GTTCACTCCAAGTTCATGATAGGTATTCTTGCATTATTAGTCCTTCATTATTTTCTTTTCCACTTGTCTGTCTTTTCTTG TTCTTCAGTTAGATTATACAAGAATTCTGGTAGCAGTGTGACAACTGACAAGTGTTAATAATTAACTTTAAAGACATGTA CTTAATTTGGATAAACTTCCAAACAAGGACTCATGGAAAAATCAAAATCAAAATCATTTTGCAATCATGAGTCCTCCAAA TAATAGCTTCTTAAAGTCATGTACTTGTTATAGTTTTTAACTATTTCAAATGTGCAGAAGTGCTTATTTGGAATGATTGT TGCCTAATAATATACTCCATTAACTCCTTTTATATATAGAAGGGTAAACATCAAAGTAACTGAGTATAATGTTTGGAAAT CGTTCTACCTCAAGATAAATTCTGCAAAGTGCATATTTGGATACACGGTGAAAAATCACAGTGAGGCAAACTTACGATGG ACAGAAGCAACTTCCCTTAGCTTTTGTGGACAGAACCAAATTCTAATGTGACTTTGGCTTCTCTGTTGTTTTCCATCATG TATCCAAACATGAACACAAGTAGCTTCTGGGTGCCATAACTACTCTTAGAAAAAATAAGCTAATCCAAAGATGCTAAAAG TGTACAATTGTTGAATTGTGGTATAAGTTTTTTTGCTGCTCACAATTGTTTTCTTGCATGTGCCACCAGTGGACGACCTA TACATGCTAATAGGATCAGCTAATGTGAACCAAAGATCCATGGATGGGGAAAGGGACACTGAGATAGCCATAGGATGCTA CCAGTCTCAAGATGGAGCTGCTAACCAAATGAACCTAGGTGATATTCATGCATTCAGAATGTCACTATGGTATGAGCACA CCAATAGTGCTGAGGAATTGTTCTTGGAGCCAGAAACATTGGAATGTGTGCAGAGGATGAAATCAATAGGAGATCAAATG TGGGAAATCTACAGCAGTGAAGAGGTTGTGGACATGGAGGGTGTGCACCTTGTTACTTACCCTGTGAGGGTTACACAAGA AGGGCATGTGAAGGACCTTGCCGATGGAGTTCACTTTCCTGACACAAATTGTCTAGTGAAGGGGAAGAGATCCAAAATGT TGCCCCATAACTTTACCACTTAGACATGAAGTTGAGATATGAATACACAAACACATTAGGAATCTAACTTAATGTATATG GAAGCTCTTAAAACAAAAACCCTGTATTGAATGAGCATATTTTCATAGTACTGAAGTATGCCGTGTTTACCCTTAAATTT AAAAGTATAACTAGATATCCTAGACTTGTGACATTAAGCATATTCAGATGATTGGAAAGTTCTTGATATCCATTAAGTAC TTCCATTTAGGTTGGGACTCATGACCAATGGGGTGTGAAGTGGAAATATTACTTCTTAGTGTTTGTAAGAAGACATCTCG ATCTCTCAGTGTTTATATATTTTATATAACTAGTTAAAAAATATGTTTTCTCACTTATATATACATCTTTTATAAAAAAG TATTTTTA
CDS sequence (LotjaGi3g1v0426100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAACTCCTAAGCTCCTTCATGGAACAATTGAAATTACCATCTTTAATGCCTCACCTTACTCATCTTTTTTTCC CTTCAATTGCATATTCAAAAGTGGAAAGCCTGCTTATGTGACCATCAAGGTAGACAACAAGAAGGTTGCAAAAACGAGTC AAGAAAGTGATCGTGTATGGAACCAAACCTTTCAGATTCAATGTGCTCATCCACCTGAGTCAACTATCACCATTGCACTG AAAACATCATGTTCCACATTGGGCAAATTCCACATCCAGGCCCAACAGCTGTTGAAGGAAGGAAGTTTAATCAATGGGCT CTTCCCTCTCCTCATGGAAAATGGAGAACCAAACCCAAAACTCAAGTTGAAGTTTGTATTGTGGTTCAAGCCAGCAGAAT TGGAACCAAGTTGGGCAAAAGTACTCAGCTATGGGGAGTTTCAAGGGCTGAGGGATGCTGCATTCCCACAAAGGTCCAAT TGTCATGTCAAACTTTATCATGATGCTCACCATTCTCCAGCTTTCCAACCTCCCTCTGATCTATGTGGGACTCCACAAAA GCTTTGGGAGGATGTCTATAAAGCCATTGAAGGTGCAGAATTTATAGTTTACATTGCAGGCTGGTCCTTGAATCCCAAGA TGGTTCTGGTTAGAGATCCTCATACAGAGATTCCACATGCCAGAGGAGTAAAGCTGGGTGAGCTATTGAAGAAGAAGGCA GAGGAAGGTGTGGCTGTGAGAGTCATGCTTTGGGATGATGAAACATCTTTGCCTTTTATCAAGAACAAAGGTGTGATGAA CACCCATGATGAGGATGCCTTTGCTTACTTCAACCACACAAAGGTAATATGCAGAAAATGTCCAAGATTGCACCACAAGT TCCCCACATTGTTTGCTCACCATCAGAAGATAATAACAGTGGACACCAAAGCACCCAAATCCATTGGTGACAGAGAACTC ACAAGCTTTCTGGGTGGGTTAGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCACTGTTTCACACACTCATTAA GGAATCCCATTGCTATGACTTCTACCAAACAGACATTGGAGGAGCAAGCCTCAACAAAGGAGGGCCAAGAGTGCCTTGGC ATGATGCTCATGCCAGTGTTACCGGTGAGGCGGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGT GATCCTTCTCTTCTAGTCCCTGCTAGCACATTGGTAAATCTCATGCCTCAAACAAGCTCAAGCACTCCCAAAGAAAGGGA TTGGAAAGTTCAAGTGTACAGGTCAATTGACCATGTATCTGTTGGCAAGTTGCTTGGGCAGTTAACTGTGGAGAGGAGCA TCCATGAAGCTTATGTTGAGGCAATTAGGCATGCTGAGAGGTTTATATACATTGAGAACCAATATTTCATTGGGGGGTGC CATTTGTGGGAGAAAGATAGGGATTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCACTGAAGGTGGTTAGCAAGAT CAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTCATGCCTATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCTGTTCAAG ATATACTTCATTGGACAAGAGAAACAATGACAATGATGTATAGGTTGATTGGAGAAGCAATACAAGGGAGTGGGGAACCA GGACACCCATCAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAGCAGAAGGGGAAAGGGGAGTATCTTCCACCAGA TTCTCCTCAACCTGGAACACAATACTGGAATGCTCAGAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGA TAGTGGACGACCTATACATGCTAATAGGATCAGCTAATGTGAACCAAAGATCCATGGATGGGGAAAGGGACACTGAGATA GCCATAGGATGCTACCAGTCTCAAGATGGAGCTGCTAACCAAATGAACCTAGGTGATATTCATGCATTCAGAATGTCACT ATGGTATGAGCACACCAATAGTGCTGAGGAATTGTTCTTGGAGCCAGAAACATTGGAATGTGTGCAGAGGATGAAATCAA TAGGAGATCAAATGTGGGAAATCTACAGCAGTGAAGAGGTTGTGGACATGGAGGGTGTGCACCTTGTTACTTACCCTGTG AGGGTTACACAAGAAGGGCATGTGAAGGACCTTGCCGATGGAGTTCACTTTCCTGACACAAATTGTCTAGTGAAGGGGAA GAGATCCAAAATGTTGCCCCATAACTTTACCACTTAG
Protein sequence (LotjaGi3g1v0426100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEETPKLLHGTIEITIFNASPYSSFFPFNCIFKSGKPAYVTIKVDNKKVAKTSQESDRVWNQTFQIQCAHPPESTITIAL KTSCSTLGKFHIQAQQLLKEGSLINGLFPLLMENGEPNPKLKLKFVLWFKPAELEPSWAKVLSYGEFQGLRDAAFPQRSN CHVKLYHDAHHSPAFQPPSDLCGTPQKLWEDVYKAIEGAEFIVYIAGWSLNPKMVLVRDPHTEIPHARGVKLGELLKKKA EEGVAVRVMLWDDETSLPFIKNKGVMNTHDEDAFAYFNHTKVICRKCPRLHHKFPTLFAHHQKIITVDTKAPKSIGDREL TSFLGGLDLCDGRYDTEQHSLFHTLIKESHCYDFYQTDIGGASLNKGGPRVPWHDAHASVTGEAAWDVLTNFEQRWTKQC DPSLLVPASTLVNLMPQTSSSTPKERDWKVQVYRSIDHVSVGKLLGQLTVERSIHEAYVEAIRHAERFIYIENQYFIGGC HLWEKDRDCGCTNLIPIEIALKVVSKIKAKERFAVYIVMPMWPEGVPESEPVQDILHWTRETMTMMYRLIGEAIQGSGEP GHPSDYLNFFCLANREQKGKGEYLPPDSPQPGTQYWNAQKNRRFMVYVHSKFMIVDDLYMLIGSANVNQRSMDGERDTEI AIGCYQSQDGAANQMNLGDIHAFRMSLWYEHTNSAEELFLEPETLECVQRMKSIGDQMWEIYSSEEVVDMEGVHLVTYPV RVTQEGHVKDLADGVHFPDTNCLVKGKRSKMLPHNFTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 758 | 757 | 0.0 | ||
| PIRSF | 2 | 758 | 757 | 7.6E-270 | ||
| PANTHER | 2 | 758 | 757 | 0.0 | – | |
| SUPERFAMILY | 6 | 125 | 120 | 5.39E-8 | – | |
| Gene3D | 32 | 145 | 114 | 3.4E-5 | ||
| Pfam | 37 | 110 | 74 | 6.0E-7 | ||
| SUPERFAMILY | 143 | 407 | 265 | 5.02E-26 | – | |
| SMART | 296 | 333 | 38 | 1.1 | ||
| ProSiteProfiles | 296 | 333 | 38 | 9.572 | ||
| Pfam | 297 | 333 | 37 | 2.9E-5 | ||
| SUPERFAMILY | 424 | 688 | 265 | 2.16E-27 | – | |
| Gene3D | 447 | 656 | 210 | 9.0E-13 | – | |
| CDD | 448 | 648 | 201 | 6.22475E-123 | – | |
| SMART | 604 | 631 | 28 | 2.5E-6 | ||
| ProSiteProfiles | 604 | 631 | 28 | 14.312 | ||
| Pfam | 607 | 631 | 25 | 7.7E-6 | ||
| Pfam | 676 | 747 | 72 | 2.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi3g1v0426100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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