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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0429100 |
| Transcript ID | LotjaGi3g1v0429100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI58|CSPL2_LOTJA CASP-like protein 2; TrEMBL-Plants: tr|A0A151UBC7|A0A151UBC7_CAJCA CASP-like protein; Found in the gene: LotjaGi3g1v0429100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84035885..84037654) extracted from Lotus japonicus Gifu genome v1.2.
CTGATACTTGTTCACCTACAAGTGAAGAGAATCTAAGTAGGAGAAAAAATGAAGGTGAGTGCAGTTGAAACTGGAGAAAT TTCCCAAGTAGCAGCCCCAAGAAAAGGGATGATAAGAGGTCTCTCAATAATGGACTTTATTTTGAGAATTGTGGCAGCCA TTGGCACACTGGGAAGTGCATTGAGTACGGGAACAACAAGGGAAACACTTCCCTTTACCACACAGTTTGTAAAATTCAGA GCTGTATTTGATGACCTTCCGACATTCGTGTAAGTGCTCATTCCTTCTATACAGTTCTCCTTTATTATTTGCCTTAAGTG GTAAGAGCTAGGGACATAAGGGTTGGGTGGGGTGAAGGGTGATGGGTCCCGGGTTCGAACCCGGTGGAGAGATTAATTTA CTAACATTTCTAACAACTAACATTTGCCTACAAAAAAAAATCATTACCTTTTACTATTACATTTTGAAGAAAAGAGAAGT TGATAACTAATGAGGGTGTGAATATATGTAATTTCAGGTTTTTTGTGACCTCCAATTCTATTGTATGTGGATACCTTGTA CTTTCACTTGCCTTGTCATTCTTCCACATAATAAGGAGGAGTTCTGCAGCAAAAAGTAGGATTCTCCTAGTCTTTCTTGA CACGGTAATATTCTATTTTAATTTTCTAGTCATTGAAGCTAATTCCAAATTCAAGCTCCTATGTTCCAAAATGATGCGCA TTTCTCGATTCCATCAATTAATTCAAAAATCACTCATATAAGGTTATAAATCACATATCCATATGTATTTTTTAATAAAT ATAATTTCATTGGTTGATACAGAAAATGAGATACCATTTGAGGACATTGGATCCCAGTTTTGGGAAGGGTCCATTGAATG TTTTATCATCTCCTCTGTTATTCGTTTATTCTTCTCTGTTCTAAATTATTATGTGACTACTATATTTCTTCTGCTATTTG TTACTAAACTCTAAATTGGACTAAAAGCTAGGCTTGTGTAACATTGAAAACTCCTCACCTAGTTAGATATTGTTACAGCC AACAAAGTTTTCTAACAAAGGTTAGATCGAATTTGTGAAGGTTATGTTTGGTCTTCTCACAACTGGAGCAGCAGCAGCAG CAACAATTGTTTATGTGTCACATTATGGCAACGTAAATGCCAATTGGTTTCCTTTCTGCGGACAATACAACCACTTCTGT GAACGCATTTCAGGTTCACTGATTGGTTCTTTCATTGCAGTGGTTATCTTCATGATAATTATTCTCATGTCAGCAGTATC AATAAGCAAGCATTGAAAATTGAAATGGTGGAATTGGACTGGTCATGGTGTGCATTGCCCTTATTCTGATTGTGCTTATC TAGCCTTCCCTGCAGGCTTTGTTTTAAGCTTTCAATATAAACTAGTCCAAGTGGAGCGTAAAATCCCAGTGGCAGTGTAA TTAACATCTTGCACGTTGTTATATATACGAGTTTGCTAATTGCTATATCAAATGTACTTAAGTTGAATCTTTTTGCTCTT TTTAATTTATTGTTCAATGTTCACTTCCTGTTTAGGGTAACTCTACATTAAAAATGTTGTAGAGAGTGAGATGGGTTGCT CTGTAGCGTCACATGTCTGATTCTCTTGGGCATAAACTAGAGTAGTCAATAAAGGTCTTCATATAATAGTTTAGGATTGT CTAAAAAATCACTACCGACCGAAACTTGATTCACCTGATATAACAGTTACCCGGAAAACCAAATTTGAACAACCCGTAGC CACTAACCTT
CDS sequence (LotjaGi3g1v0429100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTGAGTGCAGTTGAAACTGGAGAAATTTCCCAAGTAGCAGCCCCAAGAAAAGGGATGATAAGAGGTCTCTCAAT AATGGACTTTATTTTGAGAATTGTGGCAGCCATTGGCACACTGGGAAGTGCATTGAGTACGGGAACAACAAGGGAAACAC TTCCCTTTACCACACAGTTTGTAAAATTCAGAGCTGTATTTGATGACCTTCCGACATTCGTGTTTTTTGTGACCTCCAAT TCTATTGTATGTGGATACCTTGTACTTTCACTTGCCTTGTCATTCTTCCACATAATAAGGAGGAGTTCTGCAGCAAAAAG TAGGATTCTCCTAGTCTTTCTTGACACGGTTATGTTTGGTCTTCTCACAACTGGAGCAGCAGCAGCAGCAACAATTGTTT ATGTGTCACATTATGGCAACGTAAATGCCAATTGGTTTCCTTTCTGCGGACAATACAACCACTTCTGTGAACGCATTTCA GGTTCACTGATTGGTTCTTTCATTGCAGTGGTTATCTTCATGATAATTATTCTCATGTCAGCAGTATCAATAAGCAAGCA TTGA
Protein sequence (LotjaGi3g1v0429100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVSAVETGEISQVAAPRKGMIRGLSIMDFILRIVAAIGTLGSALSTGTTRETLPFTTQFVKFRAVFDDLPTFVFFVTSN SIVCGYLVLSLALSFFHIIRRSSAAKSRILLVFLDTVMFGLLTTGAAAAATIVYVSHYGNVNANWFPFCGQYNHFCERIS GSLIGSFIAVVIFMIIILMSAVSISKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 11 | 187 | 177 | 2.3E-100 | – | |
| PANTHER | 11 | 187 | 177 | 2.3E-100 | – | |
| Pfam | 24 | 171 | 148 | 2.7E-42 | ||
| Phobius | 30 | 50 | 21 | - | – | |
| TIGRFAM | 30 | 183 | 154 | 3.7E-45 | ||
| TMHMM | 30 | 49 | 20 | - | – | |
| Phobius | 51 | 69 | 19 | - | – | |
| Phobius | 70 | 98 | 29 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 99 | 109 | 11 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 110 | 135 | 26 | - | – | |
| Phobius | 136 | 162 | 27 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 163 | 184 | 22 | - | – | |
| Phobius | 185 | 187 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0429100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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