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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0432400 |
| Transcript ID | LotjaGi3g1v0432400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat-containing protein 1; TAIR: AT5G19680.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q3T0W4|PP1R7_BOVIN Protein phosphatase 1 regulatory subunit 7; TrEMBL-Plants: tr|G7L846|G7L846_MEDTR Protein phosphatase 1 regulatory subunit 7; Found in the gene: LotjaGi3g1v0432400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84403222..84404896) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGAGAAAGAAGCAGTGGAAATCGCATCATCACCACCACCACCTGAAGCCGAAGACGATCCTTCATCGACGCTTCT GGATCTCACCAGCTACCAGCTTCACGACCTAGACTCGGTCGAGTTACCCCCAAACCTCACCGAGTTAGACCTCACCGCGA ATCGCTTAACCACCCTCGACCCTCGCATAGCGAACCTCTCCAATCTCAACAAACTCTCCCTCCGGCAGAATCTCTTCGCC GACGACGCAATCCACCCTCTCTCTTCCTGGACCACCCTCTCCTCGCTCCAGGTACAAACCTCCCTCACTCAACGTTCATC GCGTTCGATTCGCTGAAACCCTAAATCACCGTTTGTTTGTGTATCTGATTTTTCATTTTTGACGCAGGAGCTCGTGCTGC GGGATAATCAATTGAGGAACATTCCAGATGTTAGCATATTCAAGAAGCTTTTCGTTTTCGATGTTTCGTTCAACCAAATC ACTTCGCTGCACGGGTTGTCGAAGGTTTCCGATACGCTGAAGGAACTCTATGTATCGAAAAATGAAGTAGCTAAGATTGA GGAGATTGATCACTTCCATGAATTGCAGATTCTCGAGCTTGGTTCTAACAAATTACGGGTTAGTGAAATGAATGAATGTG GATGACACGGTTTGGTTTTGTAAGGTTTTTGATTTTTCGATTCGGTTTGTGATTCAGGTTATGGAGAATTTGGCTAGCCT GGTGAATTTGCAGGAGCTTTGGCTTGGACGGAATCGAATTAAAGCTGTGAACTTGTGTGGTCTGCAATGCATTAAGAAGC TTAGTTTGCAAAGCAATCGTCTCACTTCCATGACTGGACTTGAGGTGATTCTGTTGCCTACTATTTCATTATCTTCAATG TTGGTTTAGGAGAACATTCATTTTTAAATTTCAATCAAGTAAAGCTTTAGAGAAGTAATAGTCAATTTGAACATGTTGAT GAATTGCTGGATGGGGTGGGTTGCAACTTGCAAGTCTTCTTTTGATATTGATTTCATTTGTAGTTGCTAACTTTTTAGGG ATACAGGGTTGTATAGCTCTGGAAGAACTCTACTTGAGCCATAATGGTATCACAAAAATGGAAGGTCTGTCATCTTTAGT CAATCTCCGTGTTTTAGATGTGTCATCAAATAAGTTAACCTCTGTGGATGACATTCAGAATCTGACGCAGTATGTCTATT TCTCTGATTCCTCCCCTGCTGATAATATTTTCCGGTCTTGTGTTGCGAGTTCATTGCCTCGTTTGATCTACTGCAGGTTA GAAGATTTGTGGCTTAATGACAACCAAATAGACTCACTCGAAGGATTTGATGAGGCTGTCGCTGGTTCAACAGAGAAGCT TACCACCATCTATCTAGAAAATAACCCATGTGTACGGTTATTTTTATCCTTACAAAATTTACATTTTTTAATGAAATGAT TATATTACAAGATTGGGCTATATAATGGCCTTTTCAATACATTATGAGCTTCATTTACTATTTGGGTCGAGTAATTCATT AGTTTCAGCTATCATTTGATTTTGGATGAGCATATAGTCAGGATAGTCTTCCACTGAGTTTCATTAAGAGCATATTAGCC CCCATTTCCTCTAGCAAGTAGCAATGAGGTCATTGAAAAGCTTCATTCTTTTAATCATGATGCTTATTCACGTGA
CDS sequence (LotjaGi3g1v0432400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGAAAGAAGCAGTGGAAATCGCATCATCACCACCACCACCTGAAGCCGAAGACGATCCTTCATCGACGCTTCT GGATCTCACCAGCTACCAGCTTCACGACCTAGACTCGGTCGAGTTACCCCCAAACCTCACCGAGTTAGACCTCACCGCGA ATCGCTTAACCACCCTCGACCCTCGCATAGCGAACCTCTCCAATCTCAACAAACTCTCCCTCCGGCAGAATCTCTTCGCC GACGACGCAATCCACCCTCTCTCTTCCTGGACCACCCTCTCCTCGCTCCAGGAGCTCGTGCTGCGGGATAATCAATTGAG GAACATTCCAGATGTTAGCATATTCAAGAAGCTTTTCGTTTTCGATGTTTCGTTCAACCAAATCACTTCGCTGCACGGGT TGTCGAAGGTTTCCGATACGCTGAAGGAACTCTATGTATCGAAAAATGAAGTAGCTAAGATTGAGGAGATTGATCACTTC CATGAATTGCAGATTCTCGAGCTTGGTTCTAACAAATTACGGGTTATGGAGAATTTGGCTAGCCTGGTGAATTTGCAGGA GCTTTGGCTTGGACGGAATCGAATTAAAGCTGTGAACTTGTGTGGTCTGCAATGCATTAAGAAGCTTAGTTTGCAAAGCA ATCGTCTCACTTCCATGACTGGACTTGAGGGTTGTATAGCTCTGGAAGAACTCTACTTGAGCCATAATGGTATCACAAAA ATGGAAGGTCTGTCATCTTTAGTCAATCTCCGTGTTTTAGATGTGTCATCAAATAAGTTAACCTCTGTGGATGACATTCA GAATCTGACGCAGTTAGAAGATTTGTGGCTTAATGACAACCAAATAGACTCACTCGAAGGATTTGATGAGGCTGTCGCTG GTTCAACAGAGAAGCTTACCACCATCTATCTAGAAAATAACCCATGTCATATTAGCCCCCATTTCCTCTAG
Protein sequence (LotjaGi3g1v0432400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEKEAVEIASSPPPPEAEDDPSSTLLDLTSYQLHDLDSVELPPNLTELDLTANRLTTLDPRIANLSNLNKLSLRQNLFA DDAIHPLSSWTTLSSLQELVLRDNQLRNIPDVSIFKKLFVFDVSFNQITSLHGLSKVSDTLKELYVSKNEVAKIEEIDHF HELQILELGSNKLRVMENLASLVNLQELWLGRNRIKAVNLCGLQCIKKLSLQSNRLTSMTGLEGCIALEELYLSHNGITK MEGLSSLVNLRVLDVSSNKLTSVDDIQNLTQLEDLWLNDNQIDSLEGFDEAVAGSTEKLTTIYLENNPCHISPHFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Gene3D | 14 | 89 | 76 | 2.8E-8 | ||
| SUPERFAMILY | 18 | 309 | 292 | 3.74E-51 | – | |
| SMART | 43 | 63 | 21 | 28.0 | – | |
| SMART | 43 | 68 | 26 | 57.0 | – | |
| SMART | 44 | 66 | 23 | 22.0 | ||
| ProSiteProfiles | 45 | 67 | 23 | 7.057 | ||
| PRINTS | 46 | 59 | 14 | 1.9E-5 | – | |
| ProSiteProfiles | 68 | 91 | 24 | 5.024 | ||
| PANTHER | 71 | 182 | 112 | 3.2E-62 | – | |
| Gene3D | 90 | 197 | 108 | 3.2E-23 | ||
| SMART | 93 | 112 | 20 | 14.0 | – | |
| SMART | 93 | 114 | 22 | 100.0 | – | |
| SMART | 93 | 117 | 25 | 0.18 | ||
| ProSiteProfiles | 95 | 116 | 22 | 7.681 | ||
| SMART | 115 | 136 | 22 | 3.9 | – | |
| ProSiteProfiles | 117 | 138 | 22 | 6.796 | ||
| SMART | 138 | 159 | 22 | 0.66 | – | |
| ProSiteProfiles | 140 | 161 | 22 | 6.403 | ||
| PANTHER | 159 | 217 | 59 | 3.2E-62 | – | |
| SMART | 160 | 181 | 22 | 0.055 | – | |
| ProSiteProfiles | 162 | 183 | 22 | 7.412 | ||
| PANTHER | 179 | 241 | 63 | 3.2E-62 | – | |
| SMART | 182 | 205 | 24 | 6.8 | ||
| SMART | 182 | 202 | 21 | 28.0 | – | |
| ProSiteProfiles | 184 | 204 | 21 | 6.657 | ||
| Gene3D | 198 | 314 | 117 | 5.2E-28 | ||
| SMART | 203 | 224 | 22 | 1.5 | – | |
| ProSiteProfiles | 205 | 226 | 22 | 6.68 | ||
| Pfam | 206 | 245 | 40 | 2.8E-6 | ||
| PANTHER | 207 | 309 | 103 | 3.2E-62 | – | |
| SMART | 225 | 246 | 22 | 0.17 | – | |
| ProSiteProfiles | 227 | 248 | 22 | 9.144 | ||
| SMART | 247 | 266 | 20 | 100.0 | – | |
| SMART | 247 | 268 | 22 | 0.12 | – | |
| SMART | 247 | 268 | 22 | 12.0 | ||
| PRINTS | 247 | 260 | 14 | 1.9E-5 | – | |
| ProSiteProfiles | 249 | 270 | 22 | 9.029 | ||
| Pfam | 249 | 288 | 40 | 3.5E-9 | ||
| SMART | 269 | 294 | 26 | 8.0 | ||
| SMART | 269 | 290 | 22 | 0.0011 | – | |
| ProSiteProfiles | 271 | 292 | 22 | 7.912 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0432400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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