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LotjaGi3g1v0432800.2

Overview

Field Value
Gene ID LotjaGi3g1v0432800
Transcript ID LotjaGi3g1v0432800.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|I1JKL2|I1JKL2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0432800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:84444707..84449725) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTCTCCCGAGAGTTATTATTATTGTTAATTGCTGTAACAGTAGTATTTATTTTCATCTTTCCATTTTCTCTCATTTT CAACTTTCAAATTTCAAGCAGCTTTGGAAAATCCCATCAGCCAACGGAAAATTTTCATTGTAAGTTGCTTTGAATTTCTT GACCATTTTTCTTATTTTGTGCTATTTTTTTCCTTTTTCATATATTTTTTTTTAATTTTCATCTTCTTGGGGTGAGTGAG CTAGTTGAGTTCTGGTTGAGCTGAATAAGAAACCTGAATACAGGTTTTCAGATTTAGAAGAAGCTTGCTTAAGTGTGGAA ATCACACTGACAGGTCATGATCTTTGCATTCTGAATATAAGAGCTTTGTTTTAAATTTTTCATTCTATTATTTCTGGAAT ATATTATTAATTTTTTTCCCTGTTTTCAGCTTTCTGTCTTTTAAAGTTTAGGAAAATGCTGGAGATGAAGCAGGTTTATG CTGTAGGGTGCAGCATATTTTTATGTTTCTGAAAAGCCTTTTGGTGTTTTTAGAAGCCTTCTGCAAATGATTGATATTTT TTTAACCTATTTTTCATAATTTTTTTATAAAATTGTACTATTTACTAATTTTTTTGTTATTTTTCAATAATGGTTGATAA ATATTTTTTCATCTCATGTTATGTGGTAAATTTCTGGTTTTCCTGTATTTGAAGTTAAACAAAGACAAATTTTTTTAACT TTGATGGAAAATCACTGCATTTCTTTGTTGTGAATCTCCAATCTGAACCAAAGTCTGCATCTTTTCTTTCTCTTCTGTAA GATCCTTTGATGGGTTTTCACTGTGCCTTACAAACATGCTCAACAAGGTTTGAGGGCACTAATGTTTTTGCTAAAAAGCT ATGATTTTTGTAATTACATGTGAAAAATGCAAAAACCCATTTGATTTCTGATTGTTCTGTATTCTTTTCTGGGGTTGTAG GTTCTGGTTTGGTCAAATTGGCTTGAGAGTGGTAATTCAATATATGCATGGAAGCAAGAGAAGGTATCAGTTCTGGGGTT ACAGTGATAGGAGCAGAAGCTCCATCAGCTTATCATGTGGCACCGAGGAGTGAAGCTCCGAACCAAGTTCATGTCCCTGC ACCAGCATCAGCAGGTACTGCTGCAGCTATTGTTGGCTCACCGGTGAGTGTAGGGTTGGATGTTACAATTAAGAAGAAAC GGGGTAGACCAAGGAAATATGGACCAGATGGGCCTGTCTCCATGGCATTGTCACCATTGCCAATCTCATCTTCAGTTCCG CCTTCTAATGACTATTCATCTGGGAAACGAGGGAAGCCACGCGGGATGGAATACAAGCAGTCGAAAAAAATTGGGTTGGA TCATCATCTAGGTATTTGTTTTTTCTAATGCTTATGTTTGTCATTATTTTGGTGCTGTTTTTCTTTTGATGAAGTTAATT GGCACCGCTTAATTTCTGAATTATGACCCACTTCTGAGTTCTAATTGGTTGGGAAATGTCATCAAATCTAACTGCATTTT ATATGATTGTGAACTTCTGTCATTGCGCAGATAATTCATATGGCATATGTCAAGGGGAAAATGTTTGACTGCTTTTATAG ATATTACTGCTTATTAAGTTTGAAACAGTTCAGTAATATGTATTCTTTTGCTGGTATTTCTGTAGGTGACTTGAATGCAT GCTCTGATGGTACAAGCTTTATGCCGCATATCATCACTGTCAATGCTGGTGAGGTATGCTTTACAGGGGGGCAGGACAAG GGTTCTAGCTTATACCACTGCTAGACGAATTTATCTCTTACTATACTTACCCTTACAAAAATAGTGTAAAGCTTCATAAA ATCCTTTGCAGTGTTATAATAAAATCACTTGTTGGCTAAGCTTCAGTTTTCTCTCTTTTAAACAATATCTGTTTTTTATG GTGTTATAATTTATAAACTTGTTCTCGATCACCATTTTTAGTTCTCATTTATTGCCATGGAAAAATATATTTAAACTGTC CTATCAAAAAAAAAAATGCTCACTTAAATAGTTACATGGTGTAGGGGCGCTGTGAAGATCCTGCGAATTTAGTTTTATTT CATAACAAATAGTTTTTTTTTGTTACATGAGGAAAAATACACAACAAATAGTTTAAATATAAGGGAAGAAGATCAATATT TTGTAGTTTTTTCCTATTTGACGAAGATAAACCTTTATTCTTACCTTCCCTAAGAGTTATGTTTTTTTTCTGCTAAGTCT TTCTAAGATATAGCTGTATAATGTTACTCTTTTGTTGTTGCAGGACATCACAATGAAGGTCATATCCTTTTCTCAACAAG GGCCCCGAGCTATATGCATCTTATCTGCTAATGGTGTGATTTCAAATGTCACACTTCGTCAGCCTGATTCTTCTGGGGGT ACTTTGACCTATGAGGTACGGCAGTAAATCATGCCATTGACTGATGTTTTATTTTATCTTTCCAAGCTTTCCTTTTCCAT GAAGACATTTTAATGCAATTTTTGTTAAACAAATAGAAATTCTCAAATTGTTAAAAGCCTACATTCATTCGAAACGTCTT TCTGATAAAAAACACCTTGTTCTGTTTTATTTTGCTCTACTTCATAAACTTAGCAACTTTGGTAAAAACCACTCTGAAGG GAACTTTGGCTATTGCCTATTCCCTATAAATGGTTTCGATTTGGAACCGTCATTGTTGATTTGATTGACTATTTTCTTTT GGGCCAGAAAGCCTGTAACCCTTTTTCTTTTTTAGTTCTTGACCTTGATGTGTATCCTGCCCAAGTTATGTTGCATCTGT TTGATATTGTATGCCTATGCACCATGCATGCCAATATGGTTATTATAAATTAATAACTTCCTTGAACTAGTAGTATGAGC ATATTGGGATTGCTTATTTTTATAATTATTGTATAGCTAATATTTGTAATCAGGGTAGAAAACTTGAAATATTAATAATG ATGTCCTGAGTTTATGTAGGTGAAGTTTTGTACTCATAGTAAAATTAATCGAGATGGTGAGAAAGTTGAATTTGATCTTA TGGTACAATTATACTAACATGTATTATGCAGTCAGTTTTTAGTCACTGCTCATTATGTTATCTGGTGTCAATAGTAGATC ATGGCAAGATCTTGATATTGATTATTCATGTCGTAAACCAACTATCCCAAAAGCTTAGCTGTTGGGAAAAGGCATTTGAA TGGGTTTATAATATATTATATTTCTAATGCGCCCCCTCACACAAGAGCCCATTGGGCTTGAAGCGTGAACAAGCACAAAC CCTACCTTGTACTGAATTCAATTTTTTATTAGAACAATTGTGGTACCAAGAATTGAATTCTAGACCACTTGGTCATAGAG ATTCTAATACCATGTCGTGAACCTTTTGCAAAAGCTTAAGCTCTTAGGGGAAAACACATGAAGGATTTTATATTATACTT CTAATAATTCACATGAGATAATTATAATGCGAACATATGGGGAAGCTTAAGCTCTTTGCACAATTAATGTATATGTTGCT CACGATGACAAGTAGTAGATGTACAGGTTTTTACATTTGGAAAGGGGTTTCCCTTGTAAAAGAAGGATTTCCTTCTTTGT GTCTTTTTTATTATAAATAATATTAGTTTCTCATTAAAAAAAGTACTCTTTTATCCTTATTCCTCTACTGTTTGGCTGTT AGGATTTTACCGATCCTACAATATACTATTAGAAATAGCTGCATCAGAGCAAGGAATTTTAGAAGCTTGACCAAAAATGA GTAATCTTGATGGAGTCTAGCAGAGTATACACGAAATTTATAAATGATAAAAAAGGGGCTTCTTGGATGTGAAAATAATT AAGAGGACTTGTATTCAAAAATGTTTTTTTTTTGTTAACTTGAATTTGATGGTTGATGCGGTCATGATGTGCTAATCTCT TGTTTCATTTTTTTCTAAAAACTCTTTCCTTGCAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACT GAGAACCAAGGAACTAGAAGCAGGTCAGGTGGAATGAGCGTCTCGCTGGCAAGCCCTGATGGCCGCGTTGTAGGTGGTGG AGTTGCTGGTCTTCTTGTAGCTGCCAGTCCCGTTCAGGTAAGCACCCTCCTACTCTTGACTTGCTCTCAACAGTGCACAA GCTCTTATGAAATTTTCTCTTTGAACTTTTGAAGAAACTAAGAAAGAACCACATAATTTCCCTGTGTATATTGCCAAACA AAAAAGGTTTGAGAATAGAAACAAGAGGCTAGCTTGCATACCTTAACAAGCGCACTGTAGTATTGCTCTGGTGTTGATTC TGATACAACAACTATTCCTCAGAAGAACGATCACTTGGATATCTAATCCATGTTCTCTTTTATATCAGGTGGTGGTGGGA AGTTTTCTACCAAACAGCCAGCAAGATCAGAAACCAAAGAAGCCCAAGTCTGATTATACATCTGTTACTGTTACACCAGT GATGGCAGTTTCTTCTGCTCCACCCGCAACTAGTGCTGAAAAAGAGGATGTACATGTTATGGGTGGTGGACATGTACTGC CAAATTCCGGAACCCTTAACTCAAGCCTCGCTCCTCCTCCCAACAACGCCTTCCGAAGAGACAACTGGGTCAACATGCAC TCCATGCCAGACTCAAGAAAGACAGCTACTGATATTAACATATCTTTGCCTGATAGTTAAGTTGATCATCAATCTGCATT CGTCTTGCTGACAACATTTACCTCTGAGTTGTTTATTTTTTATGTTTGCAGTGTTCTCTATTATCCATGATTGTTCCAAA ACCTGGTTCTGATGTCTATCACTGTAGAATGTAGTGTTTTAAGTTGCGGCTAGGTAGAGTATCTGATTTATTATCAGCTG ATTAGGTAGATGCAGCACTCTGCAGTATTATGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGGCTAATTCTGATGTAATGATGTACCTTGTTTGCCTGTTTATTTATGACTGAATTTGT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0432800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCAAGAGAAGGTATCAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCTTATCATGTGGCACCGAG GAGTGAAGCTCCGAACCAAGTTCATGTCCCTGCACCAGCATCAGCAGGTACTGCTGCAGCTATTGTTGGCTCACCGGTGA GTGTAGGGTTGGATGTTACAATTAAGAAGAAACGGGGTAGACCAAGGAAATATGGACCAGATGGGCCTGTCTCCATGGCA TTGTCACCATTGCCAATCTCATCTTCAGTTCCGCCTTCTAATGACTATTCATCTGGGAAACGAGGGAAGCCACGCGGGAT GGAATACAAGCAGTCGAAAAAAATTGGGTTGGATCATCATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAGCTTTA TGCCGCATATCATCACTGTCAATGCTGGTGAGGACATCACAATGAAGGTCATATCCTTTTCTCAACAAGGGCCCCGAGCT ATATGCATCTTATCTGCTAATGGTGTGATTTCAAATGTCACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTGACCTA TGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAGAACCAAGGAACTAGAAGCAGGTCAGGTG GAATGAGCGTCTCGCTGGCAAGCCCTGATGGCCGCGTTGTAGGTGGTGGAGTTGCTGGTCTTCTTGTAGCTGCCAGTCCC GTTCAGGTGGTGGTGGGAAGTTTTCTACCAAACAGCCAGCAAGATCAGAAACCAAAGAAGCCCAAGTCTGATTATACATC TGTTACTGTTACACCAGTGATGGCAGTTTCTTCTGCTCCACCCGCAACTAGTGCTGAAAAAGAGGATGTACATGTTATGG GTGGTGGACATGTACTGCCAAATTCCGGAACCCTTAACTCAAGCCTCGCTCCTCCTCCCAACAACGCCTTCCGAAGAGAC AACTGGGTCAACATGCACTCCATGCCAGACTCAAGAAAGACAGCTACTGATATTAACATATCTTTGCCTGATAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0432800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPAPASAGTAAAIVGSPVSVGLDVTIKKKRGRPRKYGPDGPVSMA LSPLPISSSVPPSNDYSSGKRGKPRGMEYKQSKKIGLDHHLGDLNACSDGTSFMPHIITVNAGEDITMKVISFSQQGPRA ICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASP VQVVVGSFLPNSQQDQKPKKPKSDYTSVTVTPVMAVSSAPPATSAEKEDVHVMGGGHVLPNSGTLNSSLAPPPNNAFRRD NWVNMHSMPDSRKTATDINISLPDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31500:SF44
1 333 333 6.0E-124 –
PANTHER
PTHR31500
1 333 333 6.0E-124
IPR039605
MobiDBLite
mobidb-lite
64 106 43 - –
MobiDBLite
mobidb-lite
82 96 15 - –
ProSiteProfiles
PS51742
130 271 142 41.686
IPR005175
SUPERFAMILY
SSF117856
132 252 121 7.85E-32 –
Gene3D
G3DSA:3.30.1330.80
134 276 143 2.3E-10 –
Pfam
PF03479
135 248 114 1.6E-28
IPR005175
CDD
cd11378
135 225 91 6.4631E-26
IPR005175

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003680
Molecular function AT DNA binding Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0432800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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