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LotjaGi3g1v0432800.4

Overview

Field Value
Gene ID LotjaGi3g1v0432800
Transcript ID LotjaGi3g1v0432800.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description RNA 2'-phosphotransferase; TAIR: AT2G45330.2 RNA 2'-phosphotransferase, Tpt1 / KptA family; Swiss-Prot: sp|Q5EAR5|TRPT1_DANRE tRNA 2'-phosphotransferase 1; TrEMBL-Plants: tr|I3SLL1|I3SLL1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0432800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:84450651..84456391) extracted from Lotus japonicus Gifu genome v1.2.

AATTAACCCAACAGCATCATCACATCACCACCCCACACCTTTTCCAGATACGGTGGTAAGAATACAGCAAAAGAGAATTG CAGCAGTGAAATAACTAAGAAAAGAGTGTTATTCAAAGGTAAAAACCAAATGCCCCAATAGCTATAGCTAACCCTATATT ATTATTATATAAAATTCAAAGGTAAGGTAACATATTCATCTCCCAAACATCATCTTTTTCATCTTAATTTCTTTTCCAAA TAAAATTCTAACCCAAAACACAGAAATTTATATCTGATTCAAATACCCAAATCTTCATCTAACCCAAAATCCAAACTTTT CCCTGTGCATCTGCAGCAACCTCATCAGGAGCCGACCCCAAAAGGTCAAGGCCTTCCTCGCCGTCTTTCCGGCATGGCCG CTCTCGTCCTTCTTCGCTTCATCGTTTTCGTCGCTGTTGAGCCAAATTTTCCCAAATCAATCTTTATCAAAATTTTCATT GTTTTTCGCCGATTTGGAACTCAAATTGCAATTTTTTGCGTGTTTTATGTCAATACTTTTTGGGATTTTGTTTGGAAAAG AGATTAAGGTGAAAAAAATGATGTTTGGGAGATGAATAAATTTTTTTTTTTGTGGGTAAGATGATGAAGATCTTGAGTTT CTTTTTTTATATGTATTTTTTATTTTTATGATTTCAGAGTTTTTTTATTTTTATTTTCTGTAGGGACTAAATTGACTAAG GTGGCATAAGAAGATCTGAGTCATTGATCATGTGGCAAGCCAACGTGGCAAAAATGATAACACATGAATTTTTCCGTCAC AGAGCATCAACTTGACCGACGGTAACACATTCAGGGATAAAAAACGACTCCAGTCCGTCACAAGTGAACACAATCAAGGA CCAAAATGGCTATTTACTCATACAAATTCCTTCCCTATTCTACGCTACGTCGTTTTAAGTTTCACTCTCTCTCATTCACT TCATCATCTTCTCTTGTCTTACATTTCAAATTTTCAATTCCATGTTTGCTTCGGTGACCAACACCGCCATCACTGTCTTA CGCCGCTGCACTCTCCGCCTTCCACTTCTCTCTCCTTCCTTCTCATCTTCCACACTCAGGTCCTTTGCTTCACCTTCAAT GGACAACAACAACAACGCCAATACATCCTACTCTCGCGCCACACCCAGGTATTCTTCTCTCTTCTCCATTCTTCAAGCAT GTTATATTTTACTAAATCGTGTTGTTGGTGTGGCTTTTTTTCGTGTTTTGATTGCAAAGTTAGCTTCTTTTTCTGAAATT ATGATCACGTGTTAAAAGGGTGTGTGTGGTTTGAAAATTTGTGAATTTTCGAGGGTTTGATTAGTCAAAGGGTTTGATAT GATGGGCAATTGGGCATGGTACTATGTGCTGCTTTCAATAAGCTCAGTGGAATTAGAAGATATATGAAGGTCTATATATG CATAAACAAGACCATCAAATTAGGTGGTGAAGCTTTGGGTGTCACTGTGAGCGAGTGATGAACATTGGTTACTAACAGCT GATGCTGAGTTTGAGAAAAATCTGACATTCAAATTGAAGAATTCAGTTCAACTAAATCAGGATTTTTTTTTACTCTTTTA CGAATTTGCAACACTATCTAGTGTATAGTTTGCAGGACCTGATGAATCAACTTTGAACCTTGAGTAAGGCTTGTCATAGT TTTGAAACAAAGCATTGACCTTGTTTTCTTTACCTTCTTTCGTGACCATGCTCATGAAAGCATTCAATTTTCAAGTGAAG TTATTGATATGGTACTGCATCACGTTGAGCATTTTTTGAGCCTAGACTACCTAATTGTTGGTGTTTCGTATGAAGCCGTG GCTGGCTTCAATTTGTGTACTAATGAGAGAGAGTCTTTCTACCTTCAAAATCATGTTACTGTTTTCAGTACAAGATATGT GTCATGTAAAAGTATGTAACTTAATTTGGTTTTCTTATTATTATTATTTGAGCATGTATCTATGTGTCATGTAAAAGTGT GTAATTATCTATATATTCATAATAGTGGCCATCTCACTATGTATACTACCCTGCTATGATTGTTTTGGTTACGCACTGCA ATCTGGGATTGATAACTATTACTTTACATTTAGTCACTTATCACTTCATTCAGTAGCTACCATTACAGAATCAAGCAGAA AGTTTATGTTTTTAATATTTTGTGGGCAGTGCTAGTAGTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAAAG AACAAGAGGGCGAGGTGGGGAAGGTGGCTCAGGAAAGGACAAAATTGACGCCCTTGGTAGGCTCCTGTAAGCACTACTAG ACCCTCTAATAATTTTTTTTAATAAACATTTCCTTTTATTTTTCTTGACTCGGCTGTAAAATGTGAGTTTCGTTTGTCGT TATTTTGTTTGTATAACAAAATGATATTCTTAGTCCCTTTATGTATAAAAACAACTATGTTATGCTTTGATCCAGGAAGA AAACCATGTGAGTTAAATTTTGTAATTTAAGCCTACCAAATAAGGTTTTTATGAAAATTTATGTACTTTATTTGCTGGTA ATGGAGTGACAGAATGAATGAACTTGATATCAATTGATTAAACTGTTTTTGCGTTTGATTCTTGCACTAACAAATTCAAT TAATCTATATTTTTGTCTAATATCTGCAGTACTCGAATTTTACGTCATATGGCATCCGAATTGAATTTGAATTTGCGGAG TGATGGCTACGTGAACGTTAATGATCTACTTAAGCTGAATCTTAAGACACTTGCCAATATTCCCCTGAGATCCCACACTA TTGATGATATTAGGGAGGTCAGTTGATGTACTTAGCTGCATGATTTGAGTTTTGTTCCTTTTTTTAAGAGGACCAATAGC CTGTACAGAAAAATATGAGGAATACATAATATTTGCTCAGAAAAATATACTTTTAACATTGATCATTAATGTAAACAGTT TTATTGTAATGTTAATTTCACTTTCCTATGAATTAACTGAAGAAAACTTTTTATTCTAAATGACCTCATGGTTAACATCA GGCTGTCCGGAAGGATAATAAGCAGCGCTTCAGTCTGATAGAAGAGAATGGAGAACTACTAATTCGTGCAAACCAAGGCC ACACAATTACGGTAAAATATCTCTTTTTCATCAAATGTTGACACATTCAATTGCCTTTTGAAGTTTTGGAGAAATATTTG AACTTAAAGTGTTTGGGACTATACTCTGTAACCCATGGAAATGGTAATGCACCTAGCACTCTATTGAAATTTGCTTTTAG CCATTGTTGTGATCAGATGTCATTAATGAAATCTCTAATACTTGGTGTTTTTCTTTATTCTCTCTTCCCTTGTGCATCTT TGTACAGTGATATTAACATGAAGTCATATATATCTGATAATCTGAAGTTCTAAATCACTGCATAAGTTTTTGTTTTCTGT ATAAGAATTGCTAATATGGCTTCAAGATATATTCATAAGTTAAATGTTACGCTATCAAATCTGTGCTGTCATGAAATGTA TTGATCCAAGTCCAAGCCTCCAAGGCACTTGAAATATGATATTTTTAGTACAGAAAATAACTTATATTTGTCATGCAAGT ATCATGGTCTGTTAAGGTCGATGGAGGTAGAAAGTCAATGGGGTTTGATGTTTAAAAAAATCCAAACTCTTCCTGGAATT GGGATTGGAATAGCTCATATTCTTGCTTGAAAACAAATGCTGATAATAGGTGTCAATTATTTCTTCTATGAATGAGCTAA TTTTTTTGACCCTTCATGTATATTGCCCTTGGTGGAAAATATATTTAAAATTCTTCCAGTCAAGTGAATGGAAGTGTAAT ATTGTCTGTCTTTTTCTCTTAATCAGTTTTTTAACTATTGATGTTTTGTTTCCAATAATTAGTCCTATTGCATAGAATTT TAAGTTAATATTAGATTAATGGTCTCTCTTATGTTATGTGAAGCTTTTGGATTGTATTTTCATCCAATTTTCTTCATCTT CTCTGACAATATGATTATTGACTTTTGATCTGCAGGCTGTTGAAACTGAAAGCTTATTGAAACCAATACTTTCAGCAGAA GAAATTTCAGGTGAATAATTATTAGAATTGTGTTACTATAGAGTCTGTTCAAGGTGAACCCTATACGTAGCAACATATTA ACTGCTGAATTATATATAATGTGAGATTATCGTTTGAAAATATTTTAACATATGTCCTATTTACCATGAACTCAGATATG ATATTAACATAAATACTTCCGATTGCTGAAAAGCTGTATATCTTAGCAAGTCCTATTCTGCAAATATTTATATTTTGATG CTAATTTATTTGTTTCATTTGGTGATTATATGCAGTTTGTGTGCATGGAACCTACAGAAGGAACTTGGAATCAATTCTAG GCTCTGGTCTGAAGCGCATGAAGAGATTACATGTTCATTTCTCTTGCGGTTTACCAACAGATGGAGAAGTAATAAGTGGT AATGTGATATTTCTTGAAAAGAATCCTATTTAACCATGGAGAAATCTAAATCTGGATACTTTTGTTTCATTATGGTTAGG AAAGATAACTTTCCTTCTGAAATATTAAGGATGGTGGTTAGGTTTAAAATTCAGAATGAATGACAAAGAGATGGTGTCTA TTGGGATTGATATTCTAGCTTTCTACCAATTGTGGAATCCAAATGACAAATTTTAAATTTTCGTTACCATTTATCCTTTG CTTATGTGTATTTACCTGAGGGCAGGATAGTAGTAATGCTGAACATAAAAGAGATTTAAATGATAAATAGTCAGTCATCC AAAGTCTTATTTGTATCTTTTTAATCTTTGCAAATGTGTATTTACCTTAGGCCAAGGTATTTACCTAATTTCTTATTTAA TTCTGATTTTTTTCCACAGGAATGAGGCGCGATGTTAATGTTCTGATCTTTTTAGATGTTAGAAAAGCATTAGAGGGTAT GATGATCTTCAAACCATGTTCTGAATGTGAACAAGTTTATCTTGAGATTTTGAACATTTTTGTCATTTGCTTTAAGACAA CTGACTACTGCTTCTTCACTTTTTTTTTTTCTCTCATCCTATTTCAGAAGGTTTGAAGCTTTACATTTCTGACAACAAGG TGATCTTGACAGAAGGTTTTGATGGTGTTGTTCCACCCAAGTATTTCGAAAAGATTGAATCATGGCCTGGTAGACAGCCC ATTCCTTTTTAGAAGTTCTGGCATAATTCTAGTGACTTATGTAAGTATCACAGTAAGTGGAGGAACTCCTACTTTGTTAT GAAGACAATTGCTTAGCAAAAAGGAAGATATGTTAAAGGAGACAACCTTGCTCACTTGTGATCTTTTAAGAAAGGAGAAA TTGTTGTTTACATATTCATTTAAGTAATGCTTTCAAGAGTCAGAAAAGATGTGCATGTTTGCATACACCGTAGATTTTCA TGTTGGAATGGGAATTGATTATGGGTAGAAATGATTGTGGAAAATCTGAGCGTGAATCCGAACATGTCAATTAAGAGACC TTACATTATACTTTAGAGAGATAGAACAGAGAATATCCTTTTTTCCTTGATCAACATTTTGCTTACTCTTTCTGTCTTTC ATTGAAACTTTTTCTCGTTAGGATTTTTCCTTGTAAAGTCTTATAGTAGAATGTCCATAATGGACATCTCAATGAGTGTT AAAAATATTGGAGAAACCTCATGAAGTGAGCAAGTAAGAGAATATCCACCATGAGATCTTT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0432800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTGCTTCGGTGACCAACACCGCCATCACTGTCTTACGCCGCTGCACTCTCCGCCTTCCACTTCTCTCTCCTTCCTT CTCATCTTCCACACTCAGGTCCTTTGCTTCACCTTCAATGGACAACAACAACAACGCCAATACATCCTACTCTCGCGCCA CACCCAGTGCTAGTAGTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAAAGAACAAGAGGGCGAGGTGGGGAA GGTGGCTCAGGAAAGGACAAAATTGACGCCCTTGGTAGGCTCCTTACTCGAATTTTACGTCATATGGCATCCGAATTGAA TTTGAATTTGCGGAGTGATGGCTACGTGAACGTTAATGATCTACTTAAGCTGAATCTTAAGACACTTGCCAATATTCCCC TGAGATCCCACACTATTGATGATATTAGGGAGGCTGTCCGGAAGGATAATAAGCAGCGCTTCAGTCTGATAGAAGAGAAT GGAGAACTACTAATTCGTGCAAACCAAGGCCACACAATTACGGCTGTTGAAACTGAAAGCTTATTGAAACCAATACTTTC AGCAGAAGAAATTTCAGTTTGTGTGCATGGAACCTACAGAAGGAACTTGGAATCAATTCTAGGCTCTGGTCTGAAGCGCA TGAAGAGATTACATGTTCATTTCTCTTGCGGTTTACCAACAGATGGAGAAGTAATAAGTGGAATGAGGCGCGATGTTAAT GTTCTGATCTTTTTAGATGTTAGAAAAGCATTAGAGGAAGGTTTGAAGCTTTACATTTCTGACAACAAGGTGATCTTGAC AGAAGGTTTTGATGGTGTTGTTCCACCCAAGTATTTCGAAAAGATTGAATCATGGCCTGGTAGACAGCCCATTCCTTTTT AG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0432800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFASVTNTAITVLRRCTLRLPLLSPSFSSSTLRSFASPSMDNNNNANTSYSRATPSASSGRGKAFDMRNDRERTRGRGGE GGSGKDKIDALGRLLTRILRHMASELNLNLRSDGYVNVNDLLKLNLKTLANIPLRSHTIDDIREAVRKDNKQRFSLIEEN GELLIRANQGHTITAVETESLLKPILSAEEISVCVHGTYRRNLESILGSGLKRMKRLHVHFSCGLPTDGEVISGMRRDVN VLIFLDVRKALEEGLKLYISDNKVILTEGFDGVVPPKYFEKIESWPGRQPIPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 36 36 - –
MobiDBLite
mobidb-lite
33 86 54 - –
MobiDBLite
mobidb-lite
33 58 26 - –
PANTHER
PTHR12684
61 293 233 5.0E-112
IPR002745
MobiDBLite
mobidb-lite
64 86 23 - –
Gene3D
G3DSA:1.10.10.970
88 167 80 2.2E-10
IPR042080
Pfam
PF01885
89 269 181 1.7E-63
IPR002745
SUPERFAMILY
SSF56399
91 271 181 1.38E-46 –
Gene3D
G3DSA:3.20.170.30
193 288 96 1.2E-12
IPR042081

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006388
Biological process TRNA splicing, via endonucleolytic cleavage and ligation Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.
Subterm of
GO:0016772
Molecular function Transferase activity, transferring phosphorus-containing groups Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0432800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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