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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0432800 |
Transcript ID | LotjaGi3g1v0432800.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA 2'-phosphotransferase isoform 1; TAIR: AT2G45330.1 RNA 2'-phosphotransferase, Tpt1 / KptA family; Swiss-Prot: sp|O14045|TPT1_SCHPO Putative tRNA 2'-phosphotransferase; TrEMBL-Plants: tr|I3S0W1|I3S0W1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0432800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84455068..84455862) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGAGATTACATGTTCATTTCTCTTGCGGTTTACCAACAGATGGAGAAGTAATAAGTGGTAATGTGATATTTCTTGA AAAGAATCCTATTTAACCATGGAGAAATCTAAATCTGGATACTTTTGTTTCATTATGGTTAGGAAAGATAACTTTCCTTC TGAAATATTAAGGATGGTGGTTAGGTTTAAAATTCAGAATGAATGACAAAGAGATGGTGTCTATTGGGATTGATATTCTA GCTTTCTACCAATTGTGGAATCCAAATGACAAATTTTAAATTTTCGTTACCATTTATCCTTTGCTTATGTGTATTTACCT GAGGGCAGGATAGTAGTAATGCTGAACATAAAAGAGATTTAAATGATAAATAGTCAGTCATCCAAAGTCTTATTTGTATC TTTTTAATCTTTGCAAATGTGTATTTACCTTAGGCCAAGGTATTTACCTAATTTCTTATTTAATTCTGATTTTTTTCCAC AGGAATGAGGCGCGATGTTAATGTTCTGATCTTTTTAGATGTTAGAAAAGCATTAGAGGGTATGATGATCTTCAAACCAT GTTCTGAATGTGAACAAGTTTATCTTGAGATTTTGAACATTTTTGTCATTTGCTTTAAGACAACTGACTACTGCTTCTTC ACTTTTTTTTTTTCTCTCATCCTATTTCAGAAGGTTTGAAGCTTTACATTTCTGACAACAAGGTGATCTTGACAGAAGGT TTTGATGGTGTTGTTCCACCCAAGTATTTCGAAAAGATTGAATCATGGCCTGGTAGACAGCCCATTCCTTTTTAG
CDS sequence (LotjaGi3g1v0432800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGATTACATGTTCATTTCTCTTGCGGTTTACCAACAGATGGAGAAGTAATAAGTGGAATGAGGCGCGATGTTAA TGTTCTGATCTTTTTAGATGTTAGAAAAGCATTAGAGGAAGGTTTGAAGCTTTACATTTCTGACAACAAGGTGATCTTGA CAGAAGGTTTTGATGGTGTTGTTCCACCCAAGTATTTCGAAAAGATTGAATCATGGCCTGGTAGACAGCCCATTCCTTTT TAG
Protein sequence (LotjaGi3g1v0432800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLDVRKALEEGLKLYISDNKVILTEGFDGVVPPKYFEKIESWPGRQPIPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 1 | 59 | 59 | 1.5E-13 | – | |
Pfam | 1 | 56 | 56 | 3.9E-20 | ||
PANTHER | 1 | 80 | 80 | 2.5E-38 | ||
Gene3D | 1 | 75 | 75 | 7.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | TRNA splicing, via endonucleolytic cleavage and ligation | Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. | ||
Molecular function | Transferase activity, transferring phosphorus-containing groups | Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi3g1v0432800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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