Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0435400 |
| Transcript ID | LotjaGi3g1v0435400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G22410.1 SLOW GROWTH 1; Swiss-Prot: sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial; TrEMBL-Plants: tr|A0A0R0LJ02|A0A0R0LJ02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0435400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84673857..84675896) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGATATCGATATAGATATAGATATAGATATAGCTACCCTTTGATCCCGACAGCCCCACCTTTTATCCCTTTTCTCTC GTTGTTACATACTCGGTCGTTAGCTCCCCTTGTCAAACCTATCAATTGGAACACCACCCACAGTTTTGTTTGGAAAAATC CGCTTCTTTCGATCTTGGAAAGATGTAAGTCATTGGTGCAGTTGAAGCAAATCCAGGCTCGGATGACCGTGACGGGCTTG GTTGATGATGGTTTTGCTGCGAGTCGGCTCGTTGCCTTTTGTGCTCTCTCTGAATCGCGGGCCCTTGAGTATTGCAGTAA AATCTTGTTTCATGCACGAGAACCCAATGTCTTTTCTTGGAACGTGACGGTAAGGGGATATGTGGAAAGTGGGAGCTTAG AAGGAGCTCTTTTGATGTACAGGAGAATGTTGCAGGGTGGTGTTTTGAAGCCAGATAATCATACTTACCCTTTACTGATT AAAGCTTGTTCTTGCCCATCTTTAAATTGGGTCGGTTTTACTATACTTGGGCATGTGTTGAAGTTTGGTTTTGAATCAGA TATATTTGTGCACAATGCTTCAATCACTATGCTACTCTCATACGGAGAGTTGGAGGCAGCATATGATGTGTTCAGTAAAA GTTGTGTGAGAGACCTTGTAACCTGGAATTCCATGATTACTGGGTGTGTTAGAAGAGGACTAGCAAATGAGGCTATAAAA CTCTATCGAGAAATGGAGGCAGAGAAAGTGAAGCCAAATGAGATTACAATGATTGGGGTCGTTTCTTCTTGTTCTCAGTT ACAGGATTTGAATCTTGGCAGAGAATTTCATCATTATATCAAGAGACAAGGGCTTGAGTTCACAATTCCACTCAATAATG CGCTTATGGATATGTATGTGAAGTGTGGGGACCTGTTAGCTGCACGAGTTTTATTTGATAACATGGCACAGAAGACCATT GTTTCATGGACTACAATGGTTTTGGGATATGCTAGATTAGGTTTTCTGGATATTGCTCGGGAGCTTTTATTTAAAATTCC AGAGAAAAGTGTTGTGCCTTGGAATGCAATGATCAGTGGCTGTGTCCAAGCTAAGCATAGTAAGGAGGCATTGGCTCTAT TCCATGAAATGCAAATTAGAAAAATAGAACCTGATAAAGTGACCTTGGTTAACTGTCTTTCTGCGTGCTCCCAACTAGGA GGACTTGATGTCGGAATATGGATTCACCATTATATTGGAAAACACAGTATTTCTCTAGATGTTGTTGTAGGAACTGCACT AGTTGATATGTATGCCAAGTGCGGAAATATTGCAAGGGCACTCCAGGTTTTCCAAGAGATTCCTCAAAGAAACTGTTTGA CCTGGACAGCCATCATTTGTGGTTTAGCACTTCATGGGAATGCTCATGACGCTATTTCCTATTTCTCGAAAATGATTCAT AACGGATTAATGCCTGATGAGATCACCTTTCTTGGTGTCTTACAAGCATGTTGTCATGGAGGTTTAGTTGCAGAAGGCCG TAAATATTTTTCTGAAATGAGCTCTAAATTCAATATATCTCCAAAGGTTAAACACTACTCATGCATGGTGGACCTTTTAG GAAGGGCTGGTCATTTGGAGGAAGCAGAACAGCTTATTAAAAGTATGCCCATGGCGGCTGATGCTGCTGTGTGGGGTGCT TTATTCTTTGCTTGTCGAGTACATGGCAATGTTCTAATTGGAGAGAGGACAGCTTTGAAGCTTCTTGAGATTGATCCTCA TGATAGTGGAATTTATGTTCTGCTTGCTAGCATGTACCGTGAGGCAAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAAA TAATGGAGGAGAGAGGAGTGGAAAAAACGCCTGGTTGCAGCTCAGTTGAGATCAATGGCATTGTTTATGAGTTTGTGGCG AGGGATGCATCACACCCTCTGTCTGAATGGATTTATGAATGCCTGGTTTCATTGACAAAACAACTGTAGCTTCTTGGATT TACAGTGGGCACTCCTACTTATTGATATAATCGTTTTTCA
CDS sequence (LotjaGi3g1v0435400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGTGACGGGCTTGGTTGATGATGGTTTTGCTGCGAGTCGGCTCGTTGCCTTTTGTGCTCTCTCTGAATCGCGGGC CCTTGAGTATTGCAGTAAAATCTTGTTTCATGCACGAGAACCCAATGTCTTTTCTTGGAACGTGACGGTAAGGGGATATG TGGAAAGTGGGAGCTTAGAAGGAGCTCTTTTGATGTACAGGAGAATGTTGCAGGGTGGTGTTTTGAAGCCAGATAATCAT ACTTACCCTTTACTGATTAAAGCTTGTTCTTGCCCATCTTTAAATTGGGTCGGTTTTACTATACTTGGGCATGTGTTGAA GTTTGGTTTTGAATCAGATATATTTGTGCACAATGCTTCAATCACTATGCTACTCTCATACGGAGAGTTGGAGGCAGCAT ATGATGTGTTCAGTAAAAGTTGTGTGAGAGACCTTGTAACCTGGAATTCCATGATTACTGGGTGTGTTAGAAGAGGACTA GCAAATGAGGCTATAAAACTCTATCGAGAAATGGAGGCAGAGAAAGTGAAGCCAAATGAGATTACAATGATTGGGGTCGT TTCTTCTTGTTCTCAGTTACAGGATTTGAATCTTGGCAGAGAATTTCATCATTATATCAAGAGACAAGGGCTTGAGTTCA CAATTCCACTCAATAATGCGCTTATGGATATGTATGTGAAGTGTGGGGACCTGTTAGCTGCACGAGTTTTATTTGATAAC ATGGCACAGAAGACCATTGTTTCATGGACTACAATGGTTTTGGGATATGCTAGATTAGGTTTTCTGGATATTGCTCGGGA GCTTTTATTTAAAATTCCAGAGAAAAGTGTTGTGCCTTGGAATGCAATGATCAGTGGCTGTGTCCAAGCTAAGCATAGTA AGGAGGCATTGGCTCTATTCCATGAAATGCAAATTAGAAAAATAGAACCTGATAAAGTGACCTTGGTTAACTGTCTTTCT GCGTGCTCCCAACTAGGAGGACTTGATGTCGGAATATGGATTCACCATTATATTGGAAAACACAGTATTTCTCTAGATGT TGTTGTAGGAACTGCACTAGTTGATATGTATGCCAAGTGCGGAAATATTGCAAGGGCACTCCAGGTTTTCCAAGAGATTC CTCAAAGAAACTGTTTGACCTGGACAGCCATCATTTGTGGTTTAGCACTTCATGGGAATGCTCATGACGCTATTTCCTAT TTCTCGAAAATGATTCATAACGGATTAATGCCTGATGAGATCACCTTTCTTGGTGTCTTACAAGCATGTTGTCATGGAGG TTTAGTTGCAGAAGGCCGTAAATATTTTTCTGAAATGAGCTCTAAATTCAATATATCTCCAAAGGTTAAACACTACTCAT GCATGGTGGACCTTTTAGGAAGGGCTGGTCATTTGGAGGAAGCAGAACAGCTTATTAAAAGTATGCCCATGGCGGCTGAT GCTGCTGTGTGGGGTGCTTTATTCTTTGCTTGTCGAGTACATGGCAATGTTCTAATTGGAGAGAGGACAGCTTTGAAGCT TCTTGAGATTGATCCTCATGATAGTGGAATTTATGTTCTGCTTGCTAGCATGTACCGTGAGGCAAAAATGTGGAAGGAGG CAAGGAGTGCAAGGAAAATAATGGAGGAGAGAGGAGTGGAAAAAACGCCTGGTTGCAGCTCAGTTGAGATCAATGGCATT GTTTATGAGTTTGTGGCGAGGGATGCATCACACCCTCTGTCTGAATGGATTTATGAATGCCTGGTTTCATTGACAAAACA ACTGTAG
Protein sequence (LotjaGi3g1v0435400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVTGLVDDGFAASRLVAFCALSESRALEYCSKILFHAREPNVFSWNVTVRGYVESGSLEGALLMYRRMLQGGVLKPDNH TYPLLIKACSCPSLNWVGFTILGHVLKFGFESDIFVHNASITMLLSYGELEAAYDVFSKSCVRDLVTWNSMITGCVRRGL ANEAIKLYREMEAEKVKPNEITMIGVVSSCSQLQDLNLGREFHHYIKRQGLEFTIPLNNALMDMYVKCGDLLAARVLFDN MAQKTIVSWTTMVLGYARLGFLDIARELLFKIPEKSVVPWNAMISGCVQAKHSKEALALFHEMQIRKIEPDKVTLVNCLS ACSQLGGLDVGIWIHHYIGKHSISLDVVVGTALVDMYAKCGNIARALQVFQEIPQRNCLTWTAIICGLALHGNAHDAISY FSKMIHNGLMPDEITFLGVLQACCHGGLVAEGRKYFSEMSSKFNISPKVKHYSCMVDLLGRAGHLEEAEQLIKSMPMAAD AAVWGALFFACRVHGNVLIGERTALKLLEIDPHDSGIYVLLASMYREAKMWKEARSARKIMEERGVEKTPGCSSVEINGI VYEFVARDASHPLSEWIYECLVSLTKQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 94 | 84 | 1.6E-10 | ||
| Pfam | 41 | 89 | 49 | 4.2E-8 | ||
| ProSiteProfiles | 42 | 76 | 35 | 10.161 | ||
| TIGRFAM | 45 | 75 | 31 | 0.0023 | ||
| Gene3D | 95 | 216 | 122 | 9.0E-21 | ||
| PANTHER | 110 | 205 | 96 | 5.2E-117 | – | |
| ProSiteProfiles | 113 | 143 | 31 | 5.382 | ||
| Pfam | 144 | 190 | 47 | 1.9E-11 | ||
| ProSiteProfiles | 144 | 178 | 35 | 13.208 | ||
| TIGRFAM | 146 | 180 | 35 | 1.2E-9 | ||
| ProSiteProfiles | 179 | 213 | 35 | 6.412 | ||
| PANTHER | 197 | 268 | 72 | 5.2E-117 | – | |
| ProSiteProfiles | 214 | 244 | 31 | 7.026 | ||
| Gene3D | 217 | 338 | 122 | 6.5E-23 | ||
| Pfam | 219 | 244 | 26 | 0.04 | ||
| ProSiteProfiles | 245 | 275 | 31 | 7.794 | ||
| PANTHER | 256 | 336 | 81 | 5.2E-117 | – | |
| Pfam | 275 | 322 | 48 | 1.0E-11 | ||
| ProSiteProfiles | 276 | 310 | 35 | 11.411 | ||
| TIGRFAM | 280 | 311 | 32 | 8.1E-9 | ||
| ProSiteProfiles | 311 | 345 | 35 | 5.404 | ||
| PANTHER | 331 | 541 | 211 | 5.2E-117 | – | |
| ProSiteProfiles | 346 | 376 | 31 | 8.287 | ||
| ProSiteProfiles | 377 | 411 | 35 | 10.15 | ||
| Pfam | 378 | 425 | 48 | 1.6E-8 | ||
| Gene3D | 380 | 563 | 184 | 1.6E-30 | ||
| TIGRFAM | 380 | 413 | 34 | 3.6E-6 | ||
| ProSiteProfiles | 412 | 442 | 31 | 8.133 | ||
| ProSiteProfiles | 448 | 478 | 31 | 7.892 | ||
| Pfam | 451 | 476 | 26 | 0.0014 | ||
| TIGRFAM | 452 | 475 | 24 | 5.4E-4 | ||
| ProSiteProfiles | 514 | 548 | 35 | 7.848 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0435400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…