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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0436900 |
| Transcript ID | LotjaGi3g1v0436900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G60730.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36; TrEMBL-Plants: tr|A0A072UTA3|A0A072UTA3_MEDTR Pectinesterase; Found in the gene: LotjaGi3g1v0436900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84820072..84825374) extracted from Lotus japonicus Gifu genome v1.2.
CACGTATACATGTTCACGCAATCCTAGAGACACATGGCTAGCATATGCTTCCTCAGCTGGCTATAAAATCAGCTACCCAC AACACCAAGCCATGCAAGTCACTACCATAGCTCTCTACCAAAAATGGCCACTTGTACCACCGCTTTATTGATCCTCCTCC TCATCCTTGCCACGGCTACCACCACCACCTTCAGCCTCCTAGAAATGGAGGTGCTCCAAATGGCTCAAACCCAGGTTTCA CAGGCCAAGAATTGGGTTAATGGGAACAACTCACAATATGGATTGGGAACCCTTTCAGATGAAACAAGGAGTAGTGTTAA TATTGTGGGTGGTGTGGCTCTAAGAGATTGTTCCAAGCTCTATGAGGAGAGCGAGTCTCGTCTCTCTCGCATGGTGTCAT CTGACAAGAGTAGTTACACCAAAGAAGACGCGCTTACATGGGTAAGTGCTGTGATGACAAACCACAGGACTTGTTTGGAT GGACTTCAGGAAAAAGGGCATGTTGAAGCTCATCAGTTATTGAGTAGAAAAAACTTGACCACGTTGCTTGGGCAAGCTCT TATTTTGTATTCTAAGACCAAAGTAAAAGGCAAAGGTAAGTAACTTGTAGTTGTAGTAGATATATAATGTGCATATTTAG ATATACCTTGAAATTTTATCAGAATCACGTGATATCAATTATATGATGATGGTTATATGATGATGGACACTCGCAAAAAT TAGAAATAGTGCTTCTGTTTTATTGTAATTTCGACTACACTTGATTTTTCAAGGTATATTCAAACATGTATAATGTTGAT GTTTTTCTTAATTTGCAATCTTAGCTCTTGCTCCCTGAAACCAATTTGGTTAACTAGTTTGGGAAATTTCATGTGTACAT GTGTATGTATCGGTATCTATATCAACTTTGACATTTACTGCTAAACTTCATCTGCATTCTGCAGTGCACTTAATGTTTGC ATAAATGAGACCAGGGCACTGGTACCCACGCAGTCCACCATTTTTATTAATAAAGGGGGAATCTAGACATTTCAAGACAT GAAACTAATAAGTACAAAGCACATTCGTGTGGGAGAGTTGGGATGATAATGTTGTGGAAATTAAAAATATGTATGGTTGA TAATGTGATGGGATAAATAAGAAAATATGAAATTAGAAAGGAAAATATTTTGGAATCCAAGTTTTTTGCTGCAACCAGTA AATTATCTTAAACTCTTTTCATTGATTTGGTCTATAATTATGTAAGGTAATCATGCAAGAAAGTGTAAAGAACTCCTGCA TATATAGGTGCAGATTTGAGAATTTTTCTCGTATGAATATAATCATACTCTTCAATGCAAGCTGCAGTGGAACAATAATC CACCACATGCATGTATAATATGTCTCTCTTTGTATATAGAGTCCTTAATTTAGAAGATTGTGTTGTCATTTTTTCCCTTT TGTTAATCACTAAAATGTTGATTTTAAAGTTCATTATTATCTTTATCATTTATTAGGCTAAATAATCACTAATTATTTTT CAATTATAAAAACTTGCAGCAATCAGAAAGGTACATGGAAAAGTTATTCTAATTTTAATAATCCTTTTACTTCAAAATTA AATTCCATGAGGCATGCATAATACACTATAGTGATACATCCATGATCCTGTGCCACGCTAATTAATCAGTTAAATTGTAC CCATGTTTCATGGTATTGGACGTGTCATATCTTATTTGTACTCTTGTAGTAGCTATAGCTAGATACTACTAGACAAACTC CACCTATATAAAGGAAAGCATAGCCACGACGACCTCCTTTTTTCTATCGGCAAAAGAATTTAGAAGAATGTCTTTACTAC GGAAGTTCAGAATATTGTCCTTTATTGCATGAAACAAACAAAAGAAATAAATAAATCTGACTGGGATGTGCATTATGCTC ATTATTGATCTCCCCTTTGTAGATACATGTACGAAAATGTAGACTTTCTATTATTTCAGTTACTAACCATTTGGTTCTTC CCTCAGTAAAAGCAGATTATTTTTTCATCAAAATTGTTTTGATACTTTTTTTATAAATATTTAATAATTAAAAGTTAATT TTATAATACTTTATCAAACTAAACAGGGTGAGAAAGTGGTTAATTACCTTCATCCTCAACACCCTTATTTTGGTTGGAAA ATTATTGGTGAAGAAACAACATAGAAATTAGGAGCGACGCCTTTCTAGGCATACATTAGCGTGGTTTTTGACCTTTGCAG ACTTTTGCGGCGGTTTGTGTGTAAAAAAATGTCGCTTTTAATTTGTCTGTCTACATAAAAAGAACTCATTTAATTTTGAT TTGTGTTACAGGACTGCATCACAAAACAGTATCCGAATCAAATGATGGTCTTGCTTTAGAATCATGGAGTCCAGCTGCCC ATAAGGCAGATTTCACGGTGGCACAGGACGGTTCAGGCAGCCACAGAACAATTAGAGAAGCGGTGGATGCATTGGCTGCA ATGGGGCACAACCGTGGTGGAAGAAGAGCAGTTATACATGTGAAAGCAGGAGTCTACCATGAGAAGGTGGTGATTGGAAG CAAAATGCACAATGTGATGTTTGTAGGAGATGGAATAGACAGAACTATCATCACTGGAAACAGAAATGTTGTTCAAGGTT CTACCACTATGAACTCTGCCACATTTGGTAAGACCCCAAATACCTTACCAAATAAGTATCATATTCAAAATTGAAAGTAC CTCTCTGTTTTTTCCTGTTTTCCTATGTCCTTTTAGTATACAAACGTATAACACATCCTAGAAAAAAAAGATAACTGCTC GATTCAGGACAGATTGATTTTACAGTGTTTTCCTAGTGTGTTCCAATCTGGGTTACTAAAATTGATTTTGCACATAATTG ATTCTACTAAAGTTGTGTAAATGTGATTTATGTTAGGATACTTTTATGAATATGTGTTTTTTGTAGGATAACTTATGAAA TTCAGTTGTGAAATCTCATGACTATGTTTAACACGGAAACAACTAATTGTTGTGGCAAGTGAATAATGTTCCTTTCACAT CTCTCTTTGAGGAGGAGAGATGTAGAATGAGGAGAGAGATAGAAAGAAAAGAAAAAGTAAGAGAAAGAAAATATGAGATG TAATAGATGATAAGAGAAGAAAGATTGAAATAAAAAGATGTGGAAATGAAGTGTTTAAAAAATGAGGTGTGCATATATCA TTATTAGTGGCAAGTAGAATTGATTCTTGAACCATGAAATCAATTTTATTGGTAGACTCAATCTTTATTTTACCACTTAA AATTGATTTTTACCTTGTAGAATTGATTCTTAAGCAAACATGCATGAAGAGTTTGGTTCTCCATGGGAGAACCTCATTAT AGTAGAGTAAAATAAAATCTTTGAGTGATAATAAAGATGTTTGAAAATCACTTTATATAAATGATTTCACTCCAAAAATC CATTTTCGTATAAGTTAGAGAAAGTAATTTTTGTGTTAAACACTGAGAGTGTATAATTTGATTTCACAACATTACATTAA TTTTTTTTTTAATCTAAACATACATGATTTCACTATCGACTTACTTTTATTATAACTAATTTTCTCCGAAATCAATTGTG ACAATAGTAATCTAAACAGGCACCAAGCTTAATTATAAAATATAAACTGAGAGAATTTTTCTACACAAGCTGTTCTGTTT TTCCAGAAGGGATAGAAAAATAGTACAAGAAAAAGTAAGACATGATTTCTAAATGTACCAATTGAAAAGTTTGCTAACTT GATTTTGTGTGTGTGTGTGTGTTTGTATGAAACAGATGTATCAGGGGATGGATTTTGGGCAAGAGACATAACGTTTGAGA ACACAGCAGGCCCAGAAAAGCACCAAGCAGTTGCACTCAAATCAAGCTCCGACTTCTCAGTTTTCTACAGGTGCAGCTTC AAAGCCTACCAGGACACTCTCTACGTGCACTCCAACCGCCAATTCTACCGCGACTGCCACATATACGGCACCATAGACTT CATCTTTGGGGACGCCGCAGCAGTCCTGCAAAACTGCGACATCTTCGTGAGGAAACCGATGAGTCAGCAATCCAACTTCA TCACCGCGCAAGGAAGAGACGATCCTAACAAACCAACTGGGATTTCGATACAGGGTTGCAGGGTCAGGCCCACCTCCGAA GGTGTTTCTTCCAAGACCTTCCTGGGAAGGCCTTGGAAGAAATACTCGAGGACAGTGTTTATGAAGAGTGATTTGGATGG GTTGATTCACCCCAGAGGGTGGGGTGAGTGGAGAGGAAATTTTGCACTCTCTACTCTGTACTATGGAGAGTATATGAACA TTGGAAGTGGTGCTTCTACACAGAATAGGGTGAATTGGCCTGGTTTTCATGTGCTGAGGAGTGCTGGTGAGGCAGCACCA TTTACTGTGAGTCGGTTTTTGCAAGGGGATCGTTGGATTCCAGCTTCAGGGGTGCCATTCTCGTCTGAAATTTAATAAGT GGGAAGGTATACTTAGTTGGTGTATGTAACTAGATGGTATTGATCCATTAATGTTATGTAAATCAGTGTGCTATCTTGAC TGTGTTAGCATGTTAGTTACTACTAATTAGCAGATAGCACTGTATTATTGCTAGCTTGGTGTCATCTGATGCTCCCAAAT CCCAATTTCCCACAGCTGTCACCAGGCTCAAGACTAATGTAAGGCTATACAATATTGTTATATGAAATAAAATCTATATT ATCATGATAATGGTATAATTAGTGTACTTTTGAAAACAAAATAGAAAGCAAAGGGAGGAGGGTATTCACTGTTGAAATGG GACATTTATTGGTGCCCCTATTTTACTTTAAATATCTGCCTTTAAGAGATTAACTGTTGAGCCTTTCTAGCTAGAGTAAA GAAAAAGTTAAGGGTTAGATATGGACTTGTAACAAGGTGTCATTTATGTTGGCAACTTCAATTGAAAAAAAAAGTTTTGA AAGTGCCATCAACCTAACCTTAACCTTGACAACTTTAAAATTAAAAAAAATAATTAAAATAAAGTGTCAAGCAACTTGAA CAATTAAAAAATGAAAGTGCTTCATGGTATGAGACAAAGTTCTTGGATTGGGTGAGATGAAGGGTCAAGAATCCAGGATT TGAACACTAAGGATGATTAATTTACTAACATTATTAACAACTAACATTTATGTATAAAAAAATGAGACGAAGTTCGTTTG TTTAGTTTTATCCTCTTTTTATTGACTATTGAAAGTTCTCCTGGGATGGTAGTCTGGCACGAGATGAAGTTCGTCGAAGT TTATTTGCTTAGTTTTATTCTCT
CDS sequence (LotjaGi3g1v0436900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTTGTACCACCGCTTTATTGATCCTCCTCCTCATCCTTGCCACGGCTACCACCACCACCTTCAGCCTCCTAGA AATGGAGGTGCTCCAAATGGCTCAAACCCAGGTTTCACAGGCCAAGAATTGGGTTAATGGGAACAACTCACAATATGGAT TGGGAACCCTTTCAGATGAAACAAGGAGTAGTGTTAATATTGTGGGTGGTGTGGCTCTAAGAGATTGTTCCAAGCTCTAT GAGGAGAGCGAGTCTCGTCTCTCTCGCATGGTGTCATCTGACAAGAGTAGTTACACCAAAGAAGACGCGCTTACATGGGT AAGTGCTGTGATGACAAACCACAGGACTTGTTTGGATGGACTTCAGGAAAAAGGGCATGTTGAAGCTCATCAGTTATTGA GTAGAAAAAACTTGACCACGTTGCTTGGGCAAGCTCTTATTTTGTATTCTAAGACCAAAGTAAAAGGCAAAGGACTGCAT CACAAAACAGTATCCGAATCAAATGATGGTCTTGCTTTAGAATCATGGAGTCCAGCTGCCCATAAGGCAGATTTCACGGT GGCACAGGACGGTTCAGGCAGCCACAGAACAATTAGAGAAGCGGTGGATGCATTGGCTGCAATGGGGCACAACCGTGGTG GAAGAAGAGCAGTTATACATGTGAAAGCAGGAGTCTACCATGAGAAGGTGGTGATTGGAAGCAAAATGCACAATGTGATG TTTGTAGGAGATGGAATAGACAGAACTATCATCACTGGAAACAGAAATGTTGTTCAAGGTTCTACCACTATGAACTCTGC CACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATAACGTTTGAGAACACAGCAGGCCCAGAAAAGCACCAAG CAGTTGCACTCAAATCAAGCTCCGACTTCTCAGTTTTCTACAGGTGCAGCTTCAAAGCCTACCAGGACACTCTCTACGTG CACTCCAACCGCCAATTCTACCGCGACTGCCACATATACGGCACCATAGACTTCATCTTTGGGGACGCCGCAGCAGTCCT GCAAAACTGCGACATCTTCGTGAGGAAACCGATGAGTCAGCAATCCAACTTCATCACCGCGCAAGGAAGAGACGATCCTA ACAAACCAACTGGGATTTCGATACAGGGTTGCAGGGTCAGGCCCACCTCCGAAGGTGTTTCTTCCAAGACCTTCCTGGGA AGGCCTTGGAAGAAATACTCGAGGACAGTGTTTATGAAGAGTGATTTGGATGGGTTGATTCACCCCAGAGGGTGGGGTGA GTGGAGAGGAAATTTTGCACTCTCTACTCTGTACTATGGAGAGTATATGAACATTGGAAGTGGTGCTTCTACACAGAATA GGGTGAATTGGCCTGGTTTTCATGTGCTGAGGAGTGCTGGTGAGGCAGCACCATTTACTGTGAGTCGGTTTTTGCAAGGG GATCGTTGGATTCCAGCTTCAGGGGTGCCATTCTCGTCTGAAATTTAA
Protein sequence (LotjaGi3g1v0436900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATCTTALLILLLILATATTTTFSLLEMEVLQMAQTQVSQAKNWVNGNNSQYGLGTLSDETRSSVNIVGGVALRDCSKLY EESESRLSRMVSSDKSSYTKEDALTWVSAVMTNHRTCLDGLQEKGHVEAHQLLSRKNLTTLLGQALILYSKTKVKGKGLH HKTVSESNDGLALESWSPAAHKADFTVAQDGSGSHRTIREAVDALAAMGHNRGGRRAVIHVKAGVYHEKVVIGSKMHNVM FVGDGIDRTIITGNRNVVQGSTTMNSATFDVSGDGFWARDITFENTAGPEKHQAVALKSSSDFSVFYRCSFKAYQDTLYV HSNRQFYRDCHIYGTIDFIFGDAAAVLQNCDIFVRKPMSQQSNFITAQGRDDPNKPTGISIQGCRVRPTSEGVSSKTFLG RPWKKYSRTVFMKSDLDGLIHPRGWGEWRGNFALSTLYYGEYMNIGSGASTQNRVNWPGFHVLRSAGEAAPFTVSRFLQG DRWIPASGVPFSSEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| SMART | 5 | 148 | 144 | 2.1E-5 | ||
| TMHMM | 7 | 26 | 20 | - | – | |
| Gene3D | 14 | 151 | 138 | 6.9E-7 | ||
| PANTHER | 15 | 495 | 481 | 4.1E-212 | – | |
| PANTHER | 15 | 495 | 481 | 4.1E-212 | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 495 | 477 | - | – | |
| Pfam | 22 | 133 | 112 | 3.1E-13 | ||
| SUPERFAMILY | 22 | 150 | 129 | 1.26E-11 | ||
| CDD | 56 | 151 | 96 | 1.13943E-20 | – | |
| Gene3D | 178 | 495 | 318 | 1.1E-127 | ||
| SUPERFAMILY | 179 | 493 | 315 | 8.11E-110 | ||
| Pfam | 184 | 481 | 298 | 2.4E-137 | ||
| ProSitePatterns | 332 | 341 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi3g1v0436900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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