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LotjaGi3g1v0439100.1

Overview

Field Value
Gene ID LotjaGi3g1v0439100
Transcript ID LotjaGi3g1v0439100.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT4G21440.1 MYB-like 102; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|A0A0S3SHG1|A0A0S3SHG1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0439100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:85203491..85205360) extracted from Lotus japonicus Gifu genome v1.2.

AACAAAACAAAAGTTTACTTTCCTCGCCTTTGAGAATTGAGACACAAAGCTTTCTATCTTTCGTGTTTGATTGAGTGCAC TTTTCGGCTGCATTTTTGGAACTCATCCACACCTCCTTTTGAAATGGGAAGAGCACCTTGTTGTGACAACAAAAGTGGAC TCAAAAAAGGTCCATGGACACCTGAAGAAGATAACTTGCTCATCAACTATATTCAAACTCATGGACCTGGAAATTGGCGA AATCTCCCAAAAAATGCTGGTAATTCTTCTACTAAATACAAGTTTAATTCTTCTTCTCTATATATCCTTCTTAACCTCCT ACTCCACATTTTTATGTACTCATCACTAATTATATTATATGTTGGTTGATTACAGGTCTGCAAAGATGTGGCAAGAGCTG TCGCCTTCGATGGACAAATTACCTGAGGCCTGATATCAGAAGAGGAAGATTTTCCTTTGAAGAAGAAGAGACCATCATTC AGCTACACAGTGTCTTAGGGAACAAGTACGTCTCTTATTTGTTTATTCTTTCATCTCCTTAAAATATCTCAACTTTTTTC ATAAATTAATTGACGACTATCATACTCATGAAATTAGTTTCAAAAGAAAATACTCATGAAATTGCTAAGTTTTAGACATG ATTCACGTTTGGTCCATGTTAATTTACATATCCAACATAACATATTAATTGTGATAAAAATTTAGTTTAATGTTGAAATA ATCTTAATCATAAATTCTATGACGGATCATGTTAAAAATTTATTGGCTCATAAACCATGTTTTTAATACACATGTTATTT ACGATATGTTTCTTTATGTGTTAAAATTAATCAATCTTATAAGTTTGTGAACTAAATTTTTCTTGGCCTGGAGTAGACAA ATTTTCAAATGGCTTATGTTATAATCTTGGTTGTTTGTGCATATTTAGGTGGTCTGCTATAGCGGCTCGATTGCCAGGAA GAACAGACAATGAAATCAAGAACTACTGGAACACCCACATCAGAAAGAGACTACTCCGAATGGGAATTGATCCTGTAACT CACGCTCCACGCCTGGATCTTCTTGACATGTCCAATGTTCTCAGAACAGCATTAACTAACCCAGCGTTTCTGAACCTTCA AGGCTTGTTTGGTGCTCAATCGTTGGTGAACCCTGAATTGTTAAAGCTAGCAGCTACTGCCACTTTGTTATCTTTAAAGA ATGACAACACAGGCTTGATTTCACAAAATCCACAACAAATCAATGGTATCATGAATTGTCATCAGGTGCAGAACCAAGTT GTCCCACCAGAGTTTACAACGAGCCAGCTCCAAACACCGATTCAAAGCAACAACATGGCGATGAACATGAGCAGTTCAAG TTCTCCGGAGAATTCAAATTCGATTAACCCTTCGTATTTTGGTGACGGTTTGGTACCTCAACAATACCAAGTTGATAATT TGCAACAGAACCTGGAATCTGTGTATCAAAACATGATGGGATATGGCTCAGTTCTGTCAACGCCTTTATCTACCCCAGGA ACCACGACGCTAAATTCACCGGCCAACTTTGCGAATAGCAGCGCAGAGGAAGAGAGGGACACTTATTGCAGCGACATGTT CAAATTCGAGATTCCTGAGAGTCTAGACATTAGTGACTTCTTGTAAATATGTCTCTATGTATGGATTGTGTGATGGCGTT TGTAAACTACTGCTAGTTAGTTTGCATTTTTTATTGTTTATTTTAGGCTACAGGGGGATTTGTTGTTGGGTTGTTTCTTA GTTTTATCATTCATTTTTGCTTTCCCGTTGTCAATAATATTGTTGATAATACAAGTACTCTTTGTATTTTATTCTTTTGT ACTTTCATCTGAATGTTTTCTCATGTTGTA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0439100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGAGCACCTTGTTGTGACAACAAAAGTGGACTCAAAAAAGGTCCATGGACACCTGAAGAAGATAACTTGCTCAT CAACTATATTCAAACTCATGGACCTGGAAATTGGCGAAATCTCCCAAAAAATGCTGGTCTGCAAAGATGTGGCAAGAGCT GTCGCCTTCGATGGACAAATTACCTGAGGCCTGATATCAGAAGAGGAAGATTTTCCTTTGAAGAAGAAGAGACCATCATT CAGCTACACAGTGTCTTAGGGAACAAGTGGTCTGCTATAGCGGCTCGATTGCCAGGAAGAACAGACAATGAAATCAAGAA CTACTGGAACACCCACATCAGAAAGAGACTACTCCGAATGGGAATTGATCCTGTAACTCACGCTCCACGCCTGGATCTTC TTGACATGTCCAATGTTCTCAGAACAGCATTAACTAACCCAGCGTTTCTGAACCTTCAAGGCTTGTTTGGTGCTCAATCG TTGGTGAACCCTGAATTGTTAAAGCTAGCAGCTACTGCCACTTTGTTATCTTTAAAGAATGACAACACAGGCTTGATTTC ACAAAATCCACAACAAATCAATGGTATCATGAATTGTCATCAGGTGCAGAACCAAGTTGTCCCACCAGAGTTTACAACGA GCCAGCTCCAAACACCGATTCAAAGCAACAACATGGCGATGAACATGAGCAGTTCAAGTTCTCCGGAGAATTCAAATTCG ATTAACCCTTCGTATTTTGGTGACGGTTTGGTACCTCAACAATACCAAGTTGATAATTTGCAACAGAACCTGGAATCTGT GTATCAAAACATGATGGGATATGGCTCAGTTCTGTCAACGCCTTTATCTACCCCAGGAACCACGACGCTAAATTCACCGG CCAACTTTGCGAATAGCAGCGCAGAGGAAGAGAGGGACACTTATTGCAGCGACATGTTCAAATTCGAGATTCCTGAGAGT CTAGACATTAGTGACTTCTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0439100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRAPCCDNKSGLKKGPWTPEEDNLLINYIQTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIRRGRFSFEEEETII QLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSNVLRTALTNPAFLNLQGLFGAQS LVNPELLKLAATATLLSLKNDNTGLISQNPQQINGIMNCHQVQNQVVPPEFTTSQLQTPIQSNNMAMNMSSSSSPENSNS INPSYFGDGLVPQQYQVDNLQQNLESVYQNMMGYGSVLSTPLSTPGTTTLNSPANFANSSAEEERDTYCSDMFKFEIPES LDISDFL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF1074
1 324 324 1.0E-123 –
PANTHER
PTHR10641
1 324 324 1.0E-123
IPR015495
ProSiteProfiles
PS51294
10 66 57 25.685
IPR017930
Gene3D
G3DSA:1.10.10.60
12 68 57 4.6E-21 –
SUPERFAMILY
SSF46689
12 109 98 2.21E-31
IPR009057
SMART
SM00717
14 64 51 7.0E-15
IPR001005
Pfam
PF00249
15 62 48 2.9E-15
IPR001005
CDD
cd00167
17 62 46 1.75227E-13
IPR001005
SMART
SM00717
67 115 49 1.1E-15
IPR001005
ProSiteProfiles
PS51294
67 117 51 20.184
IPR017930
Pfam
PF00249
68 112 45 3.2E-14
IPR001005
CDD
cd00167
70 113 44 1.66283E-12
IPR001005
Gene3D
G3DSA:1.10.10.60
70 117 48 1.8E-19 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0439100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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