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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0440100 |
| Transcript ID | LotjaGi3g1v0440100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G11900.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5BIV3|PPR35_ARATH Pentatricopeptide repeat-containing protein At1g11900; TrEMBL-Plants: tr|A0A0B2RVY2|A0A0B2RVY2_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi3g1v0440100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85319358..85323667) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGTTTTATCACAGATACATAATATAACAGGAATCACCGGTCCATAAATATTATGTTACCAATTTTAACTCTTAATC CAATACTATAACATAAAAGAGAAAAAAAATAAAAACAAGAAATGTTTGACTTACTTCTAGCGACCCAAAGCCAGTGAAAG AGTAAAGCCGAGTAGGAGTAACAGCCATTATATAATACCGAGTCCCATTGATTATGCTAGCTGTTTCCATCTGAACAGAG AGGACAAGAAGCAGAAATTGAATGCTTATTCACATCTGAGTTGAATTTATGTAAAAATGGGATGAAACCATAGATAACGT CTTCAACAAAGGAAACTAAAACGGTAAACAGAAGATATACCTGCAAACCCATAATAGCTTCAGGAAGTTCTGCTAATTCA AAGAGAAACTTGATATACTTTTCCTTCTTGTCCTTCTCATCCACAGCCAGTTCATGAAGTTGACCATTTTCAGTACCAAG AATGACTTCCTTCGTGGAAACTGCAGTTAAAAAGTAAAATCAGAATCTCAAGCAGGAACAAATACATGAAGAAAGTCTTT GCTATACATAAATCAGCAAGCGATAATCATCAATCGAAGTGATTAACTAACTACCTTCAGTTATCTGTTGCCGATTCCAC GCAACAGCATTCACAACAAGACCTTTCAGCTTGCTCAAAACTCGAGGCTTCGTCCATTTGGCATGAGTATAGAAAGTTTC AGCTCCCCCAGGACCAACAACAGTGGCAATACAATGACTCCCTCCTGGATCAACAAAAACCCTGTGGATTGACTGGTCCC CCGGACGACCCGCCGAGAGATCAAACTCTGTACACCAACAGATAACAACCTATCAGACTCTCACCAGCCCAGTTGAATAA ACAGCAGAATATCAAAACACAAGAAAAACTCCAAATTCCAGCATAAGCTAAAGCAAACCATCATCAACCCCCAAGAACAA AATCATTGACACTCTCTATCTTCATTGACAAATAAAATCACCAATTTAGATACCCAAAAAGCAAAAGTGACTAAATATGA GGTATCTATATGAATGGAAACTTCACCATGTGAATCGCCAACCCCAAAATCGTGTCTGATGACCCATCCTCTGCTGGTTC CGATCACAATGACATCGTTTCCAGCAGTCATACAGGTGATAACTCCACGCCCCTTTGCAGCATAGCGTTCGAGGAGGTCC ACTGTGAACACTTGTCTCCCTTGATCCATCTATCGATTCCAATTGGAAACATGAAACAACAGGAAATCGGAGAGTGTGGA AAACCCTCGCAAGATGAAACGAAAGCGAAGAATTCAGTGATTTCGATCACGAAATTCAGAGGCCGAACAAGAAGAAGGGA AGAGGAGAGAATGAAGTGAACTTGGAAAAATTGGGAGAAGATGATGATGGTGTAGGGATTAAAATTCAAAAACAAAAAGA TATTTTCAGGGACTTAAATTAATATTTGTTATATTTACAGGGACCAAAAACATATTTAAGCCAAAATAAAATCAGAACAG AAGCTATGATGTTCGGTTTGTGTTGAAAACGTTGTTGGTAATCAAACAATGATGTCGGGTTCAAAGAAACAACTTGGTCT TCTTCGCTTGCACTTCAATTTCCGCTCCCCTCTTTCAACAACTACTATCAGGTACGCATGCATATATATTGTCTCTTAGA AATTGAAAGAAAATGGCTGATTTTATTCAAGAATCAATGGTTCTTACTGGACCCAGTGTAGGTGCAGATTGAATGAAATG GAAGAATATAAGATTGCATACTCAGAGCAATTTGAGAGGTTCTGTCACTCTCATATTGTCCTCATTCTCATATTAACTGA CCTATGATTAACCCTACTATCAGCTTGTAACAGCTTGTAACTACTCTAACAGACTATTTTGTTCATTTTCTCTTAACATA GATCCTAACATAATGTGTACATGGATCAGGAGGGGAAAAATTCATCAGGTCACCTATCCCCTCCCATTGGATTGAATTCT CACAACCCTCAATTTCTGTCTTGTAATGCCTCAGGTTACTCCAAAATCATCACCCTAAGGTGTTTATTCTTGCTAATGTG ATCAGGGTGTCTATTCTTGCAAATGTGATCCGGGTTGTTTACTCAACTTAATTTCAACATCAAATAGTAGCCTCGAGTGT TTCTCCTTCTGGAGCTCTCTGCTACCTCTGTCATTTTGTTGTTTGGCTTGACGCTAAGACTCTATGCTATGCTACTGTCA GTCTCATGTTGCGCAGAATTATATTCGATCTTGGATAAGGTTATATTGCTCCTCCCATTATTGGTTGAATTCAAGCCTCA TCTCATCAAACTTCCTGTCTCATGAGTGGCTGAATATCTCTGCTTAGATCTTCTCTTGTAACCTTTATATTCTCATGGCA TCTTGGACAGGTTGAAGCTTATGCAGCCTTACTGCCTTCTCCAAAGAGCTTCTCTACCACCCAAGAAAATGCTTAAAGAC ATGGAACCACCCATAGGCTCTAGCTAAGTGTTCATCAAATGACACCAAATATTCCTCCAAAGGCCGAATCTGTTTCAACC TTGACAACTATTACTAACAGCCTATAACAACAAGTTCAACAACTAAACATTTTCTCACTCATGTGTACAATTTTTCTAGT GGCAAATAGCTAAACTCTTTCCTGCTCAATAATCAATTGACTGTGAAATTTCATTTTGGTCTGCATAATGATGACTCTCA TTACAATATTGAACTGTATCATTAACACCCGAACCAATCACTATCAATCTGACTGTTTTTAACAAGTAAAATTTAATTCA CTGGCAGCTCTCAGGAGTTTTCAACAGAGTCATCTCTTGACAAAGAGAGAGGGACCGATGAAGTCTTGAAGGAATTTCTT GCCACCGTTGAAAATGCTTCAGCATCCCGTCTTAAATACAATTATGCACAGATTGATAAGATGTGCAAGACTGGAAATCT TGCAGCTGCAAGTCAAATGCTACAAATTCTAAATGATAAGAACATTGTTTCCCCAAATGTGTATAATCTCATATTAGTGA ATGCAAGTGAAAAGAATGACATTGACCTTTCATGTCAAGCTTTCAAGAAATTGGTGTTGTCTTGTAAATCCCTAAGTGCA GCCTCGTGCCTTACGTTTGCGCAGGCTTTCACAAAACTAAATGACTGTGTGGAGCTACTTAGATTCATTAAAGAAGTATC TGAGATAAGTTCAAGCACGCCATCTTTCATAAACAAGATCATTTTCGCCTTTGCCAAAAGCGGACAAAAGGATAAGGCCT TGGTGATATTTGATCATCTTAAAAGACACAACTACAGTCTGGACTTGATCACATATAATATTGTTCTAGATATCTTGGGG CGTACGGGCCGTGTGGATGAAATGCTTGAAGTGTTTGCATCCATGAAAGAAGCTGGGTTTGTCCCAGATACTGTTTCTTA CAATACTCTGATAAATGGCTTGCGGAAGGTTGGAAGATTAGATATGTGCTTTGTGTATTTTAAGGAAATGAGAGAAAATG GAATTGAACCAGATTTGCTTACATATACTGCATTAATTGAGATTTTTGGCAGATCAGGAAATGTTGAGGAGTCCTTGAAG TGCTTCAAGGAGATGAAACTGAAGGGGATTCTTCCTTCAACACATATCTATCGATCACTGATACAGAATCTAAACAAAAC AGGGAAGGTTGAGTTGGCATCAGAACTTTTGGAGGAGATGAATTCATCATCAACTCGTCTATCGGGCCCTGAAGATTTCA AGCCGAAAAGAAGGCAGAGAAAAACTTCTAAAGTGAATGTGAGTTTCAGCTGACTGTGATCTTCAAGTTCAGAAGTTTAC ATTAGTATGCTAAACTCTGCCTCGTCTCTGTTGCAATATAATGTTGCTCTCCATGGTGTTTGAAATGTAAACGTTTGAGA CATACAATTGGAGAATATAGTATTTGATCAAACAACACTTAGAAGAAATGGAAATAGGAGTATTGGAATTCAGGTTCAAA TTAGGATTCATGATGTTGTGAACTCTGTTAATATGCCATATATCCAAATCCAAGCACTAATGCAATTTATGTTAATTCCT AGTTCGACATGGTTGTTTCTGGAATAGCAATTGCTATTTATCCTTTAGTGTCTCTTAGCCGCATCAAATAGAAACCTATG ATATATTTAACTTGTTCCTTCTGAAGCAACAAATTTAAGGTTGTGTTTGCAAGAGAAGAAGTAAATGGCCTTTTTCTTAT GGATTTAGTTGAAAGTATGTTCACATTGCATTTAGCACAACACATGGCTAAATTAGTTGAAAATCGGTTG
CDS sequence (LotjaGi3g1v0440100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCGGGTTCAAAGAAACAACTTGGTCTTCTTCGCTTGCACTTCAATTTCCGCTCCCCTCTTTCAACAACTACTAT CAGCTCTCAGGAGTTTTCAACAGAGTCATCTCTTGACAAAGAGAGAGGGACCGATGAAGTCTTGAAGGAATTTCTTGCCA CCGTTGAAAATGCTTCAGCATCCCGTCTTAAATACAATTATGCACAGATTGATAAGATGTGCAAGACTGGAAATCTTGCA GCTGCAAGTCAAATGCTACAAATTCTAAATGATAAGAACATTGTTTCCCCAAATGTGTATAATCTCATATTAGTGAATGC AAGTGAAAAGAATGACATTGACCTTTCATGTCAAGCTTTCAAGAAATTGGTGTTGTCTTGTAAATCCCTAAGTGCAGCCT CGTGCCTTACGTTTGCGCAGGCTTTCACAAAACTAAATGACTGTGTGGAGCTACTTAGATTCATTAAAGAAGTATCTGAG ATAAGTTCAAGCACGCCATCTTTCATAAACAAGATCATTTTCGCCTTTGCCAAAAGCGGACAAAAGGATAAGGCCTTGGT GATATTTGATCATCTTAAAAGACACAACTACAGTCTGGACTTGATCACATATAATATTGTTCTAGATATCTTGGGGCGTA CGGGCCGTGTGGATGAAATGCTTGAAGTGTTTGCATCCATGAAAGAAGCTGGGTTTGTCCCAGATACTGTTTCTTACAAT ACTCTGATAAATGGCTTGCGGAAGGTTGGAAGATTAGATATGTGCTTTGTGTATTTTAAGGAAATGAGAGAAAATGGAAT TGAACCAGATTTGCTTACATATACTGCATTAATTGAGATTTTTGGCAGATCAGGAAATGTTGAGGAGTCCTTGAAGTGCT TCAAGGAGATGAAACTGAAGGGGATTCTTCCTTCAACACATATCTATCGATCACTGATACAGAATCTAAACAAAACAGGG AAGGTTGAGTTGGCATCAGAACTTTTGGAGGAGATGAATTCATCATCAACTCGTCTATCGGGCCCTGAAGATTTCAAGCC GAAAAGAAGGCAGAGAAAAACTTCTAAAGTGAATGTGAGTTTCAGCTGA
Protein sequence (LotjaGi3g1v0440100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSGSKKQLGLLRLHFNFRSPLSTTTISSQEFSTESSLDKERGTDEVLKEFLATVENASASRLKYNYAQIDKMCKTGNLA AASQMLQILNDKNIVSPNVYNLILVNASEKNDIDLSCQAFKKLVLSCKSLSAASCLTFAQAFTKLNDCVELLRFIKEVSE ISSSTPSFINKIIFAFAKSGQKDKALVIFDHLKRHNYSLDLITYNIVLDILGRTGRVDEMLEVFASMKEAGFVPDTVSYN TLINGLRKVGRLDMCFVYFKEMRENGIEPDLLTYTALIEIFGRSGNVEESLKCFKEMKLKGILPSTHIYRSLIQNLNKTG KVELASELLEEMNSSSTRLSGPEDFKPKRRQRKTSKVNVSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 336 | 309 | 6.1E-46 | – | |
| ProSiteProfiles | 165 | 199 | 35 | 8.013 | ||
| Gene3D | 167 | 357 | 191 | 2.9E-49 | ||
| Pfam | 172 | 196 | 25 | 0.31 | ||
| ProSiteProfiles | 200 | 234 | 35 | 12.989 | ||
| TIGRFAM | 202 | 236 | 35 | 7.1E-11 | ||
| Pfam | 202 | 232 | 31 | 1.4E-6 | ||
| Pfam | 234 | 278 | 45 | 5.3E-14 | ||
| ProSiteProfiles | 235 | 269 | 35 | 12.912 | ||
| TIGRFAM | 237 | 270 | 34 | 1.4E-10 | ||
| ProSiteProfiles | 270 | 304 | 35 | 12.43 | ||
| TIGRFAM | 273 | 305 | 33 | 3.1E-8 | ||
| ProSiteProfiles | 305 | 339 | 35 | 8.769 | ||
| Pfam | 308 | 334 | 27 | 0.017 | ||
| MobiDBLite | 333 | 362 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0440100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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