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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0442900 |
| Transcript ID | LotjaGi3g1v0442900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of Vps4 activity in the MVB pathway protein; TAIR: AT2G14830.1 Ist1p; Swiss-Prot: sp|Q54I39|IST1L_DICDI IST1-like protein; TrEMBL-Plants: tr|I1LUF3|I1LUF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0442900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85559526..85562918) extracted from Lotus japonicus Gifu genome v1.2.
AGGAGAAATTTCATAACCATCTTGTGGTTTTCCCATTATGACGCGGGGTGACTAGGAGTGGAGCAGTTTTTTCAATGAGA ACAAAACTGTCTCCTTCTTTCCTAGTCCCACTACTTTTGACATATGCTGCCAATTCATCCCACTCTTCTCTCCACAAAAC TGAATTACCAAGTGGTGCTTCAGTTATTCTTCCATGACCCTTTTGCTAACTATAACTCCTCTTCCTGTTTGTGACCACAA TCAGATTTAACACTTTAGCTTACAGCTATATATCCATCTTGTTTTCACTTTTGACTCCAATGAACTCAGCAGTTGCCATC AAGTTTTAGTCAGACATGTTTGCCTTATTGTTTGGTTGGTCCAAAGCTTCCAAATGGTAACTTTACTATGTCCAGTAATT TGAAAACTTTGAAATTGTCACGCTGCTTAAGAACCATGTGTGATTTCAAGTTTCATCCTTAATTTTTGCAGTAAGAAGGC GATCAAAAGAGCACGGTCCCGGCTTCGGCTACTCAAGAACAAGAGGCAGGCAATATCAAGACAACTGAGAAAGGACTTGG CTGAGCTAATACAAAATGGTCATGAAGAAGTTGCTATTAACCGGGTTTGTTAAATAACATGCATAGTCAGTGTTGCATAA TCATCTCTATTCATTTAGAGCGTTTTCTTTGCATTGAAACATGAGTATTGGAAGATGTTTTTCCCATAAACAAAGTCCCA ACTATATAACTCTGTATTGTACTAGAAAAATGCAAACCCGGTCTTACCTTCCATTTTTACAATACACTAATTCCATGACT TGAACTTGTGACCACAAAGTCACATAGCAGCAACTTTACCGTTGTGTCGAGCCTCGCCCTCATAACTCTGTATTGTACTA GTTTACTAAATTTCCCTTTCAAATTTCAAATTAATGATCTGATAGAATTATGTATATGGGTGGTGCATGCTTGTTTAATA CTAGAAGAATTTGTGTTTACTTCAAAGTCTGTTTAGGATTTGTGTTTTGTAACATTTAATCTCCACACTGATTCCGCTCC TAAGTTGATGAATGAATAATGATATAGATTATAGAACCACTTTTAGGTGAAGTTTTTCAGTGAAACTCTGTAGATATGAA ACTACAAATCAATCCTGTTCTGTGTATATTTTAGTAATACATCACTGTTTGATCTTTTTCTCCAATTCCATTAATTGTGC ATTTTTTGTTTAGAACACAATCTTGTAGTCCAAAATCTTATAATTTTTCTCAAATTTTAGGTTGAGCAGCTTATGCAAGA TGAAAGCCTGGCAGCTGCATATGAATTGTTAGATCATTTCTGTGAATTTATCCTGACTCAACTATCCTATATCAGAAGAC ACAAGTACAAAAAGCTTTCTTTCTACCTATCAGTATCTAGATCCAATAATAAATTTGCCACCCTCTCAAACTTGCCAATT TTTTTTTTCTGATGGTTCATCTTTCCAAAATCAGGGACTGTCCAAATGATATTAACGAAGCAGTTTCTAGTCTTATATTT GCTTCTGCAAGATGTGGAGATCTTCCTGAGCTCTTTTCTATCAGAAAGCTCTTTCGAGAGCGTTACGGCCAGAAGTTTGC AACTACAGCTTTGGAGCTATATCCAGGAAATCTTGTAAACAAACAGGTACTTTTTTTCTTCTAGTAAAGTATGATAACTT ATATTTGATGCAATAATGTATGCATATTCATGACATTTTAAAATCACAGTTAAAAGAGAACTTGTCAGGAAAGTCTGTGC CTGATGATCTCAAGTACAGAGTGGTGGATGAAATAGCTAGGGATCACTGTCTCCAGCAACAAGTTTTGGCCATACAATAC TACCCCAATTGGCAACAAATGAAGGTCATTCTTTTGTACTATGGTCAACGTAATATTAATGGATTTATAATCTTGTTGTT CAATAGTACCAAATGTCATTGAATATATCTGTAACAGGTGAAAGAAAACAAAGGCTATCAACTAGTGGAAAGTGATGCCC AAAAGATTGATACAATTGCAGGATCTAAAGTCCATCCATCAGAAATTGAAGATGTCAAATGTGTTCATTTATCAATTTCC AATCCAAGTGACTCTTGTTATCAGCCAGAATCTAATGCTTCTGCAATTGTCTCCACTGTTCAGAAATATCCACCATATAC TGTGAGCAGTCCTTTGCAAAAGAAAGTAGGAACTTTAGAAATTGTAGATTATGTTGAAGACATTGAGGAATGTCAATTAT CCGTAGCAAAAGATGGTACTTGCCAGGACCAAACGCTATTTAAGTTCAGATCATGTGGTTTTCCCATGAGAGAAAAAGCT GAATTTGGTTATGATAAGAGTCATATAGACCAAGGTGAATCACAGAATGAGAAATCAAGCATGAGAATCTCTAGCAGGAG TAAAAGGGCACCTGAGACAAGATCAAGAAGGAGATCAACCTCACTGGAAAACCAATGCATTAGGGACATTGGATACATGA AATATTATCAAAAGCCTTGCAGGAAGCACCAGAAGAAGCCTTCACTAGAGGAGGGGGAAATTTTCAGCTTTGAAATGAGT GGATGCTGCAGCTTGGACAAGCCATGTTATTTTGGCCTATATGGTGATCATAAAAACTGCTCGGAAGCTCGATCAGTGAA GCCAAAGAGAGAAACAAGAGCTACTACACATGTTCAACAAGGAGGTCTGCTTGATGAATGTTGTCATGAGTTGAGCAATG GAATGGAATTAGTAGCCATCTCTCAGAGACCAAACAACAAGCATCTTGTACTCAACAACCACACAAATGAAATGGAAGCA GTGATCTCTACATCCCACAAAGTTTACAATCCAAGGACTACTACTGGTTTTGTTGATTCCTTAACAAGAATGGAAACAGA AGCTCCATATTCGAGGGCCATGACGATGCCTCAAGAGCGGCGCGGAAATGGTGAAGACAAGATGTTAAGGACATATTCAT GTCCTACTGAGCATCCTAATCATGTTCATCCTAAGTTGCCGGATTATGATGACATAGCTGCCAAGTTCATTGCTCTCAAG AGAGACCAGCAAAGAAAGTAGAGGAGGCAAATATACAGCATATGAAATTTTGAATTACTTGTTCAAATACCTATTTATTA GATTAATTTTACATATGAATCAATATTCTTTAGCATTCGTTCATGTAAGGTTACAATGATTAATTTTTTTCTGGCAGCAA TTTTTTGGGAAGAATAAACATATAGCCATCTACCTTTTTCTAAATTTGTTGATTATTCGACCATGAATTTGAGTTCACTT TTTTTTTCCTTTTCTTTAATTTTTTTTTAAAGGAATTACGCTCAAAATCAATTAACCAAAGAGTGGCTTAATCAGAGGTA ATGACACTTTCAAAGCCAACGGGACAATCCTCA
CDS sequence (LotjaGi3g1v0442900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGCCTTATTGTTTGGTTGGTCCAAAGCTTCCAAATGTAAGAAGGCGATCAAAAGAGCACGGTCCCGGCTTCGGCT ACTCAAGAACAAGAGGCAGGCAATATCAAGACAACTGAGAAAGGACTTGGCTGAGCTAATACAAAATGGTCATGAAGAAG TTGCTATTAACCGGGTTGAGCAGCTTATGCAAGATGAAAGCCTGGCAGCTGCATATGAATTGTTAGATCATTTCTGTGAA TTTATCCTGACTCAACTATCCTATATCAGAAGACACAAGGACTGTCCAAATGATATTAACGAAGCAGTTTCTAGTCTTAT ATTTGCTTCTGCAAGATGTGGAGATCTTCCTGAGCTCTTTTCTATCAGAAAGCTCTTTCGAGAGCGTTACGGCCAGAAGT TTGCAACTACAGCTTTGGAGCTATATCCAGGAAATCTTGTAAACAAACAGTTAAAAGAGAACTTGTCAGGAAAGTCTGTG CCTGATGATCTCAAGTACAGAGTGGTGGATGAAATAGCTAGGGATCACTGTCTCCAGCAACAAGTTTTGGCCATACAATA CTACCCCAATTGGCAACAAATGAAGGTGAAAGAAAACAAAGGCTATCAACTAGTGGAAAGTGATGCCCAAAAGATTGATA CAATTGCAGGATCTAAAGTCCATCCATCAGAAATTGAAGATGTCAAATGTGTTCATTTATCAATTTCCAATCCAAGTGAC TCTTGTTATCAGCCAGAATCTAATGCTTCTGCAATTGTCTCCACTGTTCAGAAATATCCACCATATACTGTGAGCAGTCC TTTGCAAAAGAAAGTAGGAACTTTAGAAATTGTAGATTATGTTGAAGACATTGAGGAATGTCAATTATCCGTAGCAAAAG ATGGTACTTGCCAGGACCAAACGCTATTTAAGTTCAGATCATGTGGTTTTCCCATGAGAGAAAAAGCTGAATTTGGTTAT GATAAGAGTCATATAGACCAAGGTGAATCACAGAATGAGAAATCAAGCATGAGAATCTCTAGCAGGAGTAAAAGGGCACC TGAGACAAGATCAAGAAGGAGATCAACCTCACTGGAAAACCAATGCATTAGGGACATTGGATACATGAAATATTATCAAA AGCCTTGCAGGAAGCACCAGAAGAAGCCTTCACTAGAGGAGGGGGAAATTTTCAGCTTTGAAATGAGTGGATGCTGCAGC TTGGACAAGCCATGTTATTTTGGCCTATATGGTGATCATAAAAACTGCTCGGAAGCTCGATCAGTGAAGCCAAAGAGAGA AACAAGAGCTACTACACATGTTCAACAAGGAGGTCTGCTTGATGAATGTTGTCATGAGTTGAGCAATGGAATGGAATTAG TAGCCATCTCTCAGAGACCAAACAACAAGCATCTTGTACTCAACAACCACACAAATGAAATGGAAGCAGTGATCTCTACA TCCCACAAAGTTTACAATCCAAGGACTACTACTGGTTTTGTTGATTCCTTAACAAGAATGGAAACAGAAGCTCCATATTC GAGGGCCATGACGATGCCTCAAGAGCGGCGCGGAAATGGTGAAGACAAGATGTTAAGGACATATTCATGTCCTACTGAGC ATCCTAATCATGTTCATCCTAAGTTGCCGGATTATGATGACATAGCTGCCAAGTTCATTGCTCTCAAGAGAGACCAGCAA AGAAAGTAG
Protein sequence (LotjaGi3g1v0442900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFALLFGWSKASKCKKAIKRARSRLRLLKNKRQAISRQLRKDLAELIQNGHEEVAINRVEQLMQDESLAAAYELLDHFCE FILTQLSYIRRHKDCPNDINEAVSSLIFASARCGDLPELFSIRKLFRERYGQKFATTALELYPGNLVNKQLKENLSGKSV PDDLKYRVVDEIARDHCLQQQVLAIQYYPNWQQMKVKENKGYQLVESDAQKIDTIAGSKVHPSEIEDVKCVHLSISNPSD SCYQPESNASAIVSTVQKYPPYTVSSPLQKKVGTLEIVDYVEDIEECQLSVAKDGTCQDQTLFKFRSCGFPMREKAEFGY DKSHIDQGESQNEKSSMRISSRSKRAPETRSRRRSTSLENQCIRDIGYMKYYQKPCRKHQKKPSLEEGEIFSFEMSGCCS LDKPCYFGLYGDHKNCSEARSVKPKRETRATTHVQQGGLLDECCHELSNGMELVAISQRPNNKHLVLNNHTNEMEAVIST SHKVYNPRTTTGFVDSLTRMETEAPYSRAMTMPQERRGNGEDKMLRTYSCPTEHPNHVHPKLPDYDDIAAKFIALKRDQQ RK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Gene3D | 3 | 186 | 184 | 3.4E-57 | ||
| PANTHER | 8 | 560 | 553 | 1.4E-160 | ||
| PANTHER | 8 | 560 | 553 | 1.4E-160 | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Coils | 11 | 38 | 28 | - | – | |
| Pfam | 15 | 176 | 162 | 4.7E-51 | ||
| Phobius | 15 | 562 | 548 | - | – | |
| MobiDBLite | 321 | 357 | 37 | - | – | |
| MobiDBLite | 338 | 357 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi3g1v0442900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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