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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0448500 |
| Transcript ID | LotjaGi3g1v0448500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT5G60860.1 RAB GTPase homolog A1F; Swiss-Prot: sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B; TrEMBL-Plants: tr|I3SAN5|I3SAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0448500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86171293..86174210) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCAACCGTTATCCTTTGAATCAATCTTCACCATGAAGAAACGTTCACCAAGCAAACTCCATTTCTTGTTCTTATTTA CATTTTATTTAATTGTTTCTTAGAACCGTTTTAAACATAAAATAAAAAAATAAAAAGTTAATTCAAATTTCAAACATTCT ACTCACTTTATTTTTAAAAATATTGAATTAACGCCCTTTTAGCCTTCTGAAAAAATAAATAAATAAAAAGAAATTAATTA GTAGAAGATTGAAGATTCATTGAGTCATTGATGAATATTGAATCCTTGTCACTTTTCTCTTTCTCTCTCTGAGTACAATC ACAAGTAGAATCAATTAATACAGAAAAAGCTTAAATCTTTGAATAAACCCAAATCATCCCCACCAACCCTTTTCATTTCA TTTCGATCTGCGAACCAGGGACCAATGGGTACTTCCGATGAGGACTACGACTACTTGTTCAAGCTGGTGTTGATCGGAGA CTCCGGTGTCGGCAAGTCCAACCTGCTTTCTCGATTCACCCGGAACGAGTTCAACTTGGAGTCCAAGTCCACCATCGGCG TTGAATTCGCCACCCGCAGCGTCCGCATCCATGATAAGACTGTCAAGGCGCAAATCTGGGACACCGCTGGTCAAGAAAGG TCAATCCTTTATCATGTTTTCTTTTGCTTTTCTTCATGATTCTTGTGGTTTTGAGATATATAGGGTTTGTTTTGATCGAT GATTAGGTTAAATGTTAATGGGTCGGTTTGGTTTGATTGGTTGTTTGTGGGATTGCCTGATCTTGATGTTGGGACACTGA AAATGGAGGATTGTTTGTTTGAGAATTTTGTTGTGGGAGGGAGGATGGAATTGTGAATGGGGTTTAAGAATGAATGAAAA ATTGTTATTTCTTCAATTTGTTATGTGGTATATGGTTGAGGGAAGATTTTCAAGAAACAGTCAATTGGGGTCAAAGATTG GGTTCTTCTTCCCTTTGTATGAAATTATGGATGGAAGGATGAATGGATGGATGACCCTAATCCATTGATTTTGGTTTTTT TGAAAATGGTGATTTGTTCAAATTCTCAAGGTGTGTTTGTCTGAGATAATAATATGCTGCTCTAGATTGTTGTGAATCAA AAGCTTAGATGATATTAGTATAATTGTAGTGTGAAATTTGATGTTTTTTTTTATCATCATGATTGTTATTGTGTTGTGTC TTCAGCTTCTGATTGGTTATGTCTAGGAGACACTGCGTTCACGCAAGTATTGCTTTGTTTCAAAAATTTCTCTAGGGATT TAGATTCCAGGGTATGATTCTGCTTCTGTTAGAGAAAAAAGGACAGTTTTTTGTTTTTCCTGTAACTAGAAATCCATACA ACCAATCATAGTAAGTGATTATGTAAAATTTATGTAAAATGTTATGCATTTCTCTTTTTGACAAGATCATATCATGTTAT TTTTAGATAGGATATCATCCAACTAGCTATTAGAAGATTCATTGTCAGATAGCCATGAGAAGATGGCAGAAGACCTGACT TTTCATACTTTTGCTTGTTTTGTATTATGTTTTGAGTTTTGCATACTTGAGGCATTTATTTGAAATGAAGTGAGGCAGGG CCCTGAGTCAGTGACTCCCTTAATTATGACTTCTCCAATTAGCCACTTTTAAACCTGCTATGTTCTTTTCTTGTGCATAC TTTCTAACCATAACTAGATAGATTATTGATGAGTCTTTTTGATATGCCACAGATACCGTGCAATCACAAGTGCTTACTAT AGAGGAGCTGTTGGTGCATTGATTGTGTATGATGTGACCAGGCAAGTGACTTTTGAAAACGTGCAGAGGTGGCTGAAGGA GCTTAGGGATCACACTGATGCCAACATTGTAATCATGCTTGTTGGAAACAAGGCAGATCTTCGCCATTTGCGTGCCGTGC CCACTGAAGAAGCCACTGCATTTGCTGAGAGAGAAAACACCTATTTCATGGAGACCTCTGCACTGGAGTCCTTGAACGTG GACAATGCTTTCATAGAAGTGCTCTCTGAGATATACAATGTTGTGAGCAGGAAGACTCTTGAGAAGGGGAATGACCCTGG GGCCTTGCCTCAGGGGCAGACCATCAACCTTGGTGATGTTTCAGCAGTTAAAAAGCCTGGATGCTGCTCGGCGTAGTTTG AGAGAGGTATAAGAGATAGAAGGTCTTGGTTATATAGTATTGTAGGATGTGTAGTATTTCATGATTCAACTAAATTTTCA TCATTTTGGGATCCATATCAAATGTGTTTGATACTTAAAAAATTTGACCTACTTGTTTTGGGAGTTTCATTATTTCATTT TGTTCTTTGGTTTGGTGAAATAGATTGATTCAACAACAGCCCTTTATTGTTGTTGGTACAATGTAGCTGTTTTCTTCAAT TTTCTGTCTTGATCTGTCTCTTTAAAGTGAGTTGCACTAAACTAGAAAAAGCTGATATTAACATGACCAGTAAAATTTGA ACTAGGCTGCAAAGCCTAAGGATTTGCTAAAGCTAAAATCACAAACACTAAACTGTCAATACATTTTTACAAAGACAATA TGATACATTTTTAACATCTTTTTGGGCGACTATAGGACTATGAGATCCTGGCAAATGAGGGTACTGTCTAGTGTTAAAGG CAAACCTTTGTCCGTAGTATCATTTTTCATACACGTAGTTAAGGGACTTTAACCTCCTCCTAAGTTTCAAAAAGATAAAA TCTCCTCCTTGCACCACCAACACATGATTAGTTACATAAGTTAGTTGGAGCAACATAAAAATTTAGTATCAAACTAGTTA ACAAAATATAAACAACACAAAAGAACATATTATATGATCTTCTTTATATTTTGTGTGGCACCGGACGGCACACTAAGTGC ATTCTAAAAAATATTTTATTTTATTTTAGAATTTTGCT
CDS sequence (LotjaGi3g1v0448500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACTTCCGATGAGGACTACGACTACTTGTTCAAGCTGGTGTTGATCGGAGACTCCGGTGTCGGCAAGTCCAACCT GCTTTCTCGATTCACCCGGAACGAGTTCAACTTGGAGTCCAAGTCCACCATCGGCGTTGAATTCGCCACCCGCAGCGTCC GCATCCATGATAAGACTGTCAAGGCGCAAATCTGGGACACCGCTGGTCAAGAAAGATACCGTGCAATCACAAGTGCTTAC TATAGAGGAGCTGTTGGTGCATTGATTGTGTATGATGTGACCAGGCAAGTGACTTTTGAAAACGTGCAGAGGTGGCTGAA GGAGCTTAGGGATCACACTGATGCCAACATTGTAATCATGCTTGTTGGAAACAAGGCAGATCTTCGCCATTTGCGTGCCG TGCCCACTGAAGAAGCCACTGCATTTGCTGAGAGAGAAAACACCTATTTCATGGAGACCTCTGCACTGGAGTCCTTGAAC GTGGACAATGCTTTCATAGAAGTGCTCTCTGAGATATACAATGTTGTGAGCAGGAAGACTCTTGAGAAGGGGAATGACCC TGGGGCCTTGCCTCAGGGGCAGACCATCAACCTTGGTGATGTTTCAGCAGTTAAAAAGCCTGGATGCTGCTCGGCGTAG
Protein sequence (LotjaGi3g1v0448500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTSDEDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVRIHDKTVKAQIWDTAGQERYRAITSAY YRGAVGALIVYDVTRQVTFENVQRWLKELRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLN VDNAFIEVLSEIYNVVSRKTLEKGNDPGALPQGQTINLGDVSAVKKPGCCSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 200 | 198 | 4.9E-114 | – | |
| PANTHER | 3 | 200 | 198 | 4.9E-114 | – | |
| SUPERFAMILY | 6 | 184 | 179 | 1.15E-59 | ||
| ProSiteProfiles | 7 | 210 | 204 | 35.984 | – | |
| CDD | 9 | 173 | 165 | 9.00853E-130 | – | |
| SMART | 9 | 175 | 167 | 5.8E-29 | – | |
| Gene3D | 9 | 190 | 182 | 4.8E-67 | – | |
| TIGRFAM | 10 | 167 | 158 | 1.7E-39 | ||
| PRINTS | 12 | 33 | 22 | 5.7E-42 | – | |
| SMART | 12 | 175 | 164 | 1.1E-110 | – | |
| Pfam | 13 | 173 | 161 | 2.8E-62 | ||
| SMART | 14 | 171 | 158 | 1.0E-11 | – | |
| SMART | 17 | 204 | 188 | 4.3E-7 | – | |
| PRINTS | 35 | 51 | 17 | 5.7E-42 | – | |
| PRINTS | 53 | 75 | 23 | 5.7E-42 | – | |
| PRINTS | 115 | 128 | 14 | 5.7E-42 | – | |
| PRINTS | 150 | 172 | 23 | 5.7E-42 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0448500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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