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LotjaGi3g1v0448700.3

Overview

Field Value
Gene ID LotjaGi3g1v0448700
Transcript ID LotjaGi3g1v0448700.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein family; TAIR: AT1G06270.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LNC0|PPR16_ARATH Pentatricopeptide repeat-containing protein At1g06270; TrEMBL-Plants: tr|A0A151SAQ7|A0A151SAQ7_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi3g1v0448700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:86194765..86195793) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTGGTTGGAGCAATATTGCGCCATAGATTTCTTCTTCACTTCAGTCCTATTTCAAACCAATGTTCTTCAGTTCGTTT AGTGTCTTCTTTGCAAAAGGTTGAGCAGGCTGTTAGAGCTGAAGTAGAAGCCAAAAACTACATCAAAATTCCTGACCTTC TCATGTCCTTGGAGTCCTGCCAAAACTCAAATCCTTTTTCTTTTCTTTCTTCTTTTCCTCAAACCTTACAAGTACAAATT GTTGATGAAATGTTGCAATCTTTTATACCTCTTAGACCTCGCTCTAAACCTCAGCTAGCCTATTCCTACATTCTTTCTTA TACCCTCCAAAGTTCACATCCCTTCCCTGTTGCACTTGCTGTCCTACAACGGACTCTACGTTCTGGTTGTCTTCCAGTTC CTCAGACACATGTTCTCCTCTCATCTGCTTGGTTAGACAGGCGACTTCTGCCTCTTTCTGTAGCTAATATTTTACTTGAG ATGCCGTCAATTGGATATCATCCTGACTGTGGGACTTGTAATTATCTACTATCATCCCTTTGTGCTGTTGATCAATTAGC GGAGGCTGTTAAAGTCCTGAAGGGCATGGGTGGAGCAGGATGTATTCCTGATTCAAATAGTTATGGCATTGTCATTGGTG CGATGTGCAGAGTGAGGAAGACTTCTGAGGCACAGGATTTGATGAAACAAATGGTGGTGAAATATGGGTTGACCCCAGGA CAGGGAACACTGGTGGGATTGTTTGCAGCATTACGGGCAAACAGGGACATAAGACAAGCTATCGAGATGATTGAATTCCT GGAGAAAGAGGGTTACTCTGTTGGATTTGAGAGTTATGAAGTGGTAATTGAAGGATGCTTGGAGAAACGTGAGTATGTTT TGGCTGGAAAGGTTGTGATAAGGATGACAGAAAGAGGTTTTATACCATATATCAGAGTCAGGCAGAAGATAATTGAAGGT TTAGCCAGTATCAATGAGTGGAAGATAGCTTGTGCTGTGAGACAAAGATTTGCAGCACTTAAATCTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0448700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGTTGGAGCAATATTGCGCCATAGATTTCTTCTTCACTTCAGTCCTATTTCAAACCAATGTTCTTCAGTTCGTTT AGTGTCTTCTTTGCAAAAGGTTGAGCAGGCTGTTAGAGCTGAAGTAGAAGCCAAAAACTACATCAAAATTCCTGACCTTC TCATGTCCTTGGAGTCCTGCCAAAACTCAAATCCTTTTTCTTTTCTTTCTTCTTTTCCTCAAACCTTACAAGTACAAATT GTTGATGAAATGTTGCAATCTTTTATACCTCTTAGACCTCGCTCTAAACCTCAGCTAGCCTATTCCTACATTCTTTCTTA TACCCTCCAAAGTTCACATCCCTTCCCTGTTGCACTTGCTGTCCTACAACGGACTCTACGTTCTGGTTGTCTTCCAGTTC CTCAGACACATGTTCTCCTCTCATCTGCTTGGTTAGACAGGCGACTTCTGCCTCTTTCTGTAGCTAATATTTTACTTGAG ATGCCGTCAATTGGATATCATCCTGACTGTGGGACTTGTAATTATCTACTATCATCCCTTTGTGCTGTTGATCAATTAGC GGAGGCTGTTAAAGTCCTGAAGGGCATGGGTGGAGCAGGATGTATTCCTGATTCAAATAGTTATGGCATTGTCATTGGTG CGATGTGCAGAGTGAGGAAGACTTCTGAGGCACAGGATTTGATGAAACAAATGGTGGTGAAATATGGGTTGACCCCAGGA CAGGGAACACTGGTGGGATTGTTTGCAGCATTACGGGCAAACAGGGACATAAGACAAGCTATCGAGATGATTGAATTCCT GGAGAAAGAGGGTTACTCTGTTGGATTTGAGAGTTATGAAGTGGTAATTGAAGGATGCTTGGAGAAACGTGAGTATGTTT TGGCTGGAAAGGTTGTGATAAGGATGACAGAAAGAGGTTTTATACCATATATCAGAGTCAGGCAGAAGATAATTGAAGGT TTAGCCAGTATCAATGAGTGGAAGATAGCTTGTGCTGTGAGACAAAGATTTGCAGCACTTAAATCTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0448700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVVGAILRHRFLLHFSPISNQCSSVRLVSSLQKVEQAVRAEVEAKNYIKIPDLLMSLESCQNSNPFSFLSSFPQTLQVQI VDEMLQSFIPLRPRSKPQLAYSYILSYTLQSSHPFPVALAVLQRTLRSGCLPVPQTHVLLSSAWLDRRLLPLSVANILLE MPSIGYHPDCGTCNYLLSSLCAVDQLAEAVKVLKGMGGAGCIPDSNSYGIVIGAMCRVRKTSEAQDLMKQMVVKYGLTPG QGTLVGLFAALRANRDIRQAIEMIEFLEKEGYSVGFESYEVVIEGCLEKREYVLAGKVVIRMTERGFIPYIRVRQKIIEG LASINEWKIACAVRQRFAALKS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46128
9 340 332 2.1E-124 –
PANTHER
PTHR46128:SF23
9 340 332 2.1E-124 –
ProSiteProfiles
PS51375
97 132 36 5.536
IPR002885
Gene3D
G3DSA:1.25.40.10
112 282 171 1.0E-22
IPR011990
Pfam
PF13041
168 217 50 1.7E-8
IPR002885
ProSiteProfiles
PS51375
169 203 35 9.416
IPR002885
TIGRFAM
TIGR00756
172 205 34 6.8E-5
IPR002885
ProSiteProfiles
PS51375
204 239 36 9.087
IPR002885
TIGRFAM
TIGR00756
207 239 33 0.0028
IPR002885
ProSiteProfiles
PS51375
240 274 35 5.393
IPR002885
Coils
Coil
250 270 21 - –
ProSiteProfiles
PS51375
275 309 35 7.805
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0448700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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