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LotjaGi3g1v0451100.1

Overview

Field Value
Gene ID LotjaGi3g1v0451100
Transcript ID LotjaGi3g1v0451100.1
Lotus japonicus genome version Gifu v1.2
Description Two-component response regulator-like protein; TAIR: AT2G20570.1 GBF's pro-rich region-interacting factor 1; Swiss-Prot: sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1; TrEMBL-Plants: tr|A0A1J7GFP4|A0A1J7GFP4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0451100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:86453709..86458877) extracted from Lotus japonicus Gifu genome v1.2.

CTACAAAAGATGCATACTAGAGCAAGAACAGAGATATTTGAGTGAGAGAGAAGTTACCTTGGTGATTTTGAGTTCGTTCC TGGCATCAAAATTGACCTTGTCTATGGGCACGATCCAGTGATGAACAACATCGAGAAGCTGGTAGTGAATCGCACAAGAA AAACCCTAAATGTTGGAATCGAATAAGCACACAACCAAAATCTGAAGAAAGAGAGTTGGCGAAGAAAAAAACTGAAGAAT TGAACGTTGTGAGTGAAGATTTCAGATCAAACCCTAGATTGAGGATAAAAGAAAGAGAAATTGGAGTGATTTCGGATCTA GAAACACGTTTTATGAGAGAGAAATAGAGAGAACTCTCTCACCTGTACGCGATCTCCATCACCTTATCGTTCTCACGTTC ACGTAAACCTTCAGGATTCAGAGGATGGTGAATTGGTGGTGGCGCCTTCAGTTTCAGCGAATGGAAGAAATGGTTTCAGA GGGAAACGAGGGAAAAAGCGAGGTCGCGGTGGGTCTTTGGTGGATTTATTCTCTAATTGCCGGTGCCGATGAATTATTAC CGACCAGTTTCTGATTAACACAAATCTTTTAATTTTGTGATTAAATTAGCGACGGTAACATTATTGCTGCTACAAAAATG TCGCTAAAGGCAATTTTTCTTGTAGTGTGGCATTGAATGTGCAATTAATGTGATTATGATGGAAGCAAAGATAGCGGCTA CCTAGCAAATCCGAAACATACAGCAGTCAATTTTGACAAGCATATACATGGTCTCCTTTTCACAGTTAAGACGACTTAAG ATCAAACATCCTTTAGCTGATAAGACCTAAATCTTTCTTCATATAGTATATCGGAATAATATCTCCATTAATTACAAAAT GAAAGACTACAATAATAATGACAAAAAGCTCACGAGCAATTGTGATGATTTTTCAAAAGAAAAAAACAATAATTGACGAC TCAAAAAAAGGTCCTCCACAAACCAGAATAATGCAATGGTTTCCAGACCAATACTGCAATCAGCAGCACACTCCCAAACA AAAAACACATACAAACAAAATCTCCTTTAAAACTCAGCAAAATTTTGTGGTTGACATCCTATCTCTTCTTCCCACACACT CATCACTCTCTCTCTCTCTCTCTGTAGCACTTCAAGAAACGAAAAGGCAATTAATAAATCATGTTATTGATTTGATGCAA CAATTGTAGTTGAGTTGAGTCCCCCATTATTAATATTGCTCAGCTTTTCTGAATTTTCATGCACGTGTGAACACTCCTTT AAGGGGGAAAGCATTCATAATGTTTTGAAAACATCTTATTGGAGTTTCCCTTTTCATTGTTATTCGAAGGCTTTTGAGGA TTGATGCTTGTAGTGTCACCTTTGAGGAGCAACAAAGATGAAAACCAAGAGGAGATGGAGAGCTTTTCCTTTGGAATCTC AAACGGCGGTTGTGGTGGTGGTGGTGACGAGTTTGGTGACTTTTCTGAGGGGAATTTGTTGGACAACATCAACTTTGACG ACCTCTTCACTGGCATCAGCGTTGACAGAGATGCCTTGCCAGATTTGGAGGTGTACCCGGAGATGTTCGCCGAGTTCTCC CTCAGTGGCGGGGAGGATTCGGAGATGAACTCGTCGGTGGAAAACAGCAAAACTCATGATAATGACGACAAGAATTTAAA GAAATGTGATGAAGATAAAACAACTTCTTCGAGTTCAGCAGGTTGTGGGCGAGGGGAGGAGATAGTGAGCAAAAGGGATG AATCTATGGTGGTGAATCCATCACCAAAGGATGGTGATGGAAAAGGAAGAAAATCATCAGCTCAAACAAAGAATAATCTT CAAGGGAAGAGAAAAGTTAAGGTAAAAAAACTTGCTAATTCTTATCATTCTAGCTTGATAGTATAAAAGATAAGTTTTGT TTGGCTTCCATTTCACATATACAATCAGAAAAACAAGAATTTGACACATAGAGAGAGAAGACCGAGGCTGTTAAACTTTT TTAGGATTATAAGTAGTGATGGCCGGGGTGTATTAATATGTGTGTAATTTTCTTTTTCTTGGGGTGTTAATTATTTTTAG GTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCTGTGCCTTCAAG GATTCGGGAGATTATGGGAATCGATTGTCTCACTCGCCATAACATTGCCAGCCATCTTCAAGTACATTCTTCTACATCCT ATTCCCTTTGCATTAATTGATTAATTTTCAATCTTTGTATGAATATTTCAAGCAAAAAAAATTTGGAAATAGGCAACTTA TTTGAATTTTGAACTTCTTTGAATACAAGGTTTTCAGCATAATACTCTGAAATTAATTTTTAATTTGGAGGATTTTCAAA GGAATCTTCTCTATTATTTCCTTTTATGGAAACTTATTTGAATTTTGAACTTCTAATATGCATGGAGTGTCCAAAAATGT TCATGTACATAAAGTGCTTGGATTTTATGTTTGTCTTACTGGTTGGAAGGGTTAGATTCGTATCAAGCACAATTCAAAAC TTGCATAGTGTAAAGTTATTAAGAACTTAGAGGAGATTGTATTCTAAAATGTGTAGGTTTTTGAATGATGATGCAGAAAT ACAGATCCCATAGAAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGTTGGAATCAAAGAAGACAAATGTATGGTGTA GCCGGAGGAGTGAAGAGAGAGGTGAGTCCTTGGTTGGCACCCACAATTGGTTTCCCTCCCATGACACCTCCTCCAATGCA CCATTTCAGACCCTTACACGTATGGGGGCATCCATCTACGGACCAGTCCTTCATGAACATGTGGCCTAAACATCCACCAC ATTCACGGCCATCGCCACCACTGCCGCTCCCATGGGTACCGACGGCCACTTCCCCAGCACCCCAAGACCCTAAGTTTTGG CACGCTCAACACCAACAGGTTAGCTATGTACATGCACTATATATATGTACTACGGCAAATTAACCCCCTAGGAAACTTCT GCGGTGGACCTTTTACAACTAATATATATATCTAATATATATCTAATACATATTACTTTTGATATAATTCTTATGTGTTA AAATTAATTTGTAAAGATGTCATTTTAACTTGTGAACCATGTTTTTCTTAGTTCATGGTAGACAAAGTCAAATAGAGTTT ATTTATATCTGCTTAAAAATATGTGATTTTAATGTTTAATAAAATTTCAATTTTATTTTTAATGTTTTTTAAAAATAAAA AATTAATTTATGTTCGTGTACAAATGTAGAAATTACTTTTCACTTTGAAATATAAAAATTAATAATTATTTAAAAAATTA TTAAAAATAACTCAAGGAAATATATTCAGATTTCTACTTTCTTTTTAATGTTGGGAGAATAGGCTTGAATGTGTTAGGAA TCTATGTATTGACATATCTCTTTGCTTTTGGGTTGAAGCACTAATTTTGCTTTCTACTAATATATTTAGTGTTTTTTAAA GAAATACTTAGATATCTATTTTTTTATCACAAGGACACACAAATAACTTAAAAAATAGATAGGTGATTATATTTTAAAAA ATAAGTGATTGTATATATAAAAAATAAACAATTTCAAATTGGTTTATTTCATTCTGAAATGTTACTCTCCTTCTTGGAAA ACAGACTCCAAACGCTCCAATCCCAGGAACAGCTTGCTTCCCACAACCTCTGACAGCAGCGGTAACTATTCAGTAATCGC CTTACTATTTAATTTGGAGTCGTGCACGTTGTCGTCATTTGAATTTTGGATCCTTTTATAACCAGCATTTTATTACTCCG TCATTCACATTTTACTTAGCAATTATTAAGGTGATGCCTCAATAATTAACAAATATGACATTCTATTTTTGTACAAATAT TCAGCGCTCCTACTCTAACATGCATGAAATGATGAAAGACATATTAGACATAGTACTTTTCTTTTTACAAATTGACAGTT ATTTTTTTTTTTCAGTTTTTCATTTGAATTTTGAAGTAAATTTACGTAGAAAAAATTATTTAATTTTCTATACATTTATT ATTCTCTGTCTCTCTTTTTAATTAATTTCTATACATTTAAGTTTGGGTGACTGACCATAGATGAAATACAAATATATATC ATGCAGAAATTTGGATGTCCGCCGGTTCCCGGAATCCCACCGCCGCTGCATGCCGTATACAAAACAGATGTCCGCCGCCA CCGCCGCGTCCCTGCTCCTGCTGGACCCATCTTGAACTTACATCCGGTCAGTTTCCATCTATCTTCTCTCTTTCATTTTC GTCATTTTCTATCCGACACAAAAACATGTTGCCATGTGTTAGTTAGTGTACATCAAAATTATATGTTAAATCATTCAATT TCCTTTTCAGTAATCATTGTACAATCTTATTATAATTAACAGGCCATTAGATAACACCTGATAATTATGTCTAATTGTAA CTTTTTATGAATGGATTAATTGTCATATATATGATGCACATGCTTGATATAGGTTGTGCTAGAATTGTAATTAATTAGCA ATTAAGCAAGGGAAATATTGCATGGATCAATTAATATTGGTGAATGGTTATATGTGCTTTACATTTGAAGTTTAGAATTG TTGCATGCATGATTAATTAGTTCTTATATTATATACTATTTTATATGTCCACAGTCAAAGGAGAGCATAGATGCAGCAAT TGGAGATGTTTTATCAAAACCATGGCTGCCGCTACCACTTGGACTCAAGGCTCCAGCGCTTGACAGTGTGATTGGTGAAT TGCAGAGACAAGGAGTTTCCAACATTCCACCCTCTTGTGAAGGTCACTAAACCCTAATTCGACGACTTCTCAATTCTCAC CCATTAGATTTTGCGCATTATTGCGCAATGCATGGGTGATTCATTTCTTCTTCTTTTGCTTTTCAAGTTCAAAAGGGGCA AATAAAATAAACCTTTAATTAAGAATTAATTTCTAATTTCATGTGTAATTAGTGCATGACTTAATGCAGTAGACTTGGTC ATCATTAGTCATTTTATGTATGTACTTAACCCTATGATTTTGTACTAGTCATGGTATGAGACTAGGAATCTTAATAAAAT ACTTTCATAAAATACTCTCTCCATTCATATTTGATCTTCGCAGTTCAAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0451100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTGTAGTGTCACCTTTGAGGAGCAACAAAGATGAAAACCAAGAGGAGATGGAGAGCTTTTCCTTTGGAATCTCAAA CGGCGGTTGTGGTGGTGGTGGTGACGAGTTTGGTGACTTTTCTGAGGGGAATTTGTTGGACAACATCAACTTTGACGACC TCTTCACTGGCATCAGCGTTGACAGAGATGCCTTGCCAGATTTGGAGGTGTACCCGGAGATGTTCGCCGAGTTCTCCCTC AGTGGCGGGGAGGATTCGGAGATGAACTCGTCGGTGGAAAACAGCAAAACTCATGATAATGACGACAAGAATTTAAAGAA ATGTGATGAAGATAAAACAACTTCTTCGAGTTCAGCAGGTTGTGGGCGAGGGGAGGAGATAGTGAGCAAAAGGGATGAAT CTATGGTGGTGAATCCATCACCAAAGGATGGTGATGGAAAAGGAAGAAAATCATCAGCTCAAACAAAGAATAATCTTCAA GGGAAGAGAAAAGTTAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGA TAAGGCTGTGCCTTCAAGGATTCGGGAGATTATGGGAATCGATTGTCTCACTCGCCATAACATTGCCAGCCATCTTCAAA AATACAGATCCCATAGAAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGTTGGAATCAAAGAAGACAAATGTATGGT GTAGCCGGAGGAGTGAAGAGAGAGGTGAGTCCTTGGTTGGCACCCACAATTGGTTTCCCTCCCATGACACCTCCTCCAAT GCACCATTTCAGACCCTTACACGTATGGGGGCATCCATCTACGGACCAGTCCTTCATGAACATGTGGCCTAAACATCCAC CACATTCACGGCCATCGCCACCACTGCCGCTCCCATGGGTACCGACGGCCACTTCCCCAGCACCCCAAGACCCTAAGTTT TGGCACGCTCAACACCAACAGACTCCAAACGCTCCAATCCCAGGAACAGCTTGCTTCCCACAACCTCTGACAGCAGCGAA ATTTGGATGTCCGCCGGTTCCCGGAATCCCACCGCCGCTGCATGCCGTATACAAAACAGATGTCCGCCGCCACCGCCGCG TCCCTGCTCCTGCTGGACCCATCTTGAACTTACATCCGTCAAAGGAGAGCATAGATGCAGCAATTGGAGATGTTTTATCA AAACCATGGCTGCCGCTACCACTTGGACTCAAGGCTCCAGCGCTTGACAGTGTGATTGGTGAATTGCAGAGACAAGGAGT TTCCAACATTCCACCCTCTTGTGAAGGTCACTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0451100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLVVSPLRSNKDENQEEMESFSFGISNGGCGGGGDEFGDFSEGNLLDNINFDDLFTGISVDRDALPDLEVYPEMFAEFSL SGGEDSEMNSSVENSKTHDNDDKNLKKCDEDKTTSSSSAGCGRGEEIVSKRDESMVVNPSPKDGDGKGRKSSAQTKNNLQ GKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRIREIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQMYG VAGGVKREVSPWLAPTIGFPPMTPPPMHHFRPLHVWGHPSTDQSFMNMWPKHPPHSRPSPPLPLPWVPTATSPAPQDPKF WHAQHQQTPNAPIPGTACFPQPLTAAKFGCPPVPGIPPPLHAVYKTDVRRHRRVPAPAGPILNLHPSKESIDAAIGDVLS KPWLPLPLGLKAPALDSVIGELQRQGVSNIPPSCEGH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31312
1 434 434 3.6E-190 –
PANTHER
PTHR31312:SF8
1 434 434 3.6E-190 –
MobiDBLite
mobidb-lite
81 163 83 - –
MobiDBLite
mobidb-lite
91 113 23 - –
MobiDBLite
mobidb-lite
125 150 26 - –
Gene3D
G3DSA:1.10.10.60
161 222 62 8.0E-26 –
ProSiteProfiles
PS51294
161 220 60 17.758
IPR017930
SUPERFAMILY
SSF46689
162 221 60 1.16E-17
IPR009057
TIGRFAM
TIGR01557
164 218 55 1.8E-26
IPR006447
Pfam
PF00249
167 216 50 3.1E-7
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0451100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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