Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0452400 |
| Transcript ID | LotjaGi3g1v0452400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat protein kinase family protein; TAIR: AT4G28380.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1; TrEMBL-Plants: tr|A0A072ULP2|A0A072ULP2_MEDTR LRR/extensin; Found in the gene: LotjaGi3g1v0452400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86587040..86589610) extracted from Lotus japonicus Gifu genome v1.2.
AATTTGCCATAACCTCTCACAAAGCAATGTCATCAGCTTCATCTTCTTATTCCTTCACCACTTGTGTGCTATTCCTCTTT GTTCTTCTTATGTCTTGTTTCATGAACAACCTTAGTGCAAAGCACCAGCACCTGCATAAGCACCAGATCAGGCCCAAGCA CACCCATAACCCTCCATTAAACCCGAGGCTCTACCGTGCTTTTCTTGCCCTCCAAGCATGGAAGCATGTGATCTACTCAG ACCCAAAGAACCACACTGCTAATTGGGTAGGTCCTTCAGTTTGCAACTACACTGGTATCTACTGTGCTCCATCTGTTGAT GACCCTAAAGTAACAGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATTGCAGGTAGGGACGGAACTATATGTAGGAA AATGGTTCAATCGCCTCCAAGAGAAAAAAACTTCCTTAAAAGAATAACATTAAATGTTGTATTTGCCTCTCTAAAAGAAC TATATGTTAACTTTGCTTAATGTTTTAAATTTTTGCCCACTAACTTTCTTCTGATTCCGTCTGTGATTGCAGGGTTCCTA CCTTATGAAATAGGCCTGCTCTCTGACCTTGCACTCCTTCACCTCAATAGCAATCGCTTCTGCGGCATTGTTCCAGAGAC CTTGAGCAACCTTACTCTACTCTATGAGCTTGATCTTAGCAACAACAGATTTGTTGGACCCTTTCCTTCAGTTGTGCTTC GCCTTCCTTCCCTAAAATTTCTTGACATCCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAGCTTTTCAACAAATCT TTTGATGCTGTCTTTGTTAATAACAACCGCTTCACCAGTTCTATTCCGCGAAATTTAGGCCAAAGCAAAGCTTCTGTTTT GGTCTTTGCTAACAACAAATTTGGAGGCTGCCTGCCAGAGAGCATAGTAAACTTCGCTGATACTTTGGAGGAACTTGTCC TCATCAATACCAGCATATCAGGTTGTCTACCACAGCAAGTTGGATTTCTCTACAAACTGAGAGTGTTTGATGTGAGTTTC AACAACATTGTTGGCCCCATACCTTACAGCCTTGCAGGGTTATCTCATTTGGAACAGCTAAATTTGGGCCACAACATGAT GAGTGGCATAGTCCCTATGGGAGTTTGTGACTTGCCAGACTTGGCTAACTTCACCTTTTCTTATAACTTCTTCTGTGAGG AAGAGGGTATTTGTCAGAATTTGACATCAAAACGGATAGTGTTTGATGATCGCCGGAACTGTTTGCCAGAGAAGCCTCTA CAGAGGAGCGAAAAGGAATGCAGTGCCCAACTTGAACACCCAGTTGATTGCTTTGAGCTTTGTTGTCCTGTTGGGGGTTC TGGGAACAATGTCACTGCTGGTTCAGTGGCTATTCCACCTGCTGCAGTTCCAGCTGCAATGCCTGTTTCTGCACCTGTTC TTGCACCAAGCTACCCTTGATCAAGCATAATGTGTTGATATAAATAGGCAAAATAAAGTCCAAAATTTGAGTTAGCGAAT CACCTTGTATATACCTTGTTTTCAAAGTTGTGTGCTAATCCATGTGTGTGTGTGTGTGTGTGTTTGGTGTTGTATCATGT GTCTTGTTTTTGCAATGTGTTATATCTGACAGGAAGTGAGTAAGTTCACATAATCTCTTGTGCTTTGTTGGAGTACTAGA TTTTTAGGGTGAAACCATAAGGAGGCCATTCACCTTTTATGATGGATTGGCATGTTAACAAGCTGGAGATGAAGACCCCG ATTTTAGTATTTAACATAGTAAATTTAACGGTAATAACCACCAAAGGATCCTGACCTCAGATTTGAACATAGCTAGTTGA TATATTCACTTATTTACACTCTAAACAATATATCAAGGTTTCAAACAGCTAAGAACCCTCACCACAGGATTGCTATTAGC AAATTATCAAGGTTTTAATACCGAAACACCCTGACCCTAGCTTAGCTAACCAATTCAATCATTTACATTCCCATGATAAA AATTATAATATCCAAGCTTGAAGGGAGAAAAATCGCATTTCAACCAAACATGAGCAATCAAACAATGGTCTAAATCATTT CTCTAACCAAACGGTGGTCTCATACTGCACCGTTATAAGCTCATCACAACTAAAATTCATGTTCGCAAAATTATGATTTC TAAATATCAAGGCCCTAAATTCCGGAAAACATCAACAAATAGCCTTTTGATCCAAAATTACTCTAATAATCTAATCACAA GCACAATTATCCCAGATAAAGTTGTCGTCATCGTTTAGCCGCCGCCAGAACCGTACTTCTTTCCAAACATGATGAGCTGC AGCTTGTCATACCCGGCAAGCACACCAGCACCAGCAACAGCACGTAATATGTTTGCACCAGCACCTTTGAAGAGTGACTT AGTACCCTCCTTTGCAACTATTGTTTGGAATGCATGCAAAGAGCTCTTGTACTTCACAGCTTCTCCAGAAGTCATCATCA TCCTTCTACGGACAGTGTCAATGGGATAAGAAGCCAAACCAGCACCAATAGTGATTCCCCATCCCAAAAGGAAACTAGCA AAGAAACTTTC
CDS sequence (LotjaGi3g1v0452400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCAGCTTCATCTTCTTATTCCTTCACCACTTGTGTGCTATTCCTCTTTGTTCTTCTTATGTCTTGTTTCATGAA CAACCTTAGTGCAAAGCACCAGCACCTGCATAAGCACCAGATCAGGCCCAAGCACACCCATAACCCTCCATTAAACCCGA GGCTCTACCGTGCTTTTCTTGCCCTCCAAGCATGGAAGCATGTGATCTACTCAGACCCAAAGAACCACACTGCTAATTGG GTAGGTCCTTCAGTTTGCAACTACACTGGTATCTACTGTGCTCCATCTGTTGATGACCCTAAAGTAACAGTTGTGGCTGG CATTGACCTTAACTTTGGAGACATTGCAGGGTTCCTACCTTATGAAATAGGCCTGCTCTCTGACCTTGCACTCCTTCACC TCAATAGCAATCGCTTCTGCGGCATTGTTCCAGAGACCTTGAGCAACCTTACTCTACTCTATGAGCTTGATCTTAGCAAC AACAGATTTGTTGGACCCTTTCCTTCAGTTGTGCTTCGCCTTCCTTCCCTAAAATTTCTTGACATCCGCTACAATGAATT TGAAGGGCCATTGCCTCCTCAGCTTTTCAACAAATCTTTTGATGCTGTCTTTGTTAATAACAACCGCTTCACCAGTTCTA TTCCGCGAAATTTAGGCCAAAGCAAAGCTTCTGTTTTGGTCTTTGCTAACAACAAATTTGGAGGCTGCCTGCCAGAGAGC ATAGTAAACTTCGCTGATACTTTGGAGGAACTTGTCCTCATCAATACCAGCATATCAGGTTGTCTACCACAGCAAGTTGG ATTTCTCTACAAACTGAGAGTGTTTGATGTGAGTTTCAACAACATTGTTGGCCCCATACCTTACAGCCTTGCAGGGTTAT CTCATTTGGAACAGCTAAATTTGGGCCACAACATGATGAGTGGCATAGTCCCTATGGGAGTTTGTGACTTGCCAGACTTG GCTAACTTCACCTTTTCTTATAACTTCTTCTGTGAGGAAGAGGGTATTTGTCAGAATTTGACATCAAAACGGATAGTGTT TGATGATCGCCGGAACTGTTTGCCAGAGAAGCCTCTACAGAGGAGCGAAAAGGAATGCAGTGCCCAACTTGAACACCCAG TTGATTGCTTTGAGCTTTGTTGTCCTGTTGGGGGTTCTGGGAACAATGTCACTGCTGGTTCAGTGGCTATTCCACCTGCT GCAGTTCCAGCTGCAATGCCTGTTTCTGCACCTGTTCTTGCACCAAGCTACCCTTGA
Protein sequence (LotjaGi3g1v0452400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSASSSYSFTTCVLFLFVLLMSCFMNNLSAKHQHLHKHQIRPKHTHNPPLNPRLYRAFLALQAWKHVIYSDPKNHTANW VGPSVCNYTGIYCAPSVDDPKVTVVAGIDLNFGDIAGFLPYEIGLLSDLALLHLNSNRFCGIVPETLSNLTLLYELDLSN NRFVGPFPSVVLRLPSLKFLDIRYNEFEGPLPPQLFNKSFDAVFVNNNRFTSSIPRNLGQSKASVLVFANNKFGGCLPES IVNFADTLEELVLINTSISGCLPQQVGFLYKLRVFDVSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCDLPDL ANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSEKECSAQLEHPVDCFELCCPVGGSGNNVTAGSVAIPPA AVPAAMPVSAPVLAPSYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| PANTHER | 2 | 417 | 416 | 1.1E-220 | – | |
| PANTHER | 2 | 417 | 416 | 1.1E-220 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 31 | 10 | - | – | |
| Phobius | 32 | 418 | 387 | - | – | |
| Gene3D | 58 | 222 | 165 | 1.7E-31 | ||
| SUPERFAMILY | 59 | 345 | 287 | 1.19E-49 | – | |
| Pfam | 129 | 186 | 58 | 7.5E-7 | ||
| Gene3D | 223 | 371 | 149 | 3.7E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0452400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…