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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0459900 |
| Transcript ID | LotjaGi3g1v0459900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT2G17690.1 ascorbic acid mannose pathway regulator, putative (DUF295); Swiss-Prot: sp|Q3EBY8|FB111_ARATH F-box protein At2g17690; TrEMBL-Plants: tr|A0A1J7HDQ6|A0A1J7HDQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0459900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87457528..87458816) extracted from Lotus japonicus Gifu genome v1.2.
CACAAGAGTACGTGAATTCACAGATATCTCACCCAGCTTCTGCAATGGCTCCCCTCACTTTGCCCTATCTGATCCTTCCC TCCGATTTCGTTGAAGCTGAAGATGGCACATACACAACTGATCGTATCATATTCAACGTGTCGGAGAACAAGCTCTTCAA GTGGACCAACATGTTCAAGGAACATGAAGCTGGTGCCTGGTGTGCCGGTTCCTCTCATGGATGGCTGTTCATGTTGGACA CCAGAGGTTGTCCTTTTCTTCTGAACCCATCTTCCTCCAAATGCTTTTATTTGGCACCATTTTCTAAGGCATTCATGGAA AGTTCTGCTGGAATCACACACTCTTGCTTCGTCGAAAACTCGCTCAAAACATTCGTGACTAAAGTAGCACTGATGTGCTC TCCCTCTCCATCGCAGCATACAGTCGCGATATTGTTCAGTTACCCAGGCAAGCTGGCCTTCTGTATCAAACCTTCAACAT GGGTTGAACTCACTGGTGGTAAGGGCAGTTACCTTGACATTGTGTTTCAGGACACCTATCTTTATGCCCTGACTGAAGAT GGAACGGTTGAAATCTGGAATTTTCTTCAACAAGTTCCAACAATGGTTGCAGATTTCAAACCGACCATGGATAGCAATGA TGAAGAAGAGGGAGAGTTTTTGGGAGACGGGTTTTCATGGAAAATGTATTTGGTGATATCGGAAGGAGAGCTGTTGCTGG TGAAAAGGTTTCTTGGAGATTTTGTCAACGCCGCTGGTGAAGTCGTGTATGAAGGGTACCAGTCACCAGATGGCGGTGAT GAAATCTGCCCATATAAAACCAAGGACTTTGTGGTGTATAAGCTTGACCCACTTTCTGAAAACAAGTGGGAGAAGAAGGG TTCTTTGGGTGATCGAGTTCTGTTTCTTGGTACTAATGAGTCTGTGTCGAGGTCTGCCAATGAGCTTCAAGGATGTGAAG CCAACTCGATTTACTTCACAGATGACAGGTGGGAAGAGATGAATGGGGACTACTCATATGGTGGGCATGATTGGGGTGTT TTCAGCCTTCAAGATAAAATTTTCAAGACCCTTGCTGAGTGCCCAAATAAGTTGGATCCTCCACCTGTTTGGATTGTTTA ACTATCTGAATTGCATGTATCAAATTGATGGGATGCTGGATTGTCGCCTTCTTTTGTTTTTCTTATTGTCATCCCATTGC CATTGTAAGGGGTAATCATTTACCTGATGTATCTGCGCTTGAAATTGATTTTGTGTACTAGATTGAGATACAAATTGGCT AAATAAAAT
CDS sequence (LotjaGi3g1v0459900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCCCTCACTTTGCCCTATCTGATCCTTCCCTCCGATTTCGTTGAAGCTGAAGATGGCACATACACAACTGATCG TATCATATTCAACGTGTCGGAGAACAAGCTCTTCAAGTGGACCAACATGTTCAAGGAACATGAAGCTGGTGCCTGGTGTG CCGGTTCCTCTCATGGATGGCTGTTCATGTTGGACACCAGAGGTTGTCCTTTTCTTCTGAACCCATCTTCCTCCAAATGC TTTTATTTGGCACCATTTTCTAAGGCATTCATGGAAAGTTCTGCTGGAATCACACACTCTTGCTTCGTCGAAAACTCGCT CAAAACATTCGTGACTAAAGTAGCACTGATGTGCTCTCCCTCTCCATCGCAGCATACAGTCGCGATATTGTTCAGTTACC CAGGCAAGCTGGCCTTCTGTATCAAACCTTCAACATGGGTTGAACTCACTGGTGGTAAGGGCAGTTACCTTGACATTGTG TTTCAGGACACCTATCTTTATGCCCTGACTGAAGATGGAACGGTTGAAATCTGGAATTTTCTTCAACAAGTTCCAACAAT GGTTGCAGATTTCAAACCGACCATGGATAGCAATGATGAAGAAGAGGGAGAGTTTTTGGGAGACGGGTTTTCATGGAAAA TGTATTTGGTGATATCGGAAGGAGAGCTGTTGCTGGTGAAAAGGTTTCTTGGAGATTTTGTCAACGCCGCTGGTGAAGTC GTGTATGAAGGGTACCAGTCACCAGATGGCGGTGATGAAATCTGCCCATATAAAACCAAGGACTTTGTGGTGTATAAGCT TGACCCACTTTCTGAAAACAAGTGGGAGAAGAAGGGTTCTTTGGGTGATCGAGTTCTGTTTCTTGGTACTAATGAGTCTG TGTCGAGGTCTGCCAATGAGCTTCAAGGATGTGAAGCCAACTCGATTTACTTCACAGATGACAGGTGGGAAGAGATGAAT GGGGACTACTCATATGGTGGGCATGATTGGGGTGTTTTCAGCCTTCAAGATAAAATTTTCAAGACCCTTGCTGAGTGCCC AAATAAGTTGGATCCTCCACCTGTTTGGATTGTTTAA
Protein sequence (LotjaGi3g1v0459900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPLTLPYLILPSDFVEAEDGTYTTDRIIFNVSENKLFKWTNMFKEHEAGAWCAGSSHGWLFMLDTRGCPFLLNPSSSKC FYLAPFSKAFMESSAGITHSCFVENSLKTFVTKVALMCSPSPSQHTVAILFSYPGKLAFCIKPSTWVELTGGKGSYLDIV FQDTYLYALTEDGTVEIWNFLQQVPTMVADFKPTMDSNDEEEGEFLGDGFSWKMYLVISEGELLLVKRFLGDFVNAAGEV VYEGYQSPDGGDEICPYKTKDFVVYKLDPLSENKWEKKGSLGDRVLFLGTNESVSRSANELQGCEANSIYFTDDRWEEMN GDYSYGGHDWGVFSLQDKIFKTLAECPNKLDPPPVWIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| PANTHER | 5 | 358 | 354 | 3.7E-59 | – | |
| PANTHER | 5 | 358 | 354 | 3.7E-59 | – | |
| Phobius | 12 | 18 | 7 | - | – | |
| Phobius | 19 | 358 | 340 | - | – | |
| SUPERFAMILY | 20 | 190 | 171 | 2.48E-5 | – | |
| ProSitePatterns | 166 | 180 | 15 | - | ||
| Pfam | 279 | 335 | 57 | 1.4E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0459900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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