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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0460400 |
| Transcript ID | LotjaGi3g1v0460400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q9SJX8|MYB14_ARATH Transcription factor MYB14; TrEMBL-Plants: tr|K7KY78|K7KY78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0460400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87544136..87546833) extracted from Lotus japonicus Gifu genome v1.2.
ACTCTCACTCACTTTGGGTCTGAGTCGTCCCACACGGCTTCTTGCTTCTCGCAAAGATGGCAAGAACACCTTCGTGTGAC AAAAGTGGAATGAGGAAAGGAACTTGGACTGCAGAAGAAGATAGAAAATTAATTGCTTATGTTACTAGGTATGGTTGCTG GAATTGGCGCCAACTCCCCAAGTTTGCAGGTAATTTAACTTCAAAATTGAAATCTTAGTTGGATCATTATCATAATTAAG CTAATTAGTGATTATTGATTAAAGTCAAGAGCTAATATTGGTGCATTGGTGTAATTTCTATACAGGTCTTGCAAGGTGTG GGAAGAGTTGCAGGTTGAGGTGGTTGAATTATCTAAGGCCTAATATTAAAAGAGGGAACTTCACTCAAGAAGAAGAAGAT TGCATCATCAGAATGCTCAAAAAGCTAGGCACTAGGTATGATCATATCCTACATATTGCAAGCTAGTTAGCTTCTCTCCC CAATGTTTGCATTTTGCACATCTTTCCAAATATTATGTAGTGATTTCTTATCTCACTAAAAAAATCTTGAAATTTTAATT AAAAATTATGAGTGAGACAGTTATAAATTTACATGGCGATTTTTAATTTATATGTACAAATTTTATTTTTTTAATGGAGT CTGAGACTCATTTTAGAGATAAAAAATTTATTGGATCAAAATCTTCAATCCCTAAATAATGTTGCAATTTCTTATCCCAC CAATAAAATCTTGACATGTAATTGAAGAAGTCTGATCAAAATCACTACAATAGTGTTGAGAGCAAGAGGGACGAGGAGCT TCGCGGTGGCATTGAGTGTAGTTCTAGAGATCCATTGTTGGTCCCTAGGAGGGGTTCCTGTAATGACACTCAAATATCTA AGTTAGAGGTCAGGGAAGAAAAAGATGAAGTTGTATCAATTCTAGAAAATACTATATGTGTCATAGTCTTCTTAGGACTT ACCTTTTACGTGTTTGCATCGATTGGAGAAATCAGAGATGTAATGAGTGTTGGGCACGACTTCAAAGGTCGATTGAAGGG TCTACATAGGAGCGTACATGTTGTTTGCTAGAGACTTTAGATATAGACTTCTGATGGAATGACACAAACGTCCTCGATTT TAAGCTCAAAGGTGGAGTTGCCATGATCAGAAACCAGTATGATCAAGATGTGATGGTTTGTGGCGATCGGTTGTGGGCCC GGTCAAAAGGATTGTCGGAACATTAACCTCCACCTAGCTCTAGCATTTGAGAAAGGACGCTGAGAGATAAAGAGTGTTGA GTTGGGAGTTCATTCACGGAACATTATGCCAATTGAAATTAAAAGACATGAGTGAAACAGTTATATACTTACATAATGAT TGGTGTAACAGAGGATTGAGAAACGGGTTTTATAGACAAAAAGTTTCAATCCCAATCTTGAAGGACTATAGTCCATAGGA CTAACCCCCTTTAGAAACATAATTTAATTAAGCATTTCTGGTCATAAACGCTTATTCATAAGCTATTTTAAAAATTCTAT TGAAATAAATTGAAAATAACATATTTTAAAATTTTTATTGAAATAAATTGAAAATAATTATATATAAGCATAAGCTCTTT TTCATAAGCTATCATGAGTAGCTTATGAAAATAAGCTCAAAACAGCTTATGGTAGGTCATAAGCTGTTTGCATAAGCTCT CCCCAAATACTGACATAAGAGCTTATGCTATCAGATAAGCTCAAATAAGTTCTTCTAAACGGGGAAGTATAATCATATTA ATTACAAGTGAAAACCACCCTGCATATTCAAGTAGCATCAATTCAATGGATCTTAGAATTTCACAATTGAAATATTGGTC AATAATCTGAAGACTGTAATGCTAATTTTATCTTTGATCTCTTCATAAGCAGGTGGTCTGTCATTGCGGCTGAGTTGCCA GGAAGAACAGATAACGAAGTGAAGAACCATTGGCACACCACCCTCAAGAGAAGAGTTGAAAAACAAACCTCTAATACTAA TGAAGAAGCCAAAATAATCTCCAACTCAAAAAATGCAGAACCAACAACAGGAAGGGACTTGGTGACCAAAAATGGAATTG GTTCCCTTCAAGTTACTCCTCCACCAGCAACTTCAATCTCAGACAGCATTGGTGCACTGTCCCCGTTCTCATCCTCCAGT GAGTTCTCTTGCACAACTTCAGATCAGAAGTTGGTGTTTGAAGATGATGACTTTGATTTTCTGGATGCATTTACAGAGCA TGTCAATGAAAATTTCTGGTCAGAGCTGCAAATTGATACTAATTATGCTCCTCAAAATCAAGACACTACCGAGATCCTTG ATGCTTGTGCATTGTCTCCCAATCAATCTTTGGTCCTTGAGAATGAATTTGGCAGCCTTCTGGATGCACTTACAGAGCCA GCAATTGATAACTTTTGGGGACAGCCATATGTGACTGACACGTGCTATGTGCCTGAATCTGAATATTACTCTACAATATA TGATGCAGATCTTTGGAGTCAAAGTACTTTGTATGATGAGCATTATAGCTTGTTATAATTATATAATGAATAATTTTACT CCAGTCTTGGTGATTAAATTTTAGCCTCTACACTAGTATCATGTATGTATGATCACTATACATGTGATGTCTTGAATAAT GAATTGTACTTCATACGAGGGCAAGTGTTGAGCTCAGGTTAATAAATGCGATTAAGAG
CDS sequence (LotjaGi3g1v0460400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGAACACCTTCGTGTGACAAAAGTGGAATGAGGAAAGGAACTTGGACTGCAGAAGAAGATAGAAAATTAATTGC TTATGTTACTAGGTATGGTTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCA GGTTGAGGTGGTTGAATTATCTAAGGCCTAATATTAAAAGAGGGAACTTCACTCAAGAAGAAGAAGATTGCATCATCAGA ATGCTCAAAAAGCTAGGCACTAGGTGGTCTGTCATTGCGGCTGAGTTGCCAGGAAGAACAGATAACGAAGTGAAGAACCA TTGGCACACCACCCTCAAGAGAAGAGTTGAAAAACAAACCTCTAATACTAATGAAGAAGCCAAAATAATCTCCAACTCAA AAAATGCAGAACCAACAACAGGAAGGGACTTGGTGACCAAAAATGGAATTGGTTCCCTTCAAGTTACTCCTCCACCAGCA ACTTCAATCTCAGACAGCATTGGTGCACTGTCCCCGTTCTCATCCTCCAGTGAGTTCTCTTGCACAACTTCAGATCAGAA GTTGGTGTTTGAAGATGATGACTTTGATTTTCTGGATGCATTTACAGAGCATGTCAATGAAAATTTCTGGTCAGAGCTGC AAATTGATACTAATTATGCTCCTCAAAATCAAGACACTACCGAGATCCTTGATGCTTGTGCATTGTCTCCCAATCAATCT TTGGTCCTTGAGAATGAATTTGGCAGCCTTCTGGATGCACTTACAGAGCCAGCAATTGATAACTTTTGGGGACAGCCATA TGTGACTGACACGTGCTATGTGCCTGAATCTGAATATTACTCTACAATATATGATGCAGATCTTTGGAGTCAAAGTACTT TGTATGATGAGCATTATAGCTTGTTATAA
Protein sequence (LotjaGi3g1v0460400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTPSCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNFTQEEEDCIIR MLKKLGTRWSVIAAELPGRTDNEVKNHWHTTLKRRVEKQTSNTNEEAKIISNSKNAEPTTGRDLVTKNGIGSLQVTPPPA TSISDSIGALSPFSSSSEFSCTTSDQKLVFEDDDFDFLDAFTEHVNENFWSELQIDTNYAPQNQDTTEILDACALSPNQS LVLENEFGSLLDALTEPAIDNFWGQPYVTDTCYVPESEYYSTIYDADLWSQSTLYDEHYSLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 61 | 53 | 15.103 | ||
| PANTHER | 11 | 198 | 188 | 7.3E-75 | – | |
| PANTHER | 11 | 198 | 188 | 7.3E-75 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.8E-28 | ||
| Gene3D | 12 | 67 | 56 | 3.1E-18 | – | |
| SMART | 13 | 63 | 51 | 1.7E-9 | ||
| Pfam | 14 | 61 | 48 | 1.6E-12 | ||
| CDD | 16 | 61 | 46 | 2.76859E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.365 | ||
| SMART | 66 | 114 | 49 | 9.0E-17 | ||
| Pfam | 67 | 111 | 45 | 3.3E-14 | ||
| Gene3D | 69 | 140 | 72 | 1.0E-19 | – | |
| CDD | 69 | 112 | 44 | 9.73154E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0460400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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