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LotjaGi3g1v0460500.1

Overview

Field Value
Gene ID LotjaGi3g1v0460500
Transcript ID LotjaGi3g1v0460500.1
Lotus japonicus genome version Gifu v1.2
Description MYB family protein; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q9SJX8|MYB14_ARATH Transcription factor MYB14; TrEMBL-Plants: tr|K7KY78|K7KY78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0460500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:87549144..87550734) extracted from Lotus japonicus Gifu genome v1.2.

CTCTATCACACATACATTACACACACTTGCCGAGAAGAAACACATAACACTCTCTGAGTCCCACACCTCTTCTTGCTTCT CACAAAGATGGCTAGAACACCATCCTGTGACAAAAGTGGACTGAGGAAGGGAACATGGACTGCAGAAGAAGATAGGAAGT TAATTGCTTATGTCACTAGATATGGCTGCTGGAACTGGCGCCAACTCCCCAAATTTGCAGGTAATGGAACTTCAAAGTTA AAATTTTAGCTGGATCTCTGTCATAATTAAGCTAATTAGTGAAAACTGATTTAATTATAGCCAAGAGCTAATGTTGCATT GGTTTTTTATGCAGGTCTTGCAAGGTGTGGGAAGAGTTGTAGATTGAGGTGGCTAAATTATCTAAGGCCAGACATCAAAA GAGGGCATTTCACTCAAGAAGAAGAAGAGATCATCATCAGAATGCACAAAAATCTAGGCAATAGGTATTATGATCATATC ACTTATTGCAAGCTAGCTTTTGACCAAAAAAAAAAATTGCAAGCTAGCTTCTACCCGCAACCAAAAATTTACACTTTGCA CTTCATCAATTTATGGGATCAAGATTTTCTGATCTGAAACAAGTCAAACAACGTCTCAATTTCTTATCCCGCCAATGAAA TGTTGACATGTTAATTAAAATTTTATTGGTGGGAGAGAAAATATGACACCTTTTAGAGGCCAAAAACCACCCTCTCTACA TATCCAAATACACTCACTCGAATGCTAATTTGATTTTTCATCTATTGACAAACAGATGGTCTATCATTGCGGCTGAGTTA CCAGGAAGAACAGATAATGAAGTGAAGAACCATTGGCACACCTCCCTCAAGAGGAGAGTTCAACAGAATGAAGAAGCCAA AGTCTCAAACTCAAAAAATGAAGGACCCACTTCAGGGAATGGAATTGGCTCCCTTCAAGTTACTCCTCCAGCAACTTCTC AAATCTCAGACAGCACTGGTGCACTATCTCCATTCTCATCCTCTAGCGAGTTCTCTTGCATAAGTTCAGATCTGAATACT ACTTCTTCCAGCAATGAAAAGTTGGTATTTGAAGATGATTTTGATTTTCTGGATGCATTTGCAGAGCATGTCAATGAAAA GTTCTGGTCAGAGCTTCAAATTGATGCTAATGGTGCTCTTCAAAATCAAGACACTACCCAGATTCTTGATGCTTGTGCAT TATCTCCGAATCAATCGTCCAGCCAAAGTTTGGCTCTTGATAATGCCTTGGGCAACTTTCTGGATGCAAACACAGATCCA ACAATTGATAATTTTTGGGGACAGCCATATGTTACTGACACGTCCTTTGCGGCTGAATCTGAATATTTTTCTATAGGATA CGATGCAGATCTTTGGAGTCAAAGTGATTTGTACGACGAACCTTTTTGCTTATTCTAGTAAATAAATTAAATTACTCCAG GAGCATAAGTAATTTCAGAGTCACGCTTCTGTTGTATATAATATCGTTGTACTTTACATGAGAGTGAGTGCTGATGCCCC TTCATAACAACTCTAGTAGTTTATTGACATGAAGTCTATTTAACAACTCATTTTCACTCGGTTTTCTTTTA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0460500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAGAACACCATCCTGTGACAAAAGTGGACTGAGGAAGGGAACATGGACTGCAGAAGAAGATAGGAAGTTAATTGC TTATGTCACTAGATATGGCTGCTGGAACTGGCGCCAACTCCCCAAATTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGTA GATTGAGGTGGCTAAATTATCTAAGGCCAGACATCAAAAGAGGGCATTTCACTCAAGAAGAAGAAGAGATCATCATCAGA ATGCACAAAAATCTAGGCAATAGATGGTCTATCATTGCGGCTGAGTTACCAGGAAGAACAGATAATGAAGTGAAGAACCA TTGGCACACCTCCCTCAAGAGGAGAGTTCAACAGAATGAAGAAGCCAAAGTCTCAAACTCAAAAAATGAAGGACCCACTT CAGGGAATGGAATTGGCTCCCTTCAAGTTACTCCTCCAGCAACTTCTCAAATCTCAGACAGCACTGGTGCACTATCTCCA TTCTCATCCTCTAGCGAGTTCTCTTGCATAAGTTCAGATCTGAATACTACTTCTTCCAGCAATGAAAAGTTGGTATTTGA AGATGATTTTGATTTTCTGGATGCATTTGCAGAGCATGTCAATGAAAAGTTCTGGTCAGAGCTTCAAATTGATGCTAATG GTGCTCTTCAAAATCAAGACACTACCCAGATTCTTGATGCTTGTGCATTATCTCCGAATCAATCGTCCAGCCAAAGTTTG GCTCTTGATAATGCCTTGGGCAACTTTCTGGATGCAAACACAGATCCAACAATTGATAATTTTTGGGGACAGCCATATGT TACTGACACGTCCTTTGCGGCTGAATCTGAATATTTTTCTATAGGATACGATGCAGATCTTTGGAGTCAAAGTGATTTGT ACGACGAACCTTTTTGCTTATTCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0460500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTPSCDKSGLRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPDIKRGHFTQEEEEIIIR MHKNLGNRWSIIAAELPGRTDNEVKNHWHTSLKRRVQQNEEAKVSNSKNEGPTSGNGIGSLQVTPPATSQISDSTGALSP FSSSSEFSCISSDLNTTSSSNEKLVFEDDFDFLDAFAEHVNEKFWSELQIDANGALQNQDTTQILDACALSPNQSSSQSL ALDNALGNFLDANTDPTIDNFWGQPYVTDTSFAAESEYFSIGYDADLWSQSDLYDEPFCLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51294
9 61 53 16.077
IPR017930
PANTHER
PTHR10641
11 186 176 1.2E-75
IPR015495
PANTHER
PTHR10641:SF541
11 186 176 1.2E-75 –
SUPERFAMILY
SSF46689
11 108 98 4.58E-29
IPR009057
Gene3D
G3DSA:1.10.10.60
11 67 57 2.3E-18 –
SMART
SM00717
13 63 51 1.7E-9
IPR001005
Pfam
PF00249
14 61 48 1.5E-12
IPR001005
CDD
cd00167
16 61 46 1.08741E-9
IPR001005
ProSiteProfiles
PS51294
62 116 55 27.435
IPR017930
SMART
SM00717
66 114 49 1.4E-16
IPR001005
Pfam
PF00249
67 110 44 2.1E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
68 134 67 6.0E-21 –
CDD
cd00167
70 112 43 3.28434E-12
IPR001005
MobiDBLite
mobidb-lite
115 157 43 - –
MobiDBLite
mobidb-lite
122 157 36 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0460500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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