Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0460600 |
Transcript ID | LotjaGi3g1v0460600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | MYB family protein; TAIR: AT1G06180.1 myb domain protein 13; Swiss-Prot: sp|Q9SJX8|MYB14_ARATH Transcription factor MYB14; TrEMBL-Plants: tr|K7KY78|K7KY78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0460600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87573093..87574595) extracted from Lotus japonicus Gifu genome v1.2.
CACTCTCTCCATCACAATTCACAAGACCACTATCTCTCAAGATCACCCTGCAAAATAAACAAATATAATAGTCACTGATC ACTTTGAGTCTGACAAAGATGGCAAGAACACCTTCATGTGACAAAAGTGGGATGAGGAAAGGAACTTGGACTGCAGAGGA AGATAGGAAGTTAACTGCTTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTATTTGAT CTTGATATTCAAAATTGAAATCTTTGTTGGGTGATTGATAGAGAAAATTATGCAAGTTAGTGGTGATTAATTATGTATAG TACTCAAGAGCTCATGGTGCATTGGTTTTCTATACAGGTCTTGCAAGGTGTGGAAAGAGTTGCAGATTGAGGTGGTTGAA TTATCTAAGGCCTAATATCAAAAGAGGGAACTATACTCAAGAAGAAGAGGAGATCATCATCAGAATGCATAAAAAGCTAG GCAATAGGTATGAAAATCACTTTTACATCAGAATGCAAACAAGACTTGAAACATTTAATTTTAGGAATTCTCAATTGAAT TAATCAATTAGTTGAACATGTACTAATTTGACTTTTGATCCTTTTACAAACAGATGGTCTACAATTGCAGCTGAGTTACC AGGAAGAACAGATAATGAAGTGAAGAACCATTGGCATACCAGCCTCAAGAGAAGAGTTCATGAACAGAACGCTACTACCA ATCAAGAAACCAAAGTCTTAAACTCAAAAAATGTAGAATCCACTTCAGGGAGGGACCATGTTTCCAAAAATGGAAGTGCT TCCCTACAAGTTACTTTTCCAGAAACTTCCCAATTCTCAGACAGCACGGGTTCACTACCCCCCTTCTCATCCTCCAGTGA ATTCTCTTGCATAAGTTCAGAGCTGACTACTACTTCTTCCAGCATTGAAAAGTTAGTGTTTGAAGATGATTTTGATTTTC TGGATGCTTTCACAGAGCATGTCAATGAAAATTTCTGGTCAGACTCAGAGAAATTTGATCTAGCTAACATTTCATACACA CCCAATGAAACAGTGATGCAAATTGATACTAATTTTGCTCTTCAGAATCAAGACACTACCCAGATTTTTGATGCTTGTGC ATTATCTCCCAATCAATCATCAAGCGACAGTTTGGTTCTTGATAATGACTTGGGCAGTTTTCTAGATGCAAACACAGACC CAACAATTGATGATTTTTGGAGACAGCCATATGTTACAGACACGTCCTTTGCGGCTGAATCTGAATATTTTTCTACAGTA TACGATGCTGCAGATGATCTTTGGAGTCAAAGTAATTTGTACGATGAACAACATTTTTGCTTATTCTATTTCTAGTGAAT AAATTAAAATTAGTACAAGGTCATCGGTAATTTCAGAGTCACGCTACTGTTGTATATAATTTCTTTAAGTAGCTGTTGTA CTTTACATGAGGATCACGGTGGACTTCAGGTCAAAAAAAGCAGTTTTGGCACATTTATACTTA
CDS sequence (LotjaGi3g1v0460600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGAACACCTTCATGTGACAAAAGTGGGATGAGGAAAGGAACTTGGACTGCAGAGGAAGATAGGAAGTTAACTGC TTATGTCACTAGATATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGAAAGAGTTGCA GATTGAGGTGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTATACTCAAGAAGAAGAGGAGATCATCATCAGA ATGCATAAAAAGCTAGGCAATAGATGGTCTACAATTGCAGCTGAGTTACCAGGAAGAACAGATAATGAAGTGAAGAACCA TTGGCATACCAGCCTCAAGAGAAGAGTTCATGAACAGAACGCTACTACCAATCAAGAAACCAAAGTCTTAAACTCAAAAA ATGTAGAATCCACTTCAGGGAGGGACCATGTTTCCAAAAATGGAAGTGCTTCCCTACAAGTTACTTTTCCAGAAACTTCC CAATTCTCAGACAGCACGGGTTCACTACCCCCCTTCTCATCCTCCAGTGAATTCTCTTGCATAAGTTCAGAGCTGACTAC TACTTCTTCCAGCATTGAAAAGTTAGTGTTTGAAGATGATTTTGATTTTCTGGATGCTTTCACAGAGCATGTCAATGAAA ATTTCTGGTCAGACTCAGAGAAATTTGATCTAGCTAACATTTCATACACACCCAATGAAACAGTGATGCAAATTGATACT AATTTTGCTCTTCAGAATCAAGACACTACCCAGATTTTTGATGCTTGTGCATTATCTCCCAATCAATCATCAAGCGACAG TTTGGTTCTTGATAATGACTTGGGCAGTTTTCTAGATGCAAACACAGACCCAACAATTGATGATTTTTGGAGACAGCCAT ATGTTACAGACACGTCCTTTGCGGCTGAATCTGAATATTTTTCTACAGTATACGATGCTGCAGATGATCTTTGGAGTCAA AGTAATTTGTACGATGAACAACATTTTTGCTTATTCTATTTCTAG
Protein sequence (LotjaGi3g1v0460600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTPSCDKSGMRKGTWTAEEDRKLTAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNYTQEEEEIIIR MHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKRRVHEQNATTNQETKVLNSKNVESTSGRDHVSKNGSASLQVTFPETS QFSDSTGSLPPFSSSSEFSCISSELTTTSSSIEKLVFEDDFDFLDAFTEHVNENFWSDSEKFDLANISYTPNETVMQIDT NFALQNQDTTQIFDACALSPNQSSSDSLVLDNDLGSFLDANTDPTIDDFWRQPYVTDTSFAAESEYFSTVYDAADDLWSQ SNLYDEQHFCLFYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 9 | 61 | 53 | 13.766 | ||
PANTHER | 11 | 205 | 195 | 7.7E-78 | – | |
PANTHER | 11 | 205 | 195 | 7.7E-78 | ||
SUPERFAMILY | 11 | 108 | 98 | 9.77E-29 | ||
Gene3D | 12 | 67 | 56 | 1.2E-17 | – | |
SMART | 13 | 63 | 51 | 9.4E-9 | ||
Pfam | 14 | 61 | 48 | 1.5E-11 | ||
CDD | 16 | 61 | 46 | 9.43643E-9 | ||
ProSiteProfiles | 62 | 116 | 55 | 26.92 | ||
SMART | 66 | 114 | 49 | 5.0E-18 | ||
Pfam | 67 | 110 | 44 | 2.5E-15 | ||
Gene3D | 68 | 141 | 74 | 5.5E-21 | – | |
CDD | 69 | 112 | 44 | 3.09411E-13 | ||
MobiDBLite | 118 | 147 | 30 | - | – | |
MobiDBLite | 122 | 147 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0460600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…