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LotjaGi3g1v0460700.1

Overview

Field Value
Gene ID LotjaGi3g1v0460700
Transcript ID LotjaGi3g1v0460700.1
Lotus japonicus genome version Gifu v1.2
Description MYB family protein; TAIR: AT1G06180.1 myb domain protein 13; Swiss-Prot: sp|Q9SJX8|MYB14_ARATH Transcription factor MYB14; TrEMBL-Plants: tr|A0A151S650|A0A151S650_CAJCA Myb-related protein Myb4; Found in the gene: LotjaGi3g1v0460700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:87585439..87586881) extracted from Lotus japonicus Gifu genome v1.2.

CTCTCCATCAAACTAAACATACAGGACCACTATCTCTCTCGATTACCCTGCTAAAGAAACACATATCACACTCACTACTC ATCAATTTTGAGTCTGATAAAGATGGCAAGAACACCTTCATGTGACAAAAGTGGGATGAGGAAAGGAACATGGACTGCAG AAGAAGATAAGAAGTTAATTGCTTATGTCACCAGGTATGGCTGCTGGAACTGGCGCCAACTCCCCAAGTTTGCAGGTAAT TGATCTTCAAAATTGAAATCTTAGTTGGATCTCCTTCATAATTAAGCTAATTAGTACTGAAGACTGATTAATTATAGTCA AGAACTAATGTTGCATTGGTTTTTTATGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGATTGAGGTGGTTGAATTATCT AAGGCCTAACATCAAAAGAGGGAATTTCACTCAAGAAGAAGAAGAGATCATCATCAGAATGCACAAAAAGCTAGGCAATA GGTATGAAGCCACATTTGAACACAAGAGTTTCAAACAACACTTGGAACATTTTAGGAATTCCCAATTGAATCAATTATTT GAACATGTGCTAATTTTATTTTTGATCCCTTTACTTGCAGATGGTCTACCATAGCAGCTGAGTTACCAGGAAGAACAGAT AGTGAAGTCAAGAACCATTGGCACACCACCCTCAAGAGAACTGTTCATGAACAGAACACTGTCACAAATGAAGAAACCAA AGTCTCAAATTCAAAAAATGAGAGGGACCCTGTTCCCAAAAGTGGAATAGCATCCCTTCTGGTTACTCCTCCACCAGCAA CTTCAATCTCAGGCAGCATTGGTGCACTATCCCCTTTCTCAACCTCTAGCGAGTTCTCATGCACAACTTCAGATCTGACT ACTTCTTCCAGCAGTGAAATGTTGGTGTTTGAAGATGACTTTGATTTTCTGGATGATTTTACAGAGAATGTCAATGAAAA TTTCTGGTCAGACTTAGAACCATATCTGGCTAACATTTCCAACAAACCAAATGAAACAGAGCTGCAAATTGAGACTAATT GTGCTCTTCAAAATCAAGACAATATCCAGATCCTTGATGCTTGTGAATTGTCTCCCAATCAGTCCTCAAGCGAAAATTTG ATCCTTGAGAGTGACTTTGGCTGCTTTCTGGATGAAAACACAGACCGAACACTTGATAATTTCTGGGGACAACCATATGT TACTGACATGTCCTTTGTGCGTGAGTCTGAATATATTTTTATGATGTAGATAAGACTTATTTTCCCTTTCAATAAAACTC AAGTTATACTTTATCCAATCAATGTTTATCTTAATGCTTGCTCCATGAATGCGCGCATGTATGCATGATTTACGTTTAAG GATGTGATCTAAATGGAGAAACTGAATTAATCAAGGATTTAGATGACGAAAGTATGTATAATTCAAGGGATAGTTGAATT TAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0460700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAGAACACCTTCATGTGACAAAAGTGGGATGAGGAAAGGAACATGGACTGCAGAAGAAGATAAGAAGTTAATTGC TTATGTCACCAGGTATGGCTGCTGGAACTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCA GATTGAGGTGGTTGAATTATCTAAGGCCTAACATCAAAAGAGGGAATTTCACTCAAGAAGAAGAAGAGATCATCATCAGA ATGCACAAAAAGCTAGGCAATAGATGGTCTACCATAGCAGCTGAGTTACCAGGAAGAACAGATAGTGAAGTCAAGAACCA TTGGCACACCACCCTCAAGAGAACTGTTCATGAACAGAACACTGTCACAAATGAAGAAACCAAAGTCTCAAATTCAAAAA ATGAGAGGGACCCTGTTCCCAAAAGTGGAATAGCATCCCTTCTGGTTACTCCTCCACCAGCAACTTCAATCTCAGGCAGC ATTGGTGCACTATCCCCTTTCTCAACCTCTAGCGAGTTCTCATGCACAACTTCAGATCTGACTACTTCTTCCAGCAGTGA AATGTTGGTGTTTGAAGATGACTTTGATTTTCTGGATGATTTTACAGAGAATGTCAATGAAAATTTCTGGTCAGACTTAG AACCATATCTGGCTAACATTTCCAACAAACCAAATGAAACAGAGCTGCAAATTGAGACTAATTGTGCTCTTCAAAATCAA GACAATATCCAGATCCTTGATGCTTGTGAATTGTCTCCCAATCAGTCCTCAAGCGAAAATTTGATCCTTGAGAGTGACTT TGGCTGCTTTCTGGATGAAAACACAGACCGAACACTTGATAATTTCTGGGGACAACCATATGTTACTGACATGTCCTTTG TGCGTGAGTCTGAATATATTTTTATGATGTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0460700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTPSCDKSGMRKGTWTAEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNFTQEEEEIIIR MHKKLGNRWSTIAAELPGRTDSEVKNHWHTTLKRTVHEQNTVTNEETKVSNSKNERDPVPKSGIASLLVTPPPATSISGS IGALSPFSTSSEFSCTTSDLTTSSSSEMLVFEDDFDFLDDFTENVNENFWSDLEPYLANISNKPNETELQIETNCALQNQ DNIQILDACELSPNQSSSENLILESDFGCFLDENTDRTLDNFWGQPYVTDMSFVRESEYIFMM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51294
9 61 53 14.563
IPR017930
PANTHER
PTHR10641
11 169 159 1.1E-74
IPR015495
SUPERFAMILY
SSF46689
11 108 98 2.73E-29
IPR009057
PANTHER
PTHR10641:SF541
11 169 159 1.1E-74 –
Gene3D
G3DSA:1.10.10.60
12 67 56 2.1E-18 –
SMART
SM00717
13 63 51 2.0E-9
IPR001005
Pfam
PF00249
14 61 48 4.6E-13
IPR001005
CDD
cd00167
16 61 46 3.03975E-9
IPR001005
ProSiteProfiles
PS51294
62 116 55 27.994
IPR017930
SMART
SM00717
66 114 49 2.7E-18
IPR001005
Pfam
PF00249
67 111 45 2.4E-15
IPR001005
Gene3D
G3DSA:1.10.10.60
68 139 72 2.3E-20 –
CDD
cd00167
69 112 44 3.89515E-13
IPR001005
MobiDBLite
mobidb-lite
117 149 33 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0460700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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