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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0460800 |
| Transcript ID | LotjaGi3g1v0460800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT3G23250.1 myb domain protein 15; Swiss-Prot: sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4; TrEMBL-Plants: tr|K7KY79|K7KY79_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0460800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87592983..87595644) extracted from Lotus japonicus Gifu genome v1.2.
GCGTGATGCACGTTTTGGTTAGAAAACACATATAAATGAGAATATCCAAGGTTTACTAATTCAGTTTCTATACATTCACA ATTACTTTTTCTTCCATTTACTTACTCTTTCTAGCTCTATCTTCTTTTCTTATCATATTAATTATCACACATTTTTCAAT TATCTCTTCTATAATTTCTATCAGAGTGTAAGTGTGAGTGAAATTAGGGTGTGAACAAGTTAATTATTTTCCTTAAGTAG CTAGTCAGCTCTGAGACATCGATGGTGAGAACCCCTTCTTTTGACAAAGATGGACTGAAGAAAGGAACATGGACACCTGA GGAAGACGAGAAGTTGGTTGCTTATGTTACTAGGTATGGCCACTGGAATTGGCGTCTACTCCCCAAGTTTGCAGGTATAT ATAATGCTGCATGTTGAAATTAGTATGTAACTTCTATATATATATATATATATATATATATATATATATATATATATTCA GTCACTCTTATTTTCATGATCATAACCAACTCTGGTGGCCATATTAGACCTATATATGTAAGTGATCCAATGAGAGTTTT ACTGTTTTAAGCATTGGTCTGCAACGCAGCTGCAGCCGCACGCAACTATAAGTATATAACCATGAACAAATTAAGAACCT AACCAAATTAAACAATGTGATTTTCTTTAGTTTTGTGTTGGTATACCATCAATATCATTGGTCTGTTATTTGGTTTTACT TAATTCTCAGGACTTGCAAGGTGTGGGAAGAGTTGCAGACTCAGGTGGCTGAATTACCTAAGGCCAAACCTCAAGAGAGG GAACTATACTCAAGAAGAGGAGGAGACTATTATCAAGCTGTACAAAATGCTGGGTACCAGGTATGAAGCCTTATCCGATC CGAAGCTTTTGCAGCAAACCTATGCCATTGCCATGTGCTAACTGATATCTGTCGCTTTCAAAATAATTTATGATTCATCC TTTACCGTCAGAGACGTATGAGAGATAAATTAGGTATAGAAATGATAGATATATAGTTTCCCAATAATGTTACTTACACA CCTCTCATTTGAGGTGGAAGAGGTGAAATGAAGAGAGAGATAGGAAGAAAAGAAAAAGTAAGAGAGAGAAAGTATGAGAT TTGATAGATGATAAGAGGAAAGAGATAGAAACAAAAAAAGGTGGAAATGAAGTGTTTAAAAAATGAGGTGTGTATATATC ATTGTTGATAGTTTCCTGCACTTAAAATTTTCCCATATGTTACCCCATAAGATTGTACTTACTCTGTTCCTTAACTATTG TCTATAAAAAAAACATACATATTAAAAAATATTAAAAATGAAATTTATTTTTCTAATTTTCCTAAAAATATCATTTCTTT TCGAGATTAATTTCTATGCACCGATAATGTAAAAAGTTTTACACAATCATTCAATCACAACCTTCCATTTTCTATTTTAG ATATTATTAAATTCAAAATTAATTGTCAGTTAACAAAATAAAGGGATGTGATTGATTGATGGTGTAAAACTTATTTACAC CGTCGGTGTATAGAAATTAATCTATTTATTTTCTGATTTTACCATTTAAAATATATATTTCTCTCTTCATTTATTGTTCT TACATTGACATTACTTAAATAGTATGATATTCATTTGAAATTCTAAGTATACAAATATATAGGTACAAATTATATTTTCT TTTGGAAAATTATTTTCATCTAAGTGGACAGTCGGTGGCAAAATGGGTCAACGGTATGTGCGGCGGACCAAATCCTCCAA AAAAATAGTTGGGGGCGGATTAGCCCACTTTTAATATATGGATTGAAAGTTTCAACCCAACCCATATTTGAGTTGGATGG CGGACCGGTAGGTTGACCCACTCAAGAACACGAATCTTAAAATGCAATTAAAGCTTTTCCTTTGCACTGGTAGATGGTCT GCGATTGCTGCTCAGATGCCAGGAAGATCAGATAACGAAATTAAAAATCACTGGCACACCAACCTCAAGAAGCGATACCA ACACAGCTCAATCACAAAATCTCAAGTCTCCAAGCCAAACGACCACTCCCCCGTGCAGGAAACTGCAAACAACATAAATG GTCCTTTCGAAACACTTCAAATCACTCAACTAGCTGATTCATCTTCGCCCGAATCCTCATCCACAAACATGGAGTACACC AATGTTACCAACAATGATGATTATAATCTGGATAGGGAAGTTGAATTTGCCTTTCTGGATTCAGACAGATATGGTGATAT GATCAGTGGAAACTTCTGGTTCGAGCCATATATGCTTGACATTTCCTATGCAAAATCAAGTGAAAACTTTGAGTGCTTTA GCCCAGTCTTTGATGCTGAGCTTTGGAGTTGATACGATGAGTGATATATATATATATATATATATATCTGCTTGGTGAGT GCACTGAAGATGATGTTTTATTTAGAGTTGATACCTTTTTCCTCCAATTATTGACAAAAAATGAATCAAATGTAGGTGGA AAAGGATATGTAATAATTTCTATATACATCCGACATTTGTTTTCTTCTCTTGTGGGGTGGAGTTTCTCTGTTTCTGCAAA CTGTGTGAATCTATTTTCATAATAAAGTTATAGTGATGTGTGTGTATGGTGGGTCACCCTACTATACGTGGATGTGCAAA TGCCAATCGAATTAATGAAGAA
CDS sequence (LotjaGi3g1v0460800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGAACCCCTTCTTTTGACAAAGATGGACTGAAGAAAGGAACATGGACACCTGAGGAAGACGAGAAGTTGGTTGC TTATGTTACTAGGTATGGCCACTGGAATTGGCGTCTACTCCCCAAGTTTGCAGGACTTGCAAGGTGTGGGAAGAGTTGCA GACTCAGGTGGCTGAATTACCTAAGGCCAAACCTCAAGAGAGGGAACTATACTCAAGAAGAGGAGGAGACTATTATCAAG CTGTACAAAATGCTGGGTACCAGATGGTCTGCGATTGCTGCTCAGATGCCAGGAAGATCAGATAACGAAATTAAAAATCA CTGGCACACCAACCTCAAGAAGCGATACCAACACAGCTCAATCACAAAATCTCAAGTCTCCAAGCCAAACGACCACTCCC CCGTGCAGGAAACTGCAAACAACATAAATGGTCCTTTCGAAACACTTCAAATCACTCAACTAGCTGATTCATCTTCGCCC GAATCCTCATCCACAAACATGGAGTACACCAATGTTACCAACAATGATGATTATAATCTGGATAGGGAAGTTGAATTTGC CTTTCTGGATTCAGACAGATATGGTGATATGATCAGTGGAAACTTCTGGTTCGAGCCATATATGCTTGACATTTCCTATG CAAAATCAAGTGAAAACTTTGAGTGCTTTAGCCCAGTCTTTGATGCTGAGCTTTGGAGTTGA
Protein sequence (LotjaGi3g1v0460800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRTPSFDKDGLKKGTWTPEEDEKLVAYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTQEEEETIIK LYKMLGTRWSAIAAQMPGRSDNEIKNHWHTNLKKRYQHSSITKSQVSKPNDHSPVQETANNINGPFETLQITQLADSSSP ESSSTNMEYTNVTNNDDYNLDREVEFAFLDSDRYGDMISGNFWFEPYMLDISYAKSSENFECFSPVFDAELWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 61 | 53 | 17.461 | ||
| SUPERFAMILY | 11 | 108 | 98 | 8.11E-30 | ||
| PANTHER | 11 | 176 | 166 | 5.9E-75 | ||
| Gene3D | 11 | 67 | 57 | 6.2E-19 | – | |
| PANTHER | 11 | 176 | 166 | 5.9E-75 | – | |
| SMART | 13 | 63 | 51 | 1.3E-11 | ||
| Pfam | 14 | 61 | 48 | 7.2E-14 | ||
| CDD | 16 | 61 | 46 | 7.92214E-10 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.075 | ||
| SMART | 66 | 114 | 49 | 3.3E-16 | ||
| Pfam | 67 | 111 | 45 | 1.2E-14 | ||
| Gene3D | 68 | 142 | 75 | 1.2E-19 | – | |
| CDD | 69 | 112 | 44 | 5.28774E-11 | ||
| MobiDBLite | 116 | 141 | 26 | - | – | |
| MobiDBLite | 117 | 141 | 25 | - | – | |
| MobiDBLite | 154 | 174 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0460800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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