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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0464700 |
| Transcript ID | LotjaGi3g1v0464700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|I3T3J1|I3T3J1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0464700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88005197..88008729) extracted from Lotus japonicus Gifu genome v1.2.
GAATAAACAAAAAACAAGGCCCCTCTACACAACGGTACACACAGACAGTCACTGGCGCGAAGAGAAAGAGAAAGAGAAAG AGAAAGCCATGGCGGAGACTCTTGATTCCGATGTGGCGATGGTTCCCGCCGGCGAACCTTCAAGCAGCGCCGGCCCTTCT TCCAAGAAGTCCAAACGCTTCGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGGTGAGTCACGACTCACGAG TCCCTCTTCTCTCTTCTTCCCTTCCCAATCCTAAACCCTATTTTTTTGGGATTTTGTTTTTTAATTTTTTGTTTTGTGGT TCTTTGATTGCAGACATTGTCGTTGATAACTGTGCTATCTGCCGCAACCACATCATGGATCTCTGTAATTTTCACTTTCT TCAATTCTTCTCTCTCTATTTGTTGTTTTGAGATTATTCCCCTTTTGAATCTTCATTCACTGATTTTTTTAGGTATAGAG TGCCAAGCTAACCAGGCTAGCCCAACTAGCGAAGAATGCACTGTGGCTTGGGGTATGTATCAAAACCCCCTCATATTTCT TGTTCCTTTTTTACTTTAATCAATATTTTGGTGATTTTGTGTGAATGCCTTTTAGAATATTTTGTTTTCTTGTGCCATCT CTTTTAGGGTTCAAGCTACATCAGTTTGTAGGAATATTATGAAATTTTTGATAAAACTATTGTTAAGAGTGTTTTGCTCG TTTAAGTTGCTAGGAAGTGTCTAGGTAGTTTTTCATTCATAAATTAGGTCCAAATTGTTGGTAAAAAGTGTGAAGTGGGT GTATGATGAAGATTCACCATCTCACGAAAGGGGGTCCGAGCTCCATTATTCGATAATTAAATCACCACGATAGAGTATAG ACAGTCAGGCATATATACCAAGAAAGGAATGGAGAATTCTTCCGTGCAGATAAATTGAGGCTACCCTAATGAAATAGTTG GTGGGAGTACATGGAGATGGGGACAATCTCGTTTTATGAGTTAGGGTAGTACCCCTAGGGTAACATGAAATCAATTCTGC TGCGTTGAGTTTGAGAAAGCCCACACTTATGGGGATATACTGATATATGGTTACATAGTTGTTAGAAGGATGGAGGGTAG GGAAAAATACTTGAGGGCCGAGACGAGCTGCCTAAAGAGCTCATTAGGCGCATTCCACTTTCCTCCAATGAGATGTCTTA TGTTTCAATGGCATTCAGAGAGTTCTACTCTCTAGCTAGAGTACAGTTTGGTTAATTAAATTAATCGTACAACATTGACT AATATTATAATGGCACGCAATAGCCAATGTGTATAGTAAATAATGTGGCATTTGTGTTTAAACCATTGTCTGTGTTGAGA TGAAGATCCCACATCGGCTAGAGATATAGTTAAAGTAGAGCGTATGAAGGTTTTGACAATTGTGACCTCACGAACTAGCG TTTGACTTTTAAGTTAGAGTTAGGTCCAGCTCTGAATTCTAAGATGTTTTGAGAGCCTATCCTAGTTTCGATATTGGGCC ACCCACTGTTGTCTCAAAAAAAAATAGTGGTTTTAGCAATCCTCACCTCATAAGCTAGCTTTTAGGTAGAGTTAGGCCAG GCCTACGTTATGAGCCTGAATGCATTGATTTATAATCATGAGGAAAGGAGCTTTGCATCCACAAATTCTTCCTGGTGCTT TTTTTTTTGCTATTTAGTGCTGTGTATTGGGCTGGTGACTCAATTATCCTGATCTTTAGTTAGAAAGAAGTGTAATTCAA TTTTAGGCTGGGTTGTGAGCTGCACGTAGTCGTGTATTATATTAATGTTGTTTTCCTTTCATGTTATGAAAGACATCCAC TCCTCATTTAATATATTTTACCTTTTTTTCTTTCTCTGTTCAATTATGAAACTGAAGCAAATTCAGTATCTTATGGTTAC TGTACCTCCATATTTCTCTATTATGGTATTTACATTTACGATGTGGTCTCTGCCTCAAATTGATGTCAGTTTTTGGGTTT TTACTTCACGTATCCTTCTTTTTCCAACAGGCAATCCCCCCAGCCCTCTTTCTAGATCAAATTTACATAAAAATCATCCT TGCAGAATATACCTATTCATAACATTTTCACTGGAGAAACATACTAACATATTTTCCACCATATATGGGTTCAATTAGTT TATGATTTGAAAAGGAAATAACATTTTCATTGGGAACCATTATATCAATAATGATCCCTAAGTTCAAAAGTAAACATAAC AACATGCTTTCTCTTCCTTCTCAATCGATCAATCCTGTCCAAAAGGGAGGGACCAAAAGTTTTGGGACCCAAAGATTCTT TCTCCATCCTACTATCTCCCATTCCACCCTTTCCTTAATAACCAAAGAAGGGATGATGTCTAATCAATAAGCATTTTCCT TTTCCCTCCCATGTATTAGTAGTAAAGGAAACAGGGGGTCAATTCTATGATGGACCATTCATTACTGCCCCTATTATAAG TCACTTTTGTGTTGCAAATACATTAGATCATGCTTTTTTTTTTGGTAACTGCAAACATTTTGGTATAGCTAGATCCTTAT TTTGGTTCCGTTGGAATAAGATATAATGCTTACTGCTTAGTTTGTTTTCCATGAGTGAAATTATTATGCTATTTCAGTTT AGGATATATTCTTTTGAACAATCAGGACTTCTAAGAATAGTTTGTAGGTTATTCTCTATTACGAAGGGTTCTTTAGCTAG TACTATTCGGCTTAGCATATCCAGGATTACTCAAACTTTTGCTTGCTCTGGCTTACATCTTATACAGGGGTTTGTAACCA TGCTTTTCACTTCCATTGCATTAGTCGATGGCTCAAGACCCGCCAAGTATGTCCTCTAGGTATGCATGCTCAAATCCTTT CACATTTCCTTTTGTGTTGGAGACTATAAGGAATAAGAAGCATACTTCTTACTGACCTTGTTTTTCTGTGTTGGTACAGA TAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAGAACTTTGATGCTGTGGAGCTCCTTTGATATTTGGGCCTTCTAT CCGAGCTCTCAAATATTGACAGTTCTGTTTGTTATTTTCTTTTCATTGTCTGCTGGATTTATTATCTTCAAGAAAGCAGA TTTTCTGATGGATTTTGGTATACACAGACAGTAGCATGTAAAGTTTTATTTTAATATTGTCATTGAACCTTATGTTGATA TTTGGATATACTTCATTGTTTCTTTAAGAGCATCCTTATGTTTCTCGGACAAAGCCTACGTTTCTGGTTTCTGATATGCT CGATGGCTTCCTCATGGAAGATTAAGTTGCTAGGAATTCTGAATTCGATGAACAAGTTCTGCAAATTGAGCTATTATTTA AGTTTGGGCCCGTATCTACACCTTCTTTGAAAGTGCTTGCATTTTCTTATGCTGTCACACATAAGAGTTGATGCTGGATT CCCTAAGGCATCTGAGTCTGATATCACCATGGTTTTTACTAAAATATAATCCCATTTTTACTGAAACATTTGTTCTTATT CAATAACCAATCC
CDS sequence (LotjaGi3g1v0464700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGACTCTTGATTCCGATGTGGCGATGGTTCCCGCCGGCGAACCTTCAAGCAGCGCCGGCCCTTCTTCCAAGAA GTCCAAACGCTTCGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATTGTCGTTGATAACTGTGCTATCT GCCGCAACCACATCATGGATCTCTGTATAGAGTGCCAAGCTAACCAGGCTAGCCCAACTAGCGAAGAATGCACTGTGGCT TGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTCGATGGCTCAAGACCCGCCAAGTATGTCCTCTAGATAA CAGTGAGTGGGAGTTTCAGAAATATGGCCACTAG
Protein sequence (LotjaGi3g1v0464700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETLDSDVAMVPAGEPSSSAGPSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVA WGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 4 | 117 | 114 | 7.1E-72 | – | |
| PANTHER | 4 | 117 | 114 | 7.1E-72 | – | |
| Gene3D | 18 | 117 | 100 | 7.3E-35 | ||
| SUPERFAMILY | 29 | 114 | 86 | 1.45E-39 | – | |
| CDD | 49 | 110 | 62 | 2.2365E-44 | – | |
| Pfam | 49 | 107 | 59 | 4.8E-25 | ||
| ProSiteProfiles | 62 | 107 | 46 | 9.48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0464700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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