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PF12678

Source: Pfam

Description

RING-H2 zinc finger domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj0g3v0042719.1
– PREDICTED: RING-box protein 1a-like [Glycine max] gi|356517622|ref|XP_003527486.1|
Domains
11
Lj0g3v0042739.1
–
Domains
13
Lj0g3v0262469.1
– PREDICTED: RING-box protein 1a-like [Glycine max] gi|356517622|ref|XP_003527486.1|
Domains
11
Lj1g3v3063880.1
– PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max] gi|356526552|ref|XP_003531881.1|
Domains
12
Lj2g3v1119540.1
– PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max] gi|356526552|ref|XP_003531881.1|
Domains
12
LotjaGi1g1v0261000.1
– RING/U-box superfamily protein, putative; TAIR: AT3G47180.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related; TrEMBL-Plants: tr|G7J4X5|G7J4X5_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi1g1v0261000
Domains
12
LotjaGi1g1v0518600.1
– RING/U-box superfamily protein; TAIR: AT5G15790.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3SB07|I3SB07_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0518600
Domains
11
LotjaGi2g1v0270600.1
– RING/U-box superfamily protein; TAIR: AT5G15790.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3STN7|I3STN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0270600
Domains
11
LotjaGi2g1v0270600.2
– RING/U-box superfamily protein; TAIR: AT5G15790.4 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3STN7|I3STN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0270600
Domains
11
LotjaGi3g1v0190400.1
– RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|C6T2R2|C6T2R2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0190400
Domains
11
LotjaGi3g1v0190400.2
– RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|C6T2R2|C6T2R2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0190400
Domains
11
LotjaGi3g1v0190400.3
– RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|I3T3J1|I3T3J1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0190400
Domains
11
LotjaGi3g1v0464700.1
– RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|I3T3J1|I3T3J1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0464700
Domains
11
LotjaGi3g1v0464700.2
– RING-box protein; TAIR: AT5G20570.1 RING-box 1; Swiss-Prot: sp|Q940X7|RBX1A_ARATH RING-box protein 1a; TrEMBL-Plants: tr|K7M2W2|K7M2W2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0464700
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd16485 CDD 1 7.14