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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0465400 |
| Transcript ID | LotjaGi3g1v0465400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 97; TAIR: AT2G32380.1 Transmembrane protein 97, Putative; Swiss-Prot: sp|Q6DFQ5|TMM97_XENTR Transmembrane protein 97; TrEMBL-Plants: tr|I1LRR4|I1LRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0465400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88084498..88087145) extracted from Lotus japonicus Gifu genome v1.2.
ATATATTGAACTCCTTAAGAAAATATTAATCTATTTTAAGTAAATCATAATTTCTTTTGAATAAAGAAGGATCCATACAA TACAAACCCCCTAAAGTCTAACACATGTGAAATTTTCAATCCTACAAGATCCCACTTTTTCTGCAACCCACCAATCTCTT CTTCCATCTCCCATTCCCAGTTCCACCATTCTCAATCTCACAGAGCCAAAATGGGTTTCGTGTCGAAGCTCGTAGACGCC ATTCTCTTCCTGTTCTTCCTTGTGATAGCAATAGTAGCTCCTCTGTTTGATGCTCAGTCATGTCTCCCTCTCTCTTACTA CCCTGATTTCCTTCTCGACCTTAACAAATGGTACACACAAGAGTATGGTGACTACCTTGTTGTTGACAAACCCCATTTCT TCGTTGGTCTTGTTTGGCATGAGCTTCTCTTCCTATGGCCTCTTTCGCTTCTCAACCTCTATGCCATCTTGTTTTCTAAG CCATGGTTCAACACCACTTGCTTGATCTTTGGTGTCTCTATCTCCACTTCCATGGTATTGTTTCTCTCTTTTGAATGGCT TATGAATGACCCATTTTAGAATAAATATTAATAGGATCTCACATTTCTATGTTTTATGTTTGGATCAAGAAAAGTTGAAG TTTTTAATTTTAATGCATAGCACAATAGTTACTAGCAATCATTATTTTAGCTTCAATAGATTTGTTTACAGGAATGTATT GGTTGTTGTTAGATTCATCCTTGTTCTTTGATCTGTTTGTGCATTGCTAAACATTTTTCATTTGGAGATAAGTAAGGTTT TGAATTGGGGTATGCAATGCAATTGGCTGCAAAGTTTTAGATTTTATTAGTGACTTGTGCAATTTTTCATAACTTCAATG GTCATGATTTAATTGTGAATGTAAAAGCAATTTAAAATTTTGAAGACAAGCTTAGCTGTTAAGATGTACTAGGATAGAAT TGGATGTTATTCTCTTTTGTTATGTTTGCATTTGGTGCTGTTTTTTAGCCCGTTTGGATGAGAACCAAAGAGCATTTATC GGAGCTTATATAGTGTTTTTTCTAATAGATAACCTCCTTAAAATTGCATGATCTAGCTATAAAATTGGGATCGTGCAATT TTGTTGCTTAGATTTAAAATTTAATTATGACATATGGTCAGGGTATATCTGATGGCTTTTCTAAGTTACCATCCTAAGCT TGTTCTCTCTGCTTTTGCTCTGCACATTGACATTTATTTCACAGAAGCTGGAAGTATAGTAGTGTCTATCCTAGCCATTG ATGGTGTTACAAATCACAATAGGAACTTCTTACAGTTTGATCTGTTGGTTGTTGTTAGATTCATCCTCGTTATTTGATGT ATTTGTCCATTGATAAACATTTTTCATTGGAAGATAAGCAAGGTTTATAATTGGGGTATGCACTTGGCTGCAACATTTGG ATTTTAGTGGCTTGTGCAATTTTTCATAATTACAATGATCATCATGATTTAATTCTGATTATGATAGCAGTTTAAAACTT GAAACAAGCCTGGCTGCTAATGCGTACATAGAAATGGACGCTTTTCTCTTTTGTTATGTTTGCATTTGGAGCTGTTAAAA TGATGATCAAGCTTGTTCTCTAAGTGCATGTTTGGAAAATCATTCTACAATTCATTATAAAGTCAAAATCAATTTTACGG AGAAACTTCTAGGTTTCTGTATTGATTATGATGAAAGAGAAGTTGATCCAAGCATGCTATAAACATGATACTGAAACATA TGTGGGGTTGTACAATTTAATAGCTTTGATTTAAAACTTGATCATAACCGGTGATCAAGGTATATCTGAGACTTTTCTAA ATTACCGTCTTAAGCTTGTTTTCTCTACTTATGCTTTGTCCAATAACACTTATTTCACCGGAGTTGGAACTTGGGAGTAT GATAGTTTCCATCCTATAGCCATAGATGGTGTCACAAGTCACAATAGAAACTTTTTTCAGTTTGTATAATCTATCTATGT CTTGCATTTAGTTTACATTTTTTTGGTTATTTGTGGGTTGCAGGTTGCTGTATTATCAGAAATGATAGGTTCCCAAAAGG CATCTGAGAAGCTATTAGCAATGTACTACCCTTTCATGGGTTTGGGTGTTTTAGCTGTTCTGCGAGGCGTGCTTGCACAC TCCTCCAAGTCTGCTTCAGCTATTGGCAAGAGATCTGCAATGGCGAGGAAAAAGCGAGCTTGAAACTGTTAATTGTTGAA TCAAACATGAGAGAGCATGGAACGAGAGCCACACTTTGAGGTGTGACGGGATTGAGTCATGCAAAATTCTAATGTTGACT TTGTATTTGATTCTCTGGGTTTCCATTGGTAACCCATCTGAGAAAAAGTTTTGTATCAAGTAAACTTTAGATTCCATCAT GTTGCACACTTCACCATTGAAGGAATAAATGGTAGCTATTGGATAATAGGTTCCGGTGGTGGGTTAACCTAAATGATTAT TCAAGGTGACCCACTGATTTAGGTGGGTTAACCTAAATGATTATTTTGAAATGCTGCAATTTAAACCCCTTCAACCGCTG AACACTTAGTTTGAGGCTAAACCTCCACTAGGAGAGCTAGCTCCACTAAGATGTGGATGTTCCCTTGAACATGAGCACTT GTGATCAC
CDS sequence (LotjaGi3g1v0465400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCGTGTCGAAGCTCGTAGACGCCATTCTCTTCCTGTTCTTCCTTGTGATAGCAATAGTAGCTCCTCTGTTTGA TGCTCAGTCATGTCTCCCTCTCTCTTACTACCCTGATTTCCTTCTCGACCTTAACAAATGGTACACACAAGAGTATGGTG ACTACCTTGTTGTTGACAAACCCCATTTCTTCGTTGGTCTTGTTTGGCATGAGCTTCTCTTCCTATGGCCTCTTTCGCTT CTCAACCTCTATGCCATCTTGTTTTCTAAGCCATGGTTCAACACCACTTGCTTGATCTTTGGTGTCTCTATCTCCACTTC CATGGTTGCTGTATTATCAGAAATGATAGGTTCCCAAAAGGCATCTGAGAAGCTATTAGCAATGTACTACCCTTTCATGG GTTTGGGTGTTTTAGCTGTTCTGCGAGGCGTGCTTGCACACTCCTCCAAGTCTGCTTCAGCTATTGGCAAGAGATCTGCA ATGGCGAGGAAAAAGCGAGCTTGA
Protein sequence (LotjaGi3g1v0465400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFVSKLVDAILFLFFLVIAIVAPLFDAQSCLPLSYYPDFLLDLNKWYTQEYGDYLVVDKPHFFVGLVWHELLFLWPLSL LNLYAILFSKPWFNTTCLIFGVSISTSMVAVLSEMIGSQKASEKLLAMYYPFMGLGVLAVLRGVLAHSSKSASAIGKRSA MARKKRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 166 | 166 | 2.7E-56 | – | |
| PIRSF | 1 | 158 | 158 | 1.4E-34 | ||
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 166 | 166 | 2.7E-56 | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| ProSiteProfiles | 8 | 140 | 133 | 16.198 | ||
| Pfam | 9 | 144 | 136 | 1.4E-31 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 28 | 7 | - | – | |
| Phobius | 29 | 62 | 34 | - | – | |
| Phobius | 63 | 85 | 23 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 86 | 96 | 11 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 97 | 116 | 20 | - | – | |
| Phobius | 117 | 127 | 11 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 128 | 145 | 18 | - | – | |
| Phobius | 146 | 167 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0465400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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