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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0468300 |
| Transcript ID | LotjaGi3g1v0468300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-type anion channel; TAIR: AT1G62280.1 SLAC1 homologue 1; Swiss-Prot: sp|Q5E930|SLAH1_ARATH S-type anion channel SLAH1; TrEMBL-Plants: tr|A0A1J7HFJ3|A0A1J7HFJ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0468300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88392610..88395013) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAACCCTGCAAGGCTATAAATATTCCACTCTGTTCCCACAATCCGCACAAGAAGTGTACTTGCATTGCACCATCTTC TACCATGGTTGAAATGAGCAACTCTGAGAAACAACCACAAACTCATATAGCATTACCAATAGTTATAGACATTCCAGTCA CCAAAACTCAATCCCATAATCACAACAAGTCTCAAATCCATGTCCAATCTTCTTCAATTCTATCACAAATCCATGCAGGG TATTTCAGAATCAGCTTAGCCCTCTCAAGTCAAGCCTTGTTGTGGAAGGTCCTCATTGAACCAATCGAAGACGCACACGC TCTTAGAAAAATATTTTCATTCATACCCTCCACTGCTTTCACTTTCCTATGGTATCTAGCCTTGTTCACACTAGTCACAC TCTCTTTTCTCTATGTTCTAAGATGTGTGTTTCACTTTGACATGGTGAAAGATGAGTTCTTAAGCCATGTGGGAGTGAAC TACCTCTTTGCTCCATGGATTTCATGTCTACTTTTGCTAGAGTCATCACCATTTGTTCCCTCTAATTCACTTAGCCACAG AGTTCTTTGGTGTGTGTTTGTGACTCCTGTGGTGGTGCTTGATGTGAAGATCTATGGCCAGTGGTTCACAAAGGGGAAGA GGTTTCTGTCGGCGGTCGCGAACCCAACAAGCCAATTGTCTGTGATTGGAAACTTGGTAGGGGCTCGGGTGGCTGCGGAG ATGGGTTGGAAAGAGAGTGCAATTTGCTTGTTTTCTCTTGGGATTTCGCATTACTTGGTGCTTTTTGTGACTCTGTATCA GAGGTTGCCAGGGAATGATAATAGCCTCCCTCCTCTGCTGCGTCCTGTGTTCTTCTTGTTCTTTGCGGCGCCAAGCGTAG CCAGCTTGGCTTGGCGCTCCATTAGTGACGAGTTCGATACCGCTTCGAAGATGCTGTTCTTTCTCTCCTTCTTCCTTTTC ATGTCTCTGGTAATTTTCTTTTCCCTCATAATCAGTTTTGAAACTCAAAAACTCCTCACATAATTTTCTTCTTATAATTA ATTTTGGCCGTAGAATTAATTGTTGAAGAAAGTAAGAGAATGCAATTTTGCCTAGAAGTCTAAGAGAAAGCTACCTAGAA TGCACCTAATGTGATTTCCTAGTAGCCGGTGGATCCAAGTTCACCAAGAAAATATAATGGTAGTACACACAAAACATAAG AACTTCAAAATGATGTCAAATTGCTTGCATTTCATTCCACAGTGGGATCAAAGATCTTGTCTTAGATGTCTCAATTTATT GTTCCATGGATGAAATCTTGATTTGCCGATAATTTAAAAAGACATGAGTGGAGCCGTTACAAATTTGAATGGTAGTATTT GATTAACATGTTAAAAATTTATTGATAAACATGAAATGAAATTGAGATAGCATATGAGATTTTGAGTACAAAATATTCCA ATGGTGCACTGTCGTTCTTGAGTTGTTTTGTTCATCATTTGGAAGTATGTAAGTTGAAGTCCACTAGCTAGTAAAGTGGT CCACTATTTAATAAGTTGACTATGACCCTTGTTTCAATATAGTAGATAACTTTTACAATTTCACGTCACTTTGTTTATCT GAAAATGATAATCTTACAAGTTCTATTTGGTGGTCCCTTCTGGTGTTCATGCCAACTCAGAACTCTTGTATGTGTGGTCA CGAACTTAGCCATTTATAGTTCACTGTACTTGGACTATATAGTGATAGATAGCTAAAATTGTTCAACTTTTCCTTTTGAA AAAAAAAAGTTTATAAGTGCTTACTTTCTTTTGTATTTTGGGACAATCAGGTTTCAAGGCCTCTGCTATTTAAGAAGTCC ATGAAGAAATTCAATGTGGCATGGTGGGCTTATTCTTTTCCTCTGACGGCTTTGGCGCTTGCTTCAGCAGAATATGCACA TCAAGTTAAGGGACTCACTGCTCATGCTGTTATGTTGGTCTTATCATTGATCTCAGTTTTGGTGTCTGTGGTTTTAATGA TTGTCACTGCTCTCAACACTAGCATACCCTTACCAGCTAACAACCTTGACTCAGATCAGAAAAGCAATTGCACAGCAACG TGATTAATATTAGTGTGTGTTTAGATACCAGCTTCACGTGAATGAACTTTCATTGTAATTTATAAAAATAGTTTCATTCA CTTTTTAGTTTTGAAGTAAAGTAACTGAACGTACTCTTAGTTATTAACCTGAAAGATCAGCCTTTGTAATTGTAAATCAA ATATAAAATGTCTTCATAATTTTAATGTATTCACCCTTGCTTTTACTTTTTATGAATTTGAGTTACGTGTATTTACGACA ATCCTGCATTTATGCAGTCACAGTCTAAACTGGTTAATTAAGATCAGTCAGCTCATATATTTTATTAAGATCGGACGATA AATT
CDS sequence (LotjaGi3g1v0468300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGAAATGAGCAACTCTGAGAAACAACCACAAACTCATATAGCATTACCAATAGTTATAGACATTCCAGTCACCAA AACTCAATCCCATAATCACAACAAGTCTCAAATCCATGTCCAATCTTCTTCAATTCTATCACAAATCCATGCAGGGTATT TCAGAATCAGCTTAGCCCTCTCAAGTCAAGCCTTGTTGTGGAAGGTCCTCATTGAACCAATCGAAGACGCACACGCTCTT AGAAAAATATTTTCATTCATACCCTCCACTGCTTTCACTTTCCTATGGTATCTAGCCTTGTTCACACTAGTCACACTCTC TTTTCTCTATGTTCTAAGATGTGTGTTTCACTTTGACATGGTGAAAGATGAGTTCTTAAGCCATGTGGGAGTGAACTACC TCTTTGCTCCATGGATTTCATGTCTACTTTTGCTAGAGTCATCACCATTTGTTCCCTCTAATTCACTTAGCCACAGAGTT CTTTGGTGTGTGTTTGTGACTCCTGTGGTGGTGCTTGATGTGAAGATCTATGGCCAGTGGTTCACAAAGGGGAAGAGGTT TCTGTCGGCGGTCGCGAACCCAACAAGCCAATTGTCTGTGATTGGAAACTTGGTAGGGGCTCGGGTGGCTGCGGAGATGG GTTGGAAAGAGAGTGCAATTTGCTTGTTTTCTCTTGGGATTTCGCATTACTTGGTGCTTTTTGTGACTCTGTATCAGAGG TTGCCAGGGAATGATAATAGCCTCCCTCCTCTGCTGCGTCCTGTGTTCTTCTTGTTCTTTGCGGCGCCAAGCGTAGCCAG CTTGGCTTGGCGCTCCATTAGTGACGAGTTCGATACCGCTTCGAAGATGCTGTTCTTTCTCTCCTTCTTCCTTTTCATGT CTCTGGTTTCAAGGCCTCTGCTATTTAAGAAGTCCATGAAGAAATTCAATGTGGCATGGTGGGCTTATTCTTTTCCTCTG ACGGCTTTGGCGCTTGCTTCAGCAGAATATGCACATCAAGTTAAGGGACTCACTGCTCATGCTGTTATGTTGGTCTTATC ATTGATCTCAGTTTTGGTGTCTGTGGTTTTAATGATTGTCACTGCTCTCAACACTAGCATACCCTTACCAGCTAACAACC TTGACTCAGATCAGAAAAGCAATTGCACAGCAACGTGA
Protein sequence (LotjaGi3g1v0468300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEMSNSEKQPQTHIALPIVIDIPVTKTQSHNHNKSQIHVQSSSILSQIHAGYFRISLALSSQALLWKVLIEPIEDAHAL RKIFSFIPSTAFTFLWYLALFTLVTLSFLYVLRCVFHFDMVKDEFLSHVGVNYLFAPWISCLLLLESSPFVPSNSLSHRV LWCVFVTPVVVLDVKIYGQWFTKGKRFLSAVANPTSQLSVIGNLVGARVAAEMGWKESAICLFSLGISHYLVLFVTLYQR LPGNDNSLPPLLRPVFFLFFAAPSVASLAWRSISDEFDTASKMLFFLSFFLFMSLVSRPLLFKKSMKKFNVAWWAYSFPL TALALASAEYAHQVKGLTAHAVMLVLSLISVLVSVVLMIVTALNTSIPLPANNLDSDQKSNCTAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 93 | 93 | - | – | |
| PANTHER | 9 | 373 | 365 | 7.2E-176 | ||
| PANTHER | 9 | 373 | 365 | 7.2E-176 | – | |
| Gene3D | 43 | 367 | 325 | 4.3E-69 | ||
| Pfam | 49 | 361 | 313 | 3.1E-45 | ||
| CDD | 50 | 361 | 312 | 1.65245E-78 | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 94 | 113 | 20 | - | – | |
| Phobius | 114 | 124 | 11 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 125 | 145 | 21 | - | – | |
| Phobius | 146 | 156 | 11 | - | – | |
| Phobius | 157 | 178 | 22 | - | – | |
| Phobius | 179 | 217 | 39 | - | – | |
| Phobius | 218 | 239 | 22 | - | – | |
| TMHMM | 219 | 238 | 20 | - | – | |
| Phobius | 240 | 250 | 11 | - | – | |
| TMHMM | 251 | 273 | 23 | - | – | |
| Phobius | 251 | 271 | 21 | - | – | |
| Phobius | 272 | 282 | 11 | - | – | |
| TMHMM | 283 | 302 | 20 | - | – | |
| Phobius | 283 | 301 | 19 | - | – | |
| Phobius | 302 | 312 | 11 | - | – | |
| TMHMM | 309 | 331 | 23 | - | – | |
| Phobius | 313 | 331 | 19 | - | – | |
| Phobius | 332 | 342 | 11 | - | – | |
| TMHMM | 341 | 363 | 23 | - | – | |
| Phobius | 343 | 363 | 21 | - | – | |
| Phobius | 364 | 385 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular ion homeostasis | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. | ||
| Molecular function | Voltage-gated anion channel activity | Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0468300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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