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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0473600 |
| Transcript ID | LotjaGi3g1v0473600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|I1LRJ8|I1LRJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0473600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89046235..89047429) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAAATGCACCTTCCAAGTAGCATCTTCACCCCTCCACCCAAGAGCTTTCCCGTTCACTCATATAAAACCTTCACTCC ACCTTCTTCTTTCTCAATCCCACAACGAAATTCAAACACACAAGTCTTCTCCCAAGTGAGTCCAGAGCAAACTGACAGCA GAAGAGAATTTGAACAAATCAATTAAAGATGGGCGTGATGATGAACGAAAACCAGAACATGAAACCTGTGGTGATCCGGG AAGTATGGGCCTTCAATTTAGAATCTGAATTCCAACTCATCCGTGAACTCATTGATCAATACCCTATCATTTCCATGGAT ACAGAGTTCCCCGGTGTCATCTTCCGGCACCCCGCTGCACCTCACCACCACCGTAACCTCCGTCCCTCTGATAACTACAG GCTCCTTAAGGCCAACGTTGACGCGCTCAACCTCATCCAGGTTGGCCTCACTCTCACCGACGCCGCCGGAAACCTCCCTG ACCTCGGAAGTGGGGAGAGCAGCTTCATCTGGGAATTCAATTTCCGCGATTTTGATGTCGCCCGTCATGCCTATGCTCCG GATTCAATCGCCCTGCTCTGCCGCCAAGGGATCGATTTTGCGCGAAACGCCGCTTGGGGCGTTGATTCAGCCCGGTTTGC TCAGCTGATGATGTCATCAGGACTTGTTTGCAACGACGCCGTGAGCTGGGTCACGTTCCACAGCGCTTATGATTTTGGGT ACTTGGTGAAGATCCTGACACGCCGAAGCCTTCCGACTCGATTGGATGAGTTCTTGAAGATTGTGAGGGTGTTTTTCGGA AACAACATTTATGACATTAAGCATGTGATAGGTTTCTGCAACTCTCTTTACGGTGGTCTTGATCGAGTTGCTCAATCACT TAATGTGAATCGGGCTGTTGGGAAATGTCATCAAGCCGGGTCTGATAGTTTGCTAACATGGCATGCATTTCAAAAGATTA GAGACGCTTATTTTGTAAAAGATGGACATAAGAAACATGTAAATGTCTTGTATGGGTTAGAGTCAGAGCTTTGTTAGTTA CCAGAATTATAATACAAATTCAATTGATTGTTTAATACTTTTGATAATTTTTTATTTTTATTTTTTATATTAACTTCACT ACTATAATGTGTTTGTTTGTTTATATCTACGTCCTAATTAAATAACGTGGATCATAATTTGTCTAAAAATGAAAA
CDS sequence (LotjaGi3g1v0473600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGTGATGATGAACGAAAACCAGAACATGAAACCTGTGGTGATCCGGGAAGTATGGGCCTTCAATTTAGAATCTGA ATTCCAACTCATCCGTGAACTCATTGATCAATACCCTATCATTTCCATGGATACAGAGTTCCCCGGTGTCATCTTCCGGC ACCCCGCTGCACCTCACCACCACCGTAACCTCCGTCCCTCTGATAACTACAGGCTCCTTAAGGCCAACGTTGACGCGCTC AACCTCATCCAGGTTGGCCTCACTCTCACCGACGCCGCCGGAAACCTCCCTGACCTCGGAAGTGGGGAGAGCAGCTTCAT CTGGGAATTCAATTTCCGCGATTTTGATGTCGCCCGTCATGCCTATGCTCCGGATTCAATCGCCCTGCTCTGCCGCCAAG GGATCGATTTTGCGCGAAACGCCGCTTGGGGCGTTGATTCAGCCCGGTTTGCTCAGCTGATGATGTCATCAGGACTTGTT TGCAACGACGCCGTGAGCTGGGTCACGTTCCACAGCGCTTATGATTTTGGGTACTTGGTGAAGATCCTGACACGCCGAAG CCTTCCGACTCGATTGGATGAGTTCTTGAAGATTGTGAGGGTGTTTTTCGGAAACAACATTTATGACATTAAGCATGTGA TAGGTTTCTGCAACTCTCTTTACGGTGGTCTTGATCGAGTTGCTCAATCACTTAATGTGAATCGGGCTGTTGGGAAATGT CATCAAGCCGGGTCTGATAGTTTGCTAACATGGCATGCATTTCAAAAGATTAGAGACGCTTATTTTGTAAAAGATGGACA TAAGAAACATGTAAATGTCTTGTATGGGTTAGAGTCAGAGCTTTGTTAG
Protein sequence (LotjaGi3g1v0473600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVMMNENQNMKPVVIREVWAFNLESEFQLIRELIDQYPIISMDTEFPGVIFRHPAAPHHHRNLRPSDNYRLLKANVDAL NLIQVGLTLTDAAGNLPDLGSGESSFIWEFNFRDFDVARHAYAPDSIALLCRQGIDFARNAAWGVDSARFAQLMMSSGLV CNDAVSWVTFHSAYDFGYLVKILTRRSLPTRLDEFLKIVRVFFGNNIYDIKHVIGFCNSLYGGLDRVAQSLNVNRAVGKC HQAGSDSLLTWHAFQKIRDAYFVKDGHKKHVNVLYGLESELC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 280 | 274 | 3.3E-139 | – | |
| PANTHER | 7 | 280 | 274 | 3.3E-139 | ||
| SUPERFAMILY | 9 | 277 | 269 | 5.54E-76 | ||
| Gene3D | 12 | 277 | 266 | 7.0E-104 | ||
| Pfam | 21 | 145 | 125 | 2.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Poly(A)-specific ribonuclease activity | Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi3g1v0473600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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