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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0475900 |
Transcript ID | LotjaGi3g1v0475900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Germin-like protein; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q652P9|GL93_ORYSJ Germin-like protein 9-3; TrEMBL-Plants: tr|K7LTV3|K7LTV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0475900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89253807..89254701) extracted from Lotus japonicus Gifu genome v1.2.
GTCTGATTTATCAACAATGTTTTCTGCCTTCTAGTACTTGCTACTAAATTTGGCAATCAAACAGCCTGGAATGCCTTGAA TCTTTCATTGTAGTTCTCGCGTCCAAATTGCCAGAGAAACCATACATAGAAACCCCTCTCGTCCCTACTCAAAACTCCCA ACAAAGAAAAACCCCTATATATATGAACACGCACTAGTCATCTTTAACTCCAACAATCATCTTACATTAACTCCCTCTAA CTAAGTAACCATGTCTTCCTCTGCCTTCAAAGTTCTCTCACTAGTCCTTTCTGCTTTTGCCATTGTGCAAATGACAATTG GTGGTGACCCTGACATACTCACTGATTTCATAAGCCCAATTAATGGCATAATAGATGGAAACTTCTTCACCTTCACAGGC TTTCGTGCACTTTCAGGACAAAAGACACCACCACAAGCCTTCAAGGTAATCAAAGCAAGTGGAGCAGAGTTCCCTGCTCT TATAGGCCAGAGTGTGTCCTACGCTGTCCTTGAATTCCCTGCTGGAAGCATCAACCCACCCCACACTCACCCTCGTTCTG CTGAGCTTCTCCTTGTTACTCAAGGTGCCCTTCAAGTTGGATTTGTGGACACAACCAACAAGCTCTTCACACAAAGCCTT CAAGCAGGGGACATGTTTGTTTTCCCAAAGGGTCTTGTCCATTTCCAACACAATGCTGATGCGAACAACCCTGCTCTTGC TCTTTCCGCCTTTGGCAGCGCCAACGCCGGCACTGTCTCGCTTCCCAACACGCTCTTTAATTCCTCCATTGATGACACTG TTCTAGCCTTGGCCTTCAAGACTCAGGTCTCCACTATTCAGAGTTTGAAGAAAGGATTTGCTCCTTAAGCCCCATAATGG GTAGAACATGTTGTT
CDS sequence (LotjaGi3g1v0475900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCTCTGCCTTCAAAGTTCTCTCACTAGTCCTTTCTGCTTTTGCCATTGTGCAAATGACAATTGGTGGTGACCC TGACATACTCACTGATTTCATAAGCCCAATTAATGGCATAATAGATGGAAACTTCTTCACCTTCACAGGCTTTCGTGCAC TTTCAGGACAAAAGACACCACCACAAGCCTTCAAGGTAATCAAAGCAAGTGGAGCAGAGTTCCCTGCTCTTATAGGCCAG AGTGTGTCCTACGCTGTCCTTGAATTCCCTGCTGGAAGCATCAACCCACCCCACACTCACCCTCGTTCTGCTGAGCTTCT CCTTGTTACTCAAGGTGCCCTTCAAGTTGGATTTGTGGACACAACCAACAAGCTCTTCACACAAAGCCTTCAAGCAGGGG ACATGTTTGTTTTCCCAAAGGGTCTTGTCCATTTCCAACACAATGCTGATGCGAACAACCCTGCTCTTGCTCTTTCCGCC TTTGGCAGCGCCAACGCCGGCACTGTCTCGCTTCCCAACACGCTCTTTAATTCCTCCATTGATGACACTGTTCTAGCCTT GGCCTTCAAGACTCAGGTCTCCACTATTCAGAGTTTGAAGAAAGGATTTGCTCCTTAA
Protein sequence (LotjaGi3g1v0475900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSAFKVLSLVLSAFAIVQMTIGGDPDILTDFISPINGIIDGNFFTFTGFRALSGQKTPPQAFKVIKASGAEFPALIGQ SVSYAVLEFPAGSINPPHTHPRSAELLLVTQGALQVGFVDTTNKLFTQSLQAGDMFVFPKGLVHFQHNADANNPALALSA FGSANAGTVSLPNTLFNSSIDDTVLALAFKTQVSTIQSLKKGFAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 24 | 24 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
Phobius | 1 | 24 | 24 | - | – | |
PANTHER | 2 | 202 | 201 | 2.5E-95 | – | |
PANTHER | 2 | 202 | 201 | 2.5E-95 | – | |
Phobius | 8 | 19 | 12 | - | – | |
Phobius | 20 | 24 | 5 | - | – | |
Phobius | 25 | 205 | 181 | - | – | |
Gene3D | 25 | 205 | 181 | 4.2E-55 | ||
SMART | 51 | 197 | 147 | 1.3E-38 | ||
Pfam | 59 | 195 | 137 | 1.5E-30 | ||
SUPERFAMILY | 66 | 203 | 138 | 4.46E-32 | ||
PRINTS | 98 | 118 | 21 | 2.6E-21 | ||
PRINTS | 128 | 148 | 21 | 2.6E-21 | ||
PRINTS | 162 | 177 | 16 | 2.6E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0475900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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