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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0476500 |
| Transcript ID | LotjaGi3g1v0476500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|A0A0L9V664|A0A0L9V664_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0476500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89312622..89317351) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTGCAGTTGAATCAATTCACTTCCTTTTCTTTCCCACCACTTTTCTCCATCTCTCTCTTCTCAACAGAACCACACT ATGTTCAACACAAACAATAAACAAATGAAACTTCAGTTCATGATGATCCTCACGTTCCACATTGTTCGAGACTACCCTTT TCTTGGATCCACCTCCAACTACCTCTTTTCTTGAAGAGATTGACCATTTCCTCATCAGAATCAAATCTTTTTCTCATTTT CAATCATTTTTTTATCTTCCAAGAAGAAAGGGTCTTCTTCTTTTTTCTTTTTCTTTGTTTTCATTGCCAGCCATGACAGA GGTGCTACATTCTCCAACACCAACATCATCGCCAACCACTCCTTCTTCCTCTGATGGCGGCATTCTCATTCTCAGCCGTC CAGACCAAGAAGAACAACCACCCTCTTCTTCTTCCTCTGCTTCCTCTGTTTCCCCTGCTTCTTGTTCTGTAGCTGAGGCT GTGGATGGTTTTTCTACGGTCACTGACGGTGACTCAGAGGAGATCACGGTGGTCACTGACAGAAACCACCACAGGACGCA GCAGGAGCTGTCCCTTTTGGCAATTCTTGTGACCCTTTTAAGGAAATCCTTGGTTGCTTGCAAGAGTGAAGGGAGGGAAC TCTGTGCCATGGAAATTGGTTGGCCCACTAATGTGCGCCATGTTGCGCATGTTACCTTTGATAGGTTCAATGGTTTCTTG GGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCACAAGGCCTCCCAGTGCAAGGTTGGTACTCACTCACTCACACTCACT ACTACATTGTTGTTTGTTGTTAATTTGTTCTGTTGTTTTCTTTTACTTTGAAAAAGTAATCAATGTTGTTTTCTTTTTCC ATCATTAATATCATATGTCATGATCATGACACTACTAAGTTTCTTTAGATGTAGTGTGTGAATTTTCTTCCCACAGCATT GTGGGGTGTATAGTTACAAATTAGCAATTTACTCCTTTTGTTCATTGACATTCACATGGGTTTGACTATGTGGGGTGCGT GTAACTGTGTATGTATTATTCCTTGGATTAGTCATTAGGTGGGGCAGTAATGGAATTTCAAGCAAATTGGAGTTAATTCA ATCTTCATTGTTCTATATCCTTTTTCAATCTAATGTAGGCCCTCTTTACATACTGGGGCTTGCATGGTGATTTTCTGTTT CTGGAATTTGTATAACTCAGACATCAAAATACCATTTTTAAGGAATTTTTTTCTCTTGGGGTTCAACTGCCCCATTTCTT GTACACTTGGGTCATTCCTTGTAAGAAAAAAAGAGCAGGAGTTTAAATATTAAGAGGTTCTTCAATCTTAATCACAGCAC AGATTAGTTGAAATTTCTGATATTTTTTTACCTGTGTTTGTCTTGTTGCTTAAAATCTGCATCTATAAGATCTCTAGCTT TATAATGCTGCTATCTCTTCCCCTTTGACCTTGTTTAGTTTCCAGCAATCTGCTTCAAGTGAGATAGCTACCAATTTTGT AAGCGCTTTATGAGTCTATTTAGTGATTTTGATTGTCACATTAAAAGCCTTTTCTAGATTGTCTGTTTTTGTCAATTCTT CATACAAGGCACTTTGTTTGTTTTTTAGTGACTTTTTTAGCTGCCTTGGGGCCTCGGATGTGGTCCATCTGTTTAAATGT GTAAATGTTCCCTTTTTTGGTCTACAAATCATTAACTTGATGATGGTCATTGGTTTCTTACTACCTTCAGTCCATAATTT TAGTTGTTTAAGGTTATGCATGTAGTTTAAGAAGTCTTTAGTTGATATCTAATTTACAACAAACTCATTACATTTATTCT TCCTCAACTTCCCACCACCAAGTACCAACCCACAATAAATGAAAGAAATTAAAACAACAAAAATAGAATGGAGGAAGTAC TAGTAGTTATCTTGGGCTATAGGCCACCATTACAATCATGGATAATATCAAAAGGATTTTTATGACTTCTGTCCAATTGT ATTACTTGTGATGAGTGAATGTCGTATATGACAAAATGTTTATATAGTTTTCTTTGGAAGTTCAAAGCTCTGTCAACCTT GTAGAATATTTGCAGTGAAAACTTTTCCATACCCCTCCTGAGTGCTGCCCTGTCATAATTCACAAATAATGAGTTTTAAA ATTTACATTTTAGTGATTAATAAGAAGAGAGCAGCACAGCCCTCTAAATTTGAGAGCGGGCATGAAAGAGCTACCCTATT TGTAGTTAGTTGTATTCATCACGAATGAAGATGTTAGTTGTCTTTTTCATGAATGCATGATTGCCATTTCTTGTTTAGTT AATTCAAAATCCTTGAACTAATGTGATGTGTGATTTTTGGTGAATTCTCTTGTTTTTCATTTTCACATGCAGTGCAACTG TGTTTGGAGTTTCAACAGAATCAATGCAGTTATCATATGACACAAGAGGGAACAGTGTGCCAACAATTTTGTTACAAATG CAAAGGCACTTGTATGCCCAAGGAGGGTTGCAGGTTGATCACCTAGATCTTTCTCAGCTCATCTTCTCCTTGTCTCAATT TCTCATATTGTTGAATATAACAACTGAACACAATTACAAAAAAAAAAAACAAGACAGTCCTTTATACTTCACCACTCTAC AATCTGTCATTGCTTCATTTTACAAATGTCAAAATGTAATCTTGGTTAAACAATTGAATTTATGTATGCAGGCAGAGGGG ATTTTCAGAATTAATGCAGACAATACTCAAGAGGAATATGTTAGGGATCAAATAAATAGGGGAGTGATCCCAGAAGGCAT TGATGTACATTGTTTGGCAGGACTAATCAAGGTATAACAATGAAAGTAAATCCTAGAAAATACAATCTGTAACTTCTGCT TACTATATAATTTGTTTGTGATTTTGTTTTGGCATGATTATTGATTTGATATTCTTGTGCTTCCCAAGGCTTGGTTTAGG GAACTGCCTACAGGTATTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGTCAAAATGAAGAGGATTGTGCTGAACT GGCAAGGCAACTACCTCACACTGAAGCTTCCCTTCTTGACTGGGCTATTAATCTGATGGCTGATGTTGTCCAAGAGGAAC ATCTGAGTAAGATGAATGCACACAATATTGCCATGGTTTTCGCGCCAAATATGACTCAGGTTAGTTCCAGTAAACTCAGT TTCTCCAGGAATAGTAGGGAGGAAAATGCATACATATACTGTATTAGTCCTTTTCATTGTTTTCATTCTCTAATATATTA AACTGCATGTGGACATGTTGGCAACAATTGATGTTTTGTACTCCATGTATTTTCAGCCCTATTTGTTTGAATTTGGTCAT GTGTGTGCTTAAAGCTGTGAAGGCTTTAAGTGCTTCCTTTTGTGGCTTGAAAAAGAAAATGTTGTGTAGACACCGCGAGT GAGAAAGGAAGATAAGAGAGAGAGGTAATGAAAGTTATATATGACGTGATATGATAAGAAGTGAGAGATAGAGCGAAAAT TAAAGTATATGTGATGTGTTTGTACTGTTTCCTGTCTATGTATCATAACTGCTTGACAAACTTACATGGTCATTGTGACA TACTTTCCACTTTATTGAAGTCTTGACTGTTTAAGATGCCAATGAAATGTGGCTTATGTATCTGATGAGTAAAGCTGATT GCAGATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTAATATTAAGGACAC TGCAGCGAAGAAAGGATTCTGTGGTAGAACCCTCTCCTAGATTTGATTTAGAGCCTTCTGATGAGAATGGGGAGGACCAA AGTCCTTTGGGATCGTACCAGCAAGATGTTGCCTCAGAAAATGAAGAGGAAGTGGAATCCTTTGTTTGGGAGAAAGCTGT ATCAGAATGTTCCCCTGAACCCTTCCAAAACAAAGATTCAACTGAAGGAGAACCTGAAAGTTTGATGAGCTCTTCTGAGA TTCTAGTTTGTGAAGAGGATTTGTATTGTCAGTTTCCACCCAAAGGAAATGTTGGGATGAGTAAGACTGGTCAATCAAGT AGTTCAATTGCTAAAAAGGGCTTCAAGAAAACCAGAGGCCAGCAACCTATGATCCATGGAACAGTGGCTGTTGAGAAAAA AGGTATTAGCAATTTGAGCCTCATAGACTCAATATCAGAGAGGATAGAAGCCTGGCGGTGAAAGAAGCATCACTGTGCTG TAGTGTAAGAACCGGTTTGGATGCAAAATGCAAACCAAAGAGCGCTTATTGGAGCTTATCTAGTGTTTTTTTTCCCAGTA GATAAGCTCCAATAAGTGCTCTTTGGTGCATATCTAAACAAGCTCTAAATTGTTTCTGTAATTGTAAGTTTGTTTGGGTC TGAAGCTGCAACTTGGAATGATAAGTATGTGAAATGGTTCAGTTTTTTGAATTTCCTTGGTTTGCTGAACTTGTTTTCTT TCAAGAATGGCACAAACAACTCTACTAACATTGTAACAAAATCTTTTCCTGTGTGTTAAGTTGTGTTCTGGTAATTATTC CTGGTTGGTCATTCATCTGTCATTTGTTGCAATGTTCAAGTTAATCACTTATGGATTCTTACTACCTACTAGGTATCCTA CCAGTGTACAAGGCAACTAATGCAGTACAATAGGTTTGCCATAATCCTTAAGTACTTGCTAAATAATGATATTATTGACT ACTTTGCTAA
CDS sequence (LotjaGi3g1v0476500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGGTGCTACATTCTCCAACACCAACATCATCGCCAACCACTCCTTCTTCCTCTGATGGCGGCATTCTCATTCT CAGCCGTCCAGACCAAGAAGAACAACCACCCTCTTCTTCTTCCTCTGCTTCCTCTGTTTCCCCTGCTTCTTGTTCTGTAG CTGAGGCTGTGGATGGTTTTTCTACGGTCACTGACGGTGACTCAGAGGAGATCACGGTGGTCACTGACAGAAACCACCAC AGGACGCAGCAGGAGCTGTCCCTTTTGGCAATTCTTGTGACCCTTTTAAGGAAATCCTTGGTTGCTTGCAAGAGTGAAGG GAGGGAACTCTGTGCCATGGAAATTGGTTGGCCCACTAATGTGCGCCATGTTGCGCATGTTACCTTTGATAGGTTCAATG GTTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCACAAGGCCTCCCAGTGCAAGTGCAACTGTGTTTGGAGTT TCAACAGAATCAATGCAGTTATCATATGACACAAGAGGGAACAGTGTGCCAACAATTTTGTTACAAATGCAAAGGCACTT GTATGCCCAAGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATACTCAAGAGGAATATGTTAGGGATC AAATAAATAGGGGAGTGATCCCAGAAGGCATTGATGTACATTGTTTGGCAGGACTAATCAAGGCTTGGTTTAGGGAACTG CCTACAGGTATTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGTCAAAATGAAGAGGATTGTGCTGAACTGGCAAG GCAACTACCTCACACTGAAGCTTCCCTTCTTGACTGGGCTATTAATCTGATGGCTGATGTTGTCCAAGAGGAACATCTGA GTAAGATGAATGCACACAATATTGCCATGGTTTTCGCGCCAAATATGACTCAGATGGCAGACCCTTTGACTGCATTGATG TATGCAGTTCAAGTGATGAACTTCTTGAAGACACTAATATTAAGGACACTGCAGCGAAGAAAGGATTCTGTGGTAGAACC CTCTCCTAGATTTGATTTAGAGCCTTCTGATGAGAATGGGGAGGACCAAAGTCCTTTGGGATCGTACCAGCAAGATGTTG CCTCAGAAAATGAAGAGGAAGTGGAATCCTTTGTTTGGGAGAAAGCTGTATCAGAATGTTCCCCTGAACCCTTCCAAAAC AAAGATTCAACTGAAGGAGAACCTGAAAGTTTGATGAGCTCTTCTGAGATTCTAGTTTGTGAAGAGGATTTGTATTGTCA GTTTCCACCCAAAGGAAATGTTGGGATGAGTAAGACTGGTCAATCAAGTAGTTCAATTGCTAAAAAGGGCTTCAAGAAAA CCAGAGGCCAGCAACCTATGATCCATGGAACAGTGGCTGTTGAGAAAAAAGGTATTAGCAATTTGAGCCTCATAGACTCA ATATCAGAGAGGATAGAAGCCTGGCGGTGA
Protein sequence (LotjaGi3g1v0476500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEVLHSPTPTSSPTTPSSSDGGILILSRPDQEEQPPSSSSSASSVSPASCSVAEAVDGFSTVTDGDSEEITVVTDRNHH RTQQELSLLAILVTLLRKSLVACKSEGRELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPTRPPSASATVFGV STESMQLSYDTRGNSVPTILLQMQRHLYAQGGLQAEGIFRINADNTQEEYVRDQINRGVIPEGIDVHCLAGLIKAWFREL PTGILDSLSPEHVMQCQNEEDCAELARQLPHTEASLLDWAINLMADVVQEEHLSKMNAHNIAMVFAPNMTQMADPLTALM YAVQVMNFLKTLILRTLQRRKDSVVEPSPRFDLEPSDENGEDQSPLGSYQQDVASENEEEVESFVWEKAVSECSPEPFQN KDSTEGEPESLMSSSEILVCEEDLYCQFPPKGNVGMSKTGQSSSSIAKKGFKKTRGQQPMIHGTVAVEKKGISNLSLIDS ISERIEAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| MobiDBLite | 32 | 49 | 18 | - | – | |
| PANTHER | 53 | 420 | 368 | 1.2E-192 | – | |
| PANTHER | 53 | 420 | 368 | 1.2E-192 | – | |
| Gene3D | 112 | 144 | 33 | 5.9E-7 | ||
| CDD | 113 | 153 | 41 | 8.51201E-8 | – | |
| Pfam | 114 | 141 | 28 | 5.1E-5 | ||
| ProSiteProfiles | 115 | 128 | 14 | 7.601 | ||
| SMART | 115 | 149 | 35 | 1.5E-7 | ||
| Gene3D | 145 | 343 | 199 | 1.3E-34 | ||
| SUPERFAMILY | 155 | 334 | 180 | 1.37E-37 | ||
| ProSiteProfiles | 160 | 345 | 186 | 25.556 | ||
| SMART | 174 | 337 | 164 | 2.8E-30 | ||
| CDD | 177 | 333 | 157 | 5.67531E-32 | – | |
| Pfam | 177 | 311 | 135 | 1.7E-21 | ||
| MobiDBLite | 344 | 374 | 31 | - | – | |
| MobiDBLite | 393 | 413 | 21 | - | – | |
| MobiDBLite | 396 | 411 | 16 | - | – | |
| MobiDBLite | 435 | 451 | 17 | - | – | |
| MobiDBLite | 435 | 457 | 23 | - | – | |
| Coils | 478 | 489 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi3g1v0476500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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