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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0486500 |
| Transcript ID | LotjaGi3g1v0486500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G57620.1 myb domain protein 36; Swiss-Prot: sp|Q9FKL2|MYB36_ARATH Transcription factor MYB36; TrEMBL-Plants: tr|I1LR75|I1LR75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0486500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90391232..90394013) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTCCTGCTGTTTGGAAAGTGTCACAATTCTGGTAGCTGTACCCATCAATTCACTAGAGTCCCTGCAGCTTCATGCT CTGCTGTATTACTCTTTCTTTCTGCATTCAAACATTGGATGCTCTCCTTTTGAGAAGATCATGAATAAGAGAATGAATTT GTGCAGTTTAATACTATGGTTTTGTTGCCAGAGTCTCCAACGTTGAAGATTGGAAAGTTCTCTCTGACCCTCATCACTCT TCTTGCATATTAGTAATTATTAACACCCGTTGAATAATTAATTAAAATCAAACTGAACTAAAATTTTATATTTAATATGT AATGGTCTGTCCTTCTCTACATTTGACTTGTGTACAGGCCTCTCTTTCTCTCTATCTCTATGAAATGATAAATAAAATAA TAATTTCTCCCAAACCGAGGTCTCTTATTTATAAGGCATGGTATTTGTATATATATAACACAAACCACCAAAGTTTCATC TAGATAAGAAAGTGAGAGTTTGGATCATCAAAGACAGGTTTTGAAATTGCAGGGGAAAATACAAAGAGAGAAATGGGAAG AGCTCCTTGTTGTGACAAGGCAAGTGTTAAGAGAGGACCTTGGTCACCTGAAGAAGACTCAAAGCTGAAGGAGTACATAG AGAAGCATGGCACTGGAGGGAATTGGATTGCTCTTCCTCAAAAAGCTGGTAACTTGAAAACATCATCATGATTTCATAAA AAATGTTTCAATTTTGTAAAGTGGAAACACTTTTTTATATATATTTTTAGTGAGATCTCATGTATGTGATTATGAATATG ATGCTCTCAGGTCTGAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCATGG AGATTTCACAGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAACATAGGAAGCAGGTACAACACTTGTTCCTCTA CCATTAAATGCAACCAGTCCACAAGCTGTAGTTTTCAGCACTTTTTTCTTACCATGAAACTAAGGATCTTTCTTTCCAGA ATATTTACATGACACCTTTTCCCCCTCTTTTTCCACTTCAATCATCACCAGTTTCATATGCTCCAATGACACTCATAAAG TCTATCTACCTATTTGAAAGAGAAAAAGGGCAATAACTAGAAAGAGTGCTTGATTGCTCTTTAGAATCTGTCTATACTTG AATAGCACTTTCCACATGCATGCCAAGTTTAGATCCAACACACCACCATCCACTTACTGCATATCTGTAGACTCTTTCAA GAACTGTGGTGAAGCAAAAATCACGCTAGACACAGAAGTAACATCTTTTAACTTTGGTTTTTTATCTATCATGATTTCGA CTTCATCATGATTTTCGAATGAGTTTCTAAAGCATTTCATAGCATGCATTTAGTTATGGTTAATTTAGGCACATATTTTG TTTTGTCCATGAGTGGAAGTTTAAACTTAATTAGCTTCTATAACATGATTTGCAGGTGGTCAATTATAGCTGCTCAATTA CCAGGAAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGGGTTGCTTCCAATATC TTATCACAGAGGAAAATCTTCATTCCCATCTTCCATTCAAAACCCTTCACCTTCTCCTTGTCACCAATCAATGTATAGAG ACTACTCCTCATACATCCCAACAAATGCATCATCCTTCACAGGCCTTGACCCAATTTCACTCCATTCAAGCATTTATGCA AATCCAAGGTCCACAACAACAACCTCATCAGTTTCTCTCCCCTTTTACCAAAACCAAGAGGCCATGCAATACTACTGCCC TGGGAGATCAGAGAACATGCTGATGTTTGGGAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCACTCAGGTGAAGG AGATCAAGCAAGAAGAAATGGGTTATTACAACATGTCAAGTGGGTATGATCATGAGTATAATAATAGTTTAATGGTTAGT TATGGTAGCATTAATGGTGGGGGTGAAAAAGTGAACCAATATGCAGAAAAGTCATCAGGGGGAGGTGGCTGTTGCTCTGA CCAAACAACACTGTTATCACCTTTAGATTATGGGATTGAAGATATTCAGCAATTGATTAGTAGTAGTTGTGGTAGCAGAA GTGATTTCAATGTTGTTGATGAAAACAAGACTGAGGAGAAGGGCATGTACTACTACTATTACTGACTACTACAACTTATG ATGAGTTTGACTGGGGTAATTAGGGGGTATGTTGGTGGGAATTAGATTCAGATTCTGGGGTTCTGCGTTTCTTTCATGAA ATGAATCATTTCTTTATTTTGACAGTACATGGGTTGAAGTTTCTTAATTTTTTGTGCATGTCTTCTCAGAAGTGATGATG ATGATGATCATGTTAATTAGATTTCTTGAGTATAAACTCCACAATCAGATGTAACTGTTATGAAAATAGTGAGTAAACAA ATCACCAGCAATAGATTAGAATTATTTTACAAAAGAAATTACCAATTTTTAATATGGTTTATCATTGAGCTGTCTGAGAA ACTATCATGTGGGATTAGAATTATTTTATATCTTTGTCTATGTGTCTTAAGAAATATATGGATCACATATTAAAATGATT TCAATGTAAACATATGCTAACTATTACATTTTATAAAAGCATAGTTCATGATCAATTTTTAATATGATCAATTGTATGAG AAGATGGAATTTTGTTTTACAACAAACCTTTAGTTTTTCTTAATAATAATAATAAACAGAAA
CDS sequence (LotjaGi3g1v0486500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAGTGTTAAGAGAGGACCTTGGTCACCTGAAGAAGACTCAAAGCTGAAGGA GTACATAGAGAAGCATGGCACTGGAGGGAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTGAAGAGATGTGGGAAAAGTT GCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCACAGATGAGGAAGACAGAATAATTTGC AGCCTCTATGTTAACATAGGAAGCAGGTGGTCAATTATAGCTGCTCAATTACCAGGAAGGACTGACAATGATATCAAGAA CTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGGGTTGCTTCCAATATCTTATCACAGAGGAAAATCTTCATTCCCAT CTTCCATTCAAAACCCTTCACCTTCTCCTTGTCACCAATCAATGTATAGAGACTACTCCTCATACATCCCAACAAATGCA TCATCCTTCACAGGCCTTGACCCAATTTCACTCCATTCAAGCATTTATGCAAATCCAAGGTCCACAACAACAACCTCATC AGTTTCTCTCCCCTTTTACCAAAACCAAGAGGCCATGCAATACTACTGCCCTGGGAGATCAGAGAACATGCTGATGTTTG GGAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCACTCAGGTGAAGGAGATCAAGCAAGAAGAAATGGGTTATTAC AACATGTCAAGTGGGTATGATCATGAGTATAATAATAGTTTAATGGTTAGTTATGGTAGCATTAATGGTGGGGGTGAAAA AGTGAACCAATATGCAGAAAAGTCATCAGGGGGAGGTGGCTGTTGCTCTGACCAAACAACACTGTTATCACCTTTAGATT ATGGGATTGAAGATATTCAGCAATTGATTAGTAGTAGTTGTGGTAGCAGAAGTGATTTCAATGTTGTTGATGAAAACAAG ACTGAGGAGAAGGGCATGTACTACTACTATTACTGA
Protein sequence (LotjaGi3g1v0486500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKASVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFTDEEDRIIC SLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPISYHRGKSSFPSSIQNPSPSPCHQSMYRDYSSYIPTNA SSFTGLDPISLHSSIYANPRSTTTTSSVSLPFYQNQEAMQYYCPGRSENMLMFGSEGSCSSSDGSCTQVKEIKQEEMGYY NMSSGYDHEYNNSLMVSYGSINGGGEKVNQYAEKSSGGGGCCSDQTTLLSPLDYGIEDIQQLISSSCGSRSDFNVVDENK TEEKGMYYYYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 330 | 330 | 1.9E-95 | – | |
| PANTHER | 1 | 330 | 330 | 1.9E-95 | ||
| Gene3D | 7 | 68 | 62 | 6.6E-20 | – | |
| ProSiteProfiles | 9 | 62 | 54 | 14.65 | ||
| SUPERFAMILY | 11 | 109 | 99 | 1.96E-27 | ||
| SMART | 13 | 64 | 52 | 4.7E-13 | ||
| Pfam | 14 | 62 | 49 | 6.0E-15 | ||
| CDD | 16 | 62 | 47 | 1.29225E-10 | ||
| ProSiteProfiles | 63 | 117 | 55 | 22.138 | ||
| SMART | 67 | 115 | 49 | 5.0E-11 | ||
| Pfam | 69 | 111 | 43 | 1.1E-9 | ||
| Gene3D | 69 | 121 | 53 | 1.2E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0486500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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