Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0487500 |
| Transcript ID | LotjaGi3g1v0487500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ; TAIR: AT3G45050.2 transmembrane protein; Swiss-Prot: sp|Q8DI39|UVRC_THEEB UvrABC system protein C; TrEMBL-Plants: tr|C6TFV3|C6TFV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0487500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90515193..90518240) extracted from Lotus japonicus Gifu genome v1.2.
TATTTTAAATTATATACCATCTCTTGGGAGATATGATATCTACAAAAAGCTTCTGAAAGGCGAGCAAGGAACGGGATAAG AGAGCAGAAGGAGCTATACTTGGTGGACAGAACAGGACAGTTATCTGAACATCATGGATATTCATCTTGTTGTGCAGCAC CCTATATCACTTCCCACCTTCTCTAAGAGTGAGATATTTTCTTCTTGTTTTCATGATTGATTACAAATCAAACAAGTGTC ATGTAAATTCTAGTTTGTTCTCATCAATCCTAGTTGTTCTTGCTGATATATATGATAACTGAAACTTCATTAAGTTAGTA GTTAACTAATTCTGGTGTGGGATGAAGAGGTATGTGTGTGTGTAAATGCATGCAATGTAGCTTTTATGGAGGAACAGTCC CAGTAGGTAGACTTCACCTTCACTATTTTTTCAGACTAATAGGATAGGTGTCTAGTGTTAGCTCAAAAGAAATCCAAAGT TAACTCATGAGAATTGATGTTGGGTGAAAATTGTTACTGTAGTTTTTCCCAATTGTTATGTAATTCTGTCTAATTCAATT AGTGTTGCTGGTGCTGGTGAAAACCCAGAAATGTAGATAGGTCTACTTTAGTTTTGATCTAAATTAATTAATTTGAAAGT TGTCAAATGTTAAGTAAACATCCAGAAGATTGATTTATACTCTATATATTGGTTATCTTAATAAATTTTGTGGTTCACTT TTTCTTTTTTCATAACCAACACTAATTAGAGAGTTAATGTTAGCTCAAGTATCTTATGCCATGTTTGGAGTTTTTTCTCC AATTGACTCTAAAGCCAAAATCAATTCTGGGTAGAAGTTTATGTTGTTTCCATCTCAAATGCTGTTCCTGTAACTTCGTT TTCCCATTCTCTCATTCACCCAAAATGTGCCAGTTGAGATGAGGGTCTAGGACCCTGATGTGAATTATGCTTTCCAGTCA GGGAATTAAATGTTCAAAACTTCATCATGACTGTTTCATCATATATTGTGAAAAGAAAATAGCAGCTTCTTTAATATTAG AATCGTGGCTTTGGAGCAATATGTCTTTGGTAAAATTTTCCACCATGTTGTAGTTCCTAGCTATAGTTGCTTTGCAAAGG TGGTGCTCAAGCCATAATTTATTTAATGCTGGATAGGAAATGGAAGAAATATAGAACAAAAAGAATATACAAAACATAAT ATGCCTTTGGAATTCACCAAAGATATACACCATGTAAAGAAATCAATCTTGAATTTCTATGGGAAAATACTAAATTCACG CTGAGTGGCTTGCTTAGAATCATCACCTAGAGACTAATTTACACTAACCTATTGTTTGTTAAGCTTGCACTAGAGGATGG AAGTTGACAGGAAAGAATAGGGAGAGAAGTTCCGTACTTTCTCCGTTTGGGATGCTGAGAAATGAAGGGGAACTATGTAC TAGTTATACCACTATTTTGACTGTTGTGTGATTCTTTTCAATTTTGATTCCATTCTCCTTTTAATCCATTGGTAGAATCA ATCATTCCTTAGGTATCTTAGTTTATTATTGAGGAACCCCTTACTGTTCTCACTTGAACCTGTTTTATAGTGTCTCTAAG TAAGGTATTTCACTGATGAGAACTAGTAGCTACCTGATTATTTATGTTATAAAAATTTAAGGGAAAGCTATATTTGCTAT TCTCATTTTATTTCTTGAATAGATGTGAAATCACAATTACAAAGAAGGGGATTATCGGTCTCCTCTGCACTTCCTGAGAC TGCAGCTTCTGTGGCAGTCGCTGCGACTCTTGTTGGTGCAGCAGCCACTCTTCTTGCAAAGAGATCCAAAGCTTCCGAGC CCACACAGGTCAGTAACCAATCTTTATTGTTGGTATTAGTAAAATGATTCATCTTACTTACAAACTTTGCGATATGCCAC TGATAAAATCACTTTACTTTTCCAAACAAGAACATGAAAATCTTTGGAATGCACATTTCATTCAAATGCTCAATAGTTGT TGTAACTTGTAATTGTAGTGTAGTACATTGCCTATGTTATGTGACATTTCTCTGTTTCACTGAAGAAAATTCATGGGAAA AAATAGTGTTGATCTTTCATATCACCTGACAATTTGCCTATCAAAAAAAAAAAAAAAAAAACATCACCTGACAATTTGGT TATTGCATCCAGTTTTCATTATTTTCCAAAAGGTGGTTCTGTGCACTCTCTTCATGATTCTAAGACATTATTGACTATTC ATTCATGTCATTGTTGCCAGAATTAGGCTTGAAAATAGGGAGCAAAGCCTCTTGTTAATAAGCACAATTGCCATTTTTCA TGTGAAACTGGTATTCTAATTCAAGTACTTTTTTCTTGTCAAATTAAAGATTCAATTGAAAGTATGCGACGATTGTGGAG GTTCTGGTATATGTTCAGCTTGCAATGGTGAAGGATTCATGCTCAGGAAACGTTCTGATGAAAGTGCTGAGAAGGCAAGA GTGCAAGCTAAGAACGCGGCTACTCGATTCACGGCCGGGTATGATATTCATATCTCCCTTTTCCTCTAATTTTGAGTTTT GATTTGATCCACTCAATTCAATTACTAATACCAGGCTTCCAAAGAAGTGGAGCTACTGTACAAAGTGCTCTTCTGCTCGA AACTGTTCAACATGTGGCGGTAGTGGGAACCTAAGCCCCTAGTTTAGCTTCACATGTTCAAAATGCACAGATCCTCTTCA TTACAAATGGTCTTATTGAAATCAATGCTCAGAAGAAATCAGAATGAGTTAACATGATGAAGTAAAGATGGTGAGTAATT AACATTCAGATTTCAGATCTCTCAGGCATGAAGCAAAACTTTATGTGTATGTATTGTAGCACTGTGCAGGCGTTGTGTTC AGATTGATTATGTTGAGTCCTGAGAGAATAGGATATGAATTTACTGTTGAGAAGATGAGTAATGATATTTGTACAAACAT ACACTCTTCATATACTCCTATGCAAATTGTTGGATGGCACCCTCTTCCATTGTAACATTTTTTAATTATTCAGATTATGC ATATACCT
CDS sequence (LotjaGi3g1v0487500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATTCATCTTGTTGTGCAGCACCCTATATCACTTCCCACCTTCTCTAAGAATGTGAAATCACAATTACAAAGAAG GGGATTATCGGTCTCCTCTGCACTTCCTGAGACTGCAGCTTCTGTGGCAGTCGCTGCGACTCTTGTTGGTGCAGCAGCCA CTCTTCTTGCAAAGAGATCCAAAGCTTCCGAGCCCACACAGATTCAATTGAAAGTATGCGACGATTGTGGAGGTTCTGGT ATATGTTCAGCTTGCAATGGTGAAGGATTCATGCTCAGGAAACGTTCTGATGAAAGTGCTGAGAAGGCAAGAGTGCAAGC TAAGAACGCGGCTACTCGATTCACGGCCGGGCTTCCAAAGAAGTGGAGCTACTGTACAAAGTGCTCTTCTGCTCGAAACT GTTCAACATGTGGCGGTAGTGGGAACCTAAGCCCCTAG
Protein sequence (LotjaGi3g1v0487500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIHLVVQHPISLPTFSKNVKSQLQRRGLSVSSALPETAASVAVAATLVGAAATLLAKRSKASEPTQIQLKVCDDCGGSG ICSACNGEGFMLRKRSDESAEKARVQAKNAATRFTAGLPKKWSYCTKCSSARNCSTCGGSGNLSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 37 | 37 | - | – | |
| PANTHER | 18 | 143 | 126 | 7.0E-59 | – | |
| Phobius | 38 | 57 | 20 | - | – | |
| Phobius | 58 | 145 | 88 | - | – | |
| SUPERFAMILY | 69 | 93 | 25 | 9.42E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0487500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…