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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0488900 |
| Transcript ID | LotjaGi3g1v0488900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Receptor-like kinase; TAIR: AT2G33580.1 Protein kinase superfamily protein; Swiss-Prot: sp|O22808|LYK5_ARATH Protein LYK5; TrEMBL-Plants: tr|D3KU02|D3KU02_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0488900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90668814..90671088) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGGATGCTTTTGTTATAGAATCCACTCCTACCATTTCATCAATGACACATTCATATGAAAACTTCACAAGAGATATC AAACTAATCACTTTGACTTTGCAACCTTTTTTCAATTTTCTCCTTGCAACTCATTAGCGCTTGACTCATGATGATTTCTA AAACCATGATTCATCTTTGGTTTTTTTCTTTGACGTGCTTCAATGCATGCTCAGCTCAACTGGATTATGACCAATCAAGT TGCACTTCAAATGAAAGTTTCCCAGGGTCAAGGTACACCTGCAATTCAACTCATGATTCATGCAAAACATACTTGGTGTA CAGAGCCAATGAACGTTTCAAGACCATTTCAGATATCTCAAACCTCTTCAACATGAGCTCTAGACAGGTGCTTCACATAA ACAACCTCACATCATCTTCTGAGATACTTAAACAAGGTAAAGAGGTTCTTATTCCTGTTGATTGTACTTGCTCTGGAGAG TTTTATCAAGCTAGTCTCAGCTATAAAGTCCCTGAAATCACAACATTTTCAGAGATTTCATGTGGGGTTTTTGAAGCTCT ATTGAAACAACTCACTATGGCTGAGGAAAATCTTTCACAAGGTGAAAGCCCTGAAGTTGGTTCTGAGCTTCAAGTTCCTC TTAGATGTGCATGCCCTGGGAATTTCTCAAGTGGGAAGAAAGTGAAGTACCTTGTTACATACCCTGTAATTCTAGGAGAT GATTTAGACCAATTGACTCAGAAATTTGGCATCTCACCTGAAGGTTTTTTGGAACAAAATCACTTGAACTCCTTGTCCAC CCTTTACCCTCAAACTGTTGTTTTAGTTCCAATTGATGATGACCCCATCAGAATATTTGAAATTCCAGATTCTCCTTCTC CACCACCTGGTTTTCTTCCCACAAATCCAGTTAAGCTACATAAATCACTAGAATCATCACATTTGTATATTGCAGGATCT GTCTTAGGACTTGTGTTTTTTACAACACTGCTTGCAAGTGGACTCTACATGAAGAGAGTGAAAAAAAGTGATTCTGTACA CTCATTCAATACAACAAACACCTTGTGGTCATCCCCAATGAGAACCTCTCCAGCATGGTGCCTCTCTCCAGATCTTCTTC TTGGAATAAAGTACTGTTTGGTCAATTACCACATAAAAGAGCTTGAAAAGGCCACCAAAAGTTTCAGTGAAGAAAATAAG ATTGGTGATTTTGTCTATGAAGGCTTAATCAATAATATTGAGGTGATGATCAAGAGGATGAGGTTTGAAGACACAAGCCA GGTAATTGACTTACATTCCAAAATCAATCACATAAACATTGTGAACTTGCTTGGTGTATGTTATGGTGAGGGCAATGCTT CATGGTCTTATCTAGTTTATGAGTTGCCTAAAAATGGATGCTTGAGGGAGATTATATCTGATCCACTCAATCCTCTAAAC TGGTACAGAAGGACACAAATAGCATTTGATATTGCAACATGTCTTTACTATTTGCATTACTGCTCTTTTCCTTCCATAGC TCACATGAATGTTAGTACTAGAAATATTTTCATCACTGCAAACTGGAGAGGAAAATTGGCAGATGTTGGTGGTTCAACCA AAAGAAACGACAGCACAGAAATTCCCAAAGGATTAGTGGAACCAGGGAACCTTTTGAAGGGTACAGTATCTCAAAAAGTT GACATTTTTGCATTTGGGGTTGTCTTGCTTGAGTTGATCTCAGGAAAAGACAACTTTGATGGAAAAATGATTAAAGAATG CTTTGGACTTTTGTTGGGGGAAGCAAGTGAAGGGGGTTGTTTTGAAGGTTTGAGGAGTATCATGGATCCTAATCTGAAGG ATTATTCTCTTCCAGAGGCTTTGTGTTTGTCTTTTTTAGCAAAGGATTGTGTGGCAGATGATCCACTGCATAGGCCAACT ATGGATGATATCATGAAAGTCCTAGTCAAAATGGTTTAGCCAAGTGCAGAACAAGAAATTATATCAGGTGAATTAGATGA AATTAAGGTTGTAATTATGAAAATATCATGATGAGAAATAAGTTCCTGTGCTGGCTCCTCTCAAAACATGCAAGAGAGTC AAATTTATATCAAACATTTTCCCAATTATCAATGTCTGTTGGTTCAAATGGGAAGAAACTTAGTTCTCTTCAATCAAGAT ATTGGATTCAAGTCTTATAAATGAGATAAATAATGGGGGTATTTGGCTGTACTCTTACATTTTGGGGATCTTGTCAAGAC TGGGTGGCTGTCTGCCTTGTTTCTTAGCTCGTCGG
CDS sequence (LotjaGi3g1v0488900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATTTCTAAAACCATGATTCATCTTTGGTTTTTTTCTTTGACGTGCTTCAATGCATGCTCAGCTCAACTGGATTA TGACCAATCAAGTTGCACTTCAAATGAAAGTTTCCCAGGGTCAAGGTACACCTGCAATTCAACTCATGATTCATGCAAAA CATACTTGGTGTACAGAGCCAATGAACGTTTCAAGACCATTTCAGATATCTCAAACCTCTTCAACATGAGCTCTAGACAG GTGCTTCACATAAACAACCTCACATCATCTTCTGAGATACTTAAACAAGGATCTGTCTTAGGACTTGTGTTTTTTACAAC ACTGCTTGCAAGTGGACTCTACATGAAGAGAGTGAAAAAAAGTGATTCTGTACACTCATTCAATACAACAAACACCTTGT GGTCATCCCCAATGAGAACCTCTCCAGCATGGTGCCTCTCTCCAGATCTTCTTCTTGGAATAAAGTACTGTTTGGTCAAT TACCACATAAAAGAGCTTGAAAAGGCCACCAAAAGTTTCAGTGAAGAAAATAAGATTGGTGATTTTGTCTATGAAGGCTT AATCAATAATATTGAGGTGATGATCAAGAGGATGAGGTTTGAAGACACAAGCCAGGTAATTGACTTACATTCCAAAATCA ATCACATAAACATTGTGAACTTGCTTGGTGTATGTTATGGTGAGGGCAATGCTTCATGGTCTTATCTAGTTTATGAGTTG CCTAAAAATGGATGCTTGAGGGAGATTATATCTGATCCACTCAATCCTCTAAACTGGTACAGAAGGACACAAATAGCATT TGATATTGCAACATGTCTTTACTATTTGCATTACTGCTCTTTTCCTTCCATAGCTCACATGAATGTTAGTACTAGAAATA TTTTCATCACTGCAAACTGGAGAGGAAAATTGGCAGATGTTGGTGGTTCAACCAAAAGAAACGACAGCACAGAAATTCCC AAAGGATTAGTGGAACCAGGGAACCTTTTGAAGGGTACAGTATCTCAAAAAGTTGACATTTTTGCATTTGGGGTTGTCTT GCTTGAGTTGATCTCAGGAAAAGACAACTTTGATGGAAAAATGATTAAAGAATGCTTTGGACTTTTGTTGGGGGAAGCAA GTGAAGGGGGTTGTTTTGAAGGTTTGAGGAGTATCATGGATCCTAATCTGAAGGATTATTCTCTTCCAGAGGCTTTGTGT TTGTCTTTTTTAGCAAAGGATTGTGTGGCAGATGATCCACTGCATAGGCCAACTATGGATGATATCATGAAAGTCCTAGT CAAAATGGTTTAG
Protein sequence (LotjaGi3g1v0488900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMISKTMIHLWFFSLTCFNACSAQLDYDQSSCTSNESFPGSRYTCNSTHDSCKTYLVYRANERFKTISDISNLFNMSSRQ VLHINNLTSSSEILKQGSVLGLVFFTTLLASGLYMKRVKKSDSVHSFNTTNTLWSSPMRTSPAWCLSPDLLLGIKYCLVN YHIKELEKATKSFSEENKIGDFVYEGLINNIEVMIKRMRFEDTSQVIDLHSKINHINIVNLLGVCYGEGNASWSYLVYEL PKNGCLREIISDPLNPLNWYRRTQIAFDIATCLYYLHYCSFPSIAHMNVSTRNIFITANWRGKLADVGGSTKRNDSTEIP KGLVEPGNLLKGTVSQKVDIFAFGVVLLELISGKDNFDGKMIKECFGLLLGEASEGGCFEGLRSIMDPNLKDYSLPEALC LSFLAKDCVADDPLHRPTMDDIMKVLVKMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| PANTHER | 9 | 98 | 90 | 1.7E-187 | – | |
| PANTHER | 9 | 98 | 90 | 1.7E-187 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 430 | 407 | - | – | |
| PANTHER | 100 | 430 | 331 | 1.7E-187 | – | |
| PANTHER | 100 | 430 | 331 | 1.7E-187 | – | |
| ProSiteProfiles | 103 | 430 | 328 | 17.701 | ||
| Gene3D | 150 | 240 | 91 | 4.8E-10 | – | |
| SUPERFAMILY | 156 | 426 | 271 | 2.89E-42 | ||
| Pfam | 192 | 424 | 233 | 1.8E-20 | ||
| Gene3D | 242 | 430 | 189 | 1.8E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi3g1v0488900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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