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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0490000 |
Transcript ID | LotjaGi3g1v0490000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Two-component response regulator; TAIR: AT3G46640.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SNB4|PCL1_ARATH Transcription factor LUX; TrEMBL-Plants: tr|A0A0L9T7Z0|A0A0L9T7Z0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0490000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90831806..90834813) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTCCCCCTTCACAATCACCCCAAACTCCACCATTATTACAAATCACTAGCCCCATCATTTTATTTTATTTCAATT TCATCCCCACCATTATCTTTCTTCCCCAAAATCATTCTTTCTTCCTCACTTTCCCTCTTCACATCACACAAGCTCTCAAC ACAAATCATCCACTCCGATTCTCACTAACGAAATCAGAGATTTCTCTTCTGATTCTCTGAATCTCAATCTTTCTTCACTC ATCTCTTTCAATTCAATTTCACCATCATCCTCTTCTTCAATTCATTCATTTGATTTTGACTTTTTCGGATCCAAATTTCA ACGATTTTGTCTCTGCCTCCATAGAAACAGAGTACGAATGGGGGAAGAGGTGAGGATGATGGATGAAGAGCGTTTGATGG AGTGGGAGAAGGGTCTCCCAAGCGTTCACGATCTAACTCCGCTTTCTCAGCCGCTGATCCCGCCGGAGCTCGCAACCGCC TTCAGCATCTCGCCGGAGCCCCGCCGCACACTCCTCGACGTCAACCGCGCATCCCGCAACACGCTCTCCATCCTCCGCAG CGGTGGAGCCCCACTCCAGGCTCTTTCCTCCTCCGACGAGGAGGGCGAGGGCGGAGGTGGCGGAGGTGAGGAGGACGACA CCACCGATCGCGACGGGTCGGGTGGGTCAGGGTCACGGAAACAGAGGAAGGTGGATTGCGCGGCGGAGGAGGCTGACTCG GCGGTTCGGACGACGGATACGGCGACGCTGAAACGGCCGCGTCTGGTGTGGACACCGCAGCTGCATAAGCGGTTCGTGGA CGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATCATGCAGTTGATGAACGTGGAAGGGTTGACCCGAG AGAACGTGGCGAGTCATCTTCAGAAGTACCGGCTGTACTTGAAGAGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTTCC TCCGATCATCTCTTTGCTTCCACCCCTGTTCCTCAGAGCTTGCATGATTCTGCTGCTGCTGCTGTTGCTGCAACTGCACA TTCAAATTCGCATTCACAAACACATTCCCATTCACATGGACATGGGAATTCTTCTCACCTTCCTGTTCCGATTCCCATGC CTTATCCACCTCCGATGATGTCTATGCCCTTCCATGGTATGCCTCACCTGCATCATGGCCATGGACACATGGGTATGCCG CTTCCTTCTTCCTCTGCCACCTCCTCTTATCGCTCTCAATACCCCTTTAACATGTTGCACCAGAGGGATTGGCCTCACCC TCATCTTGCTCCTAATGATAATAAATGAAAGCGGTTCAGATCAATTCAGCTGCAATTACTCTCTATTTTTATACAGGTTA GCAATTTAGTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTATATAGAACAGAACTATCTATATTGATTG ATTGTGGTTATTTCTACTTCAAGCACATTATAGTTTGAGTAACCATTCCTGAGCCCATACTTGATGGCTAATTATGATGA TTATAATGTATTTTGTTGTGTGTATGAATTATGTTAATGTATCTTGGGATGTGGAAGAATTGAATGTTCTGTTTCCTATT TCTTTGTTAGTATGGCTTGTGAATTTTGAATGAAGTGAGATGAGCAATGAGCATGTTTTTCCTTCATTCTGTTGTTGAGT GCAATATGCTGAGGTATACTGAATGATTAGGTGATCAATTTAGAGAAAATGACTGGTGGGTAACTTTGATGCTGTTATTC ACTGTTCTGATATATCAACAGATTATCTATCCATCTGAAATGAAGTGCAATGATGCACTAGCTTGATGTGTCATCCTCAG ATGGTAAAACTATATACTGAATGCCCCCATCCTTGATATGATGTAAATTTTCAGTTACTTTTCCCCCGCGATGTAACATG AGTATCTTTTGGTTGAAGATGAGATTTGGTCTTTGTTTAAATAATGTTTTACCTTAATCTTTATTGTCTAATATAGAAAA TATGTTTCATTGGACCTTCTTGTGATACTTAGGTTTTCTTTTAGGAGGCTAGGTATGTATATCTTCATTAGAATTTATAC CATCATGTGTAGAGTCTTCAACATTTTCTACTTCTAACCCCTCATTGACTGAGTTCTCATGCTATCAAATTTGCTATTTT AAGGCTGAAGAAATCATTAATTTTCTGTGTTGTCTCTTTTGTAGATTCAAAAGTATTCTTGAGGAAGCATATGGAGACTT TAAGGAGCTAAATTACAAGCTTGCATCAGTAATATCTATCATGTGCTTCCTTGCACACATCTCTTACTCCTGTTACCTAA TTGTAGGAGGAGAATTCTGGCATGTTTCTTCTGGACTACTTGGAGAGCTGATTCTATAGTAAAAATTCTTAACTAGCTCT CGGATTCATACATCATGAGTGCTATTATATTATGAAATCCTGAACATGTTAACCTTTTTTTCAGAACCATTGGAAATTTG AATAAAAGAGAGACTGAACAACAGTCAGCAAACATTTGTTCCATGTCACTCTGGCATTTGTGTTTCTATACCTTAAAAGT TATTCCTTAATGTTAGAAATGTGGGAATGGAACGAGATTTGTACTTTGTATATTTATAGAGGCACATCATATACACACAT ATAGAGAATACTTGTTTTACCCATGAGACTCAGTTGTCTGAGTAATTTTCTTGTCCAAGTTTACTTGGTTTAGAGGGTAG TATGCATTCTAACGAGTAGAGGCACAAACATGTTTTGATCAAGATAAATAGGAGCTTGAGGAAGACCGATCTATACAGTT TGTAAGTTTTACTACTTTTTTTTAACTCCGTGGGCAACTTATTACAATTTCTCTGCACTCTCATCAACGCTTTCTTCTTG TGGATAAGGCTTGTTTATACTTCTTTGCGAATTGAATTTCTCATGCTATTTTGGAAGATTTGTTAGCACCCGTACAAAGG AAAGTTAGCATGCATTTTTAAACCAGTAAGCAGGCTCTTCTTATAAAT
CDS sequence (LotjaGi3g1v0490000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGAGGTGAGGATGATGGATGAAGAGCGTTTGATGGAGTGGGAGAAGGGTCTCCCAAGCGTTCACGATCTAAC TCCGCTTTCTCAGCCGCTGATCCCGCCGGAGCTCGCAACCGCCTTCAGCATCTCGCCGGAGCCCCGCCGCACACTCCTCG ACGTCAACCGCGCATCCCGCAACACGCTCTCCATCCTCCGCAGCGGTGGAGCCCCACTCCAGGCTCTTTCCTCCTCCGAC GAGGAGGGCGAGGGCGGAGGTGGCGGAGGTGAGGAGGACGACACCACCGATCGCGACGGGTCGGGTGGGTCAGGGTCACG GAAACAGAGGAAGGTGGATTGCGCGGCGGAGGAGGCTGACTCGGCGGTTCGGACGACGGATACGGCGACGCTGAAACGGC CGCGTCTGGTGTGGACACCGCAGCTGCATAAGCGGTTCGTGGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCG AAGACGATCATGCAGTTGATGAACGTGGAAGGGTTGACCCGAGAGAACGTGGCGAGTCATCTTCAGAAGTACCGGCTGTA CTTGAAGAGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTTCCTCCGATCATCTCTTTGCTTCCACCCCTGTTCCTCAGA GCTTGCATGATTCTGCTGCTGCTGCTGTTGCTGCAACTGCACATTCAAATTCGCATTCACAAACACATTCCCATTCACAT GGACATGGGAATTCTTCTCACCTTCCTGTTCCGATTCCCATGCCTTATCCACCTCCGATGATGTCTATGCCCTTCCATGG TATGCCTCACCTGCATCATGGCCATGGACACATGGGTATGCCGCTTCCTTCTTCCTCTGCCACCTCCTCTTATCGCTCTC AATACCCCTTTAACATGTTGCACCAGAGGGATTGGCCTCACCCTCATCTTGCTCCTAATGATAATAAATGA
Protein sequence (LotjaGi3g1v0490000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEVRMMDEERLMEWEKGLPSVHDLTPLSQPLIPPELATAFSISPEPRRTLLDVNRASRNTLSILRSGGAPLQALSSSD EEGEGGGGGGEEDDTTDRDGSGGSGSRKQRKVDCAAEEADSAVRTTDTATLKRPRLVWTPQLHKRFVDVVAHLGIKNAVP KTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHDSAAAAVAATAHSNSHSQTHSHSH GHGNSSHLPVPIPMPYPPPMMSMPFHGMPHLHHGHGHMGMPLPSSSATSSYRSQYPFNMLHQRDWPHPHLAPNDNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 9 | 282 | 274 | 2.3E-92 | – | |
PANTHER | 9 | 282 | 274 | 2.3E-92 | – | |
MobiDBLite | 66 | 128 | 63 | - | – | |
MobiDBLite | 91 | 120 | 30 | - | – | |
SUPERFAMILY | 130 | 190 | 61 | 1.45E-19 | ||
ProSiteProfiles | 130 | 189 | 60 | 10.061 | ||
Gene3D | 130 | 192 | 63 | 5.2E-31 | – | |
TIGRFAM | 134 | 186 | 53 | 1.5E-23 | ||
Pfam | 137 | 185 | 49 | 1.3E-8 | ||
MobiDBLite | 216 | 252 | 37 | - | – | |
MobiDBLite | 224 | 244 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0490000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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