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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0490300 |
| Transcript ID | LotjaGi3g1v0490300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT5G59250.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic; TrEMBL-Plants: tr|I3SAW5|I3SAW5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0490300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90846751..90849903) extracted from Lotus japonicus Gifu genome v1.2.
AGTCATTATGAGGAGAACTTTGGGCATATTTGTCAAAGTGGGATCTTAACTTAAGTAACATATCAAAGTGTTTATTAAAC TTGGTGCTAATACTTTGCTTCTAGAGCTGAGGCAGGACTAACTAATGATTTGGAACTAATATACAGGGAGCTATGCCTGA TTAATTGTACTTAAGTTACCTTATTCCACTGTCAGAAAAGCATCAATCCTAGCTTAGTCATCAAGCATTGCAAATTTTAA AATATATGAGCTCCTGGTGTGCCTATGTCAATTAATTAGGGCTTTGTTTCAAAATTTAGGTTTTTGTTCCCTGCATTAGG TGGCTTGTTATTTGGTTATGATATCGGTGCCACCTCCGGTGCTACAATTTCACTGCAGGTAAGTTTGTTACTCAATGTCT ATCAATTAAATTTTGTTCTGTTGTTAGTGTGGTAACGTCAGTAATTGATTTTTCATATTTTTTATTTGGATTCACAGTCA CCTGAGCTTAGTGGGATAACTTGGTTCAATCTTTCTTCCATTCAGCTTGGACTTGTGGTATGACTCCTGCATCATAGCTG ACCAACATCTTTCAAATTTATGGAAAAGTCATTGCCATATTTATTAATTAGAATTTAACTCCTAACATCAAATATAGGTC AGTGGTTCCCTATATGGGGCTCTTCTTGGCTCAATTCTTGCATTTGCTGTTGCTGATTTCCTTGGTAAGTTCTTTGGTTA CATATATTAACCAGAAACTGAAGCTTCTTTTGATTCTCATTTTCCTTTCTGAATATATCAACTTTGCTGAAACATTAGGG AGGAAACGGCAACTTATTGTTGCAGCCTTGTTGTATATACTTGGTGGTGCAATCACTGCTGCTGCACCAGAACTTAATGT CCTCTTAGCAGGAAGGCTGCTTTATGGGCTTGGTATTGGTTTGGTAGGCTATGTCGAACCATGACACTTACTGTAATATT GATAATTCCTGCACCATCTTACAAGAGAAATGAATTACAGGCCATGCATGGGGCTCCTTTATATATAGCAGAAACTTGTC CATCACAAATCCGTGGGACTCTAGTATCACTAAAAGAGCTCTTCATTGTCCTGGGGATTCTGGTATTACATTTTTCCTTC TCTGAATTTTTATTTGACTAAATAATTTACTGATGTGGGAACTAAACTATTGTGCAGGGGGGCTATTTTGTCGGAAGCTT TCAGATTAGTTCAGTTGGGGGATGGCGATTCATGTATGGATTTAGTGCTCCAGTTGCCGTGTTAATGGGACTTGGAATGT GGACTCTCCCCGCTTCTCCACGGTGGTTGCTTCTCAAAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAG GCAATTTTTTCCCTGAGCAAATTAAGGGGCCGACCACCCGGTGATAAAGAATCCGAGAGGCAAATAGAAGAGACCCTTGT CTCATTGAAGTCTGCCTATAAAGATCAGGAATCCGAGGGCAATTTCTTAGAGGTTTTTCAGGGTCCTAATCTGAAAGCCT TCATAATTGGTGGGGGGCTAGTCTTATTTCAACAGGTTGTTCCATTTCAAATCTTCAATGCAATGAGTCTTTCCATAATT ATCATAATTATGTTTGCACGCTTCCAGTTTACTCATGTTATATTGAAGGAAATATGGAGAGTTCTTTCTGCTATTTGTCT GACTAGACTCCTTATTACAATAGATAACAGGTCAACCTAGTGTTCTGTATTATGCAGGTTCAATTCTCCAGGTACTTTAC ATTTACACTCTATTGTAAATGAGATTTTCTGTTTTTACATCTTGATCACTTTAGATTATATTCTGTCCTTTATGTCCAGA GTGCTGGATTTTCAGCTGCATCTGATGCTACTAAAGTTTCAGTTGTTATCGGCTTATTCAAGGTATACCTACTTACTTGA ATTTTACCTACCTGAGAAAAGCGACCCCTTTATCACACTGGTAATAACTTGTTTCGTGATTGAACAACATGTAGTTACTA ATGACATGGGTTGCTGTCCTAAAAGTAGATGATCTTGGGAGAAGACCTCTGCTGATTGCAGGCGTCAGTGGCATAGTAGG AATTCAATCAACAAATCCATACAGTACTTCATTGCAACTTGTCAAATGCAAATGGTTATTCCTTTTTTGTATACTTTTGT AGGGTCTCTCTTTAGGTCTCCTGTCTGCTTATTATAAATTTCTTGGAGGATTCCCACTTGTTGCTGTTGGAGCTTTACTT CTTTATGTTGGTTGCTACCAGGTAAAGGTTTTTAAGTCATTGGTCCAGCTTCCTTTTCTTGTCATGTTCAACTTGAATAT AAGTCCTGTTCTGTAGTATTAATTAACTTTGGCCATACAATTGGGACTCTAGGATATAGGCCTCGTTTGGAAGAACTCAT TTGAACTTATCTTATAGCATAAGGGCTAATGTAAGTGTTGAGGAGACCTTATGTAAATACCTATAAGTTGATTTGAGCTT GCTTATTTTCATAAGCTATTCACATTAGCTCATGAGTAAGAGCTTATACTTATCCATAACCTATTTTCAGCTTATTTCAT TAAGTTTATCTAATTAACTTATGAATAAGCCCTTATTTCCATAAGCGCTTAATTAAACTGTTCACCCAAACGCACTCATA GATTTTCATGAAATTCAATTCAGAGACCTCCGTGTCAATAAAAGGAAGAACCTTGCAATAATTCATATTTAATATTACCA CTGTCCTTGAGTCAATGCGGTTTAAAGTGTTGTAGGAGATTTATGCCAAATTGCATTTGTATTGCAGATATCATTTGGGC CAATAAGCTGGCTTATGGTATCAGAAATCTTCCCAATTCGCACTAGAGGACGGGGGATTAGTCTGGCTGTTCTTACCAAC TTTGCTTCAAATGCTGTCGTCACCTTTGCATTCTCACCATTAAAGGTTTTCAATTCTTTTGTTGAAGATAACTTTATATC ATTTTTAACTTTGTCTGAGTGCTTTTGGAGTTTATATCTATGTTCACTTGTTCTACAGGAGCTTCTAGGAGCTGAGAACC TTTTTCTCCTTTTTGGTGCCATTTCTTTAGTGGCACTTCTGTTCGTTATATTTTCTGTCCCTGAGACTAAAGGCTTGAGC TTAGAAGAAATAGAATCCAAAATCTTGAAGTGA
CDS sequence (LotjaGi3g1v0490300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGGGGCTCCTTTATATATAGCAGAAACTTGTCCATCACAAATCCGTGGGACTCTAGTATCACTAAAAGAGCTCTT CATTGTCCTGGGGATTCTGGGGGGCTATTTTGTCGGAAGCTTTCAGATTAGTTCAGTTGGGGGATGGCGATTCATGTATG GATTTAGTGCTCCAGTTGCCGTGTTAATGGGACTTGGAATGTGGACTCTCCCCGCTTCTCCACGGTGGTTGCTTCTCAAA GCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCAATTTTTTCCCTGAGCAAATTAAGGGGCCGACCACC CGGTGATAAAGAATCCGAGAGGCAAATAGAAGAGACCCTTGTCTCATTGAAGTCTGCCTATAAAGATCAGGAATCCGAGG GCAATTTCTTAGAGGTTTTTCAGGGTCCTAATCTGAAAGCCTTCATAATTGGTGGGGGGCTAGTCTTATTTCAACAGATA ACAGGTCAACCTAGTGTTCTGTATTATGCAGGTTCAATTCTCCAGAGTGCTGGATTTTCAGCTGCATCTGATGCTACTAA AGTTTCAGTTGTTATCGGCTTATTCAAGTTACTAATGACATGGGTTGCTGTCCTAAAAGTAGATGATCTTGGGAGAAGAC CTCTGCTGATTGCAGGCGTCAGTGGCATAGGTCTCTCTTTAGGTCTCCTGTCTGCTTATTATAAATTTCTTGGAGGATTC CCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCAATAAGCTGGCTTATGGT ATCAGAAATCTTCCCAATTCGCACTAGAGGACGGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTCG TCACCTTTGCATTCTCACCATTAAAGGAGCTTCTAGGAGCTGAGAACCTTTTTCTCCTTTTTGGTGCCATTTCTTTAGTG GCACTTCTGTTCGTTATATTTTCTGTCCCTGAGACTAAAGGCTTGAGCTTAGAAGAAATAGAATCCAAAATCTTGAAGTG A
Protein sequence (LotjaGi3g1v0490300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGAPLYIAETCPSQIRGTLVSLKELFIVLGILGGYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLK AVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESERQIEETLVSLKSAYKDQESEGNFLEVFQGPNLKAFIIGGGLVLFQQI TGQPSVLYYAGSILQSAGFSAASDATKVSVVIGLFKLLMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAYYKFLGGF PLVAVGALLLYVGCYQISFGPISWLMVSEIFPIRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAISLV ALLFVIFSVPETKGLSLEEIESKILK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 344 | 344 | 3.9E-85 | – | |
| ProSiteProfiles | 1 | 333 | 333 | 30.2 | ||
| PANTHER | 1 | 344 | 344 | 2.3E-155 | – | |
| PANTHER | 1 | 344 | 344 | 2.3E-155 | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| CDD | 1 | 340 | 340 | 2.02484E-131 | – | |
| SUPERFAMILY | 3 | 341 | 339 | 4.19E-39 | ||
| TIGRFAM | 4 | 340 | 337 | 7.9E-73 | ||
| Pfam | 4 | 341 | 338 | 4.7E-69 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 26 | 45 | 20 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| Phobius | 51 | 70 | 20 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 71 | 165 | 95 | - | – | |
| Coils | 113 | 133 | 21 | - | – | |
| Phobius | 166 | 182 | 17 | - | – | |
| Phobius | 183 | 187 | 5 | - | – | |
| Phobius | 188 | 207 | 20 | - | – | |
| TMHMM | 188 | 205 | 18 | - | – | |
| Phobius | 208 | 213 | 6 | - | – | |
| Phobius | 214 | 234 | 21 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 235 | 239 | 5 | - | – | |
| Phobius | 240 | 267 | 28 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 268 | 278 | 11 | - | – | |
| Phobius | 279 | 298 | 20 | - | – | |
| TMHMM | 279 | 301 | 23 | - | – | |
| Phobius | 299 | 309 | 11 | - | – | |
| Phobius | 310 | 329 | 20 | - | – | |
| TMHMM | 310 | 329 | 20 | - | – | |
| Phobius | 330 | 346 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0490300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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