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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0491100 |
Transcript ID | LotjaGi3g1v0491100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras-related protein, expressed; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I3T2Y2|I3T2Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0491100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90909500..90914079) extracted from Lotus japonicus Gifu genome v1.2.
AACACGACGCCGTTCCTCCTAATTCTTTTTATTTTTTGAAATTATACCACTCAATAATAATAATAATAATAACGACAAGT AAATTAAAAAGAAACCCCCTTTTGCTGTCAATTAATTAAAATTAAAAAGAAATAAAATAAAAATTGATCCTTATTTATTC GCCTTTCCAAGTGCTTTCTCACTCATCGATATTTCCGTTTTCTCCCCCCATTGGCCAATTCGGCCACCCTTCTTCTTCTC CTTCTTCCTCCTCTCCACCCTCCGGTTCGTGCAGTTACCCCAACCGTTCCCTATTACAGTCTCTCAAGTTCGCTTCACTC ACACAAGCAAAACCTTCACCAAACGCATTCATCTCAATTCGTTTCCTCTCTCATCAATCAATCCATTTCACGGTGAGTTC TTTTGCTTTCCGATTCAGTTCCTAGATCTGTTGTTTCGTTTCGATTGCGCGTTTTTGTTTTTCTGTTACGTGCTTGTGAT GGATCTGAATGAATCTTCGGTGGTGGATCTGGCAGGTTCGAGAGATCGGAGAGGGGAAGAAGTTATGGCGCACAGGGTGG ACCATGAGTATGACTATCTCTTCAAGATCGTCTTGATCGGAGACTCTGGTGTCGGCAAATCCAATATCCTCTCCAGGTTT ACTCGGAACGAGTTCTGCTTGGAGTCCAAATCTACTATTGGTGTTGAATTCGCCACCAGGACTCTTCAGGTATTCCTAAT TACTCCTTCTGTGAATGTGTTAATCGTTGAATGATCATTTGCCTTTCAAATTTCTGGATTTCGTCATGCTATTTTTCCTG ATACGAAGGTGTTTGCATTTATAGGTTTTCGAGTTTGATCAACTTATTCCTATTGTTTTGTTTTGTATTGTTGTTCAAAA GCATTGGTTGGTTAGAAGCTAGAACGTTTAGTTCAGATCCTCTTCTGAGGAGGAACTAAGTGTGCTGTAGGAATGATGAT TTTAGCTTTAAGTGCTGTTATCAAGGTTTTAAATCACAGTTTTGAGGTCTTAGTGATCATAATTATGGCCACATTGGTAA TATTTTTTCAGGATTTTTTACTATCTCAGTTTGTGACTTGACTGTGACTGCAATTCGAATGTTGTGTGTGTTCATGTGAT CAATTGGAGGCCTGATTTGTTTTATCTAAAGATAGACAGCTTCTTAGATGAAAATTCAGATTTGGTGTCGAATACTGATG ACTGCATTGATCTCAAGAGTCGAAACATAAAACTAATGTTATATGGTGGATGCTATTGCTGAGAGTGAATTTTTGTTGTT GTGTTGAATGTGTTTTGAATTTGATTATGTGCTGAGTTTTATCTATGGATAGGTTGCTTCTTAGATGAAATTCAGATTTG GCGTTGAACAAATGATTTGAATGCATTGATCTTAAGTGTAAAAACATAAATTAATGTTACATTGTGGTTGCTGAGAGTGA ATTTTGTTGTTTTGTTGAATGTGCTTTGAATATGCTGATGTGCAGAGTTTTATATATTGGTCATTGTTTGTTTGACAGCA TTGCTGATGGTTGTTTCTTTATCTTACTGTGCAGGTAGAGGGAAAGACTGTTAAGGCACAGATCTGGGATACAGCAGGTC AAGAGCGATATCGCGCCATTACCAGTGCTTATTACAGAGGAGCTGTTGGTGCTCTCCTTGTATATGACATAACTAAGAGG CAAACCTTTGACAATGTCCAGAGGTGGCTGCGTGAATTGAGGGACCATGCGGATTCTAACATAGTTATCATGATGGCTGG AAATAAATCTGATTTGAACCATCTTAGAGCTGTTTCGGAGGATGACGGAGGAGCGTTGGCAGAGAAGGAAGGTCTCTCAT TTCTTGAGACATCTGCACTGGAAGCAACCAACATTGAGAAGGCATTCCAAACCATATTGACAGAAATCTACCATATTGTT AGCAAAAAAGCACTTGCTGCTCAGGAAGCAACTGCTGGTGCCTCAGTTCCTGGTCAAGGAACCACTATCAATGTTGCTGA TACTTCTGGGAACACAAAGAAAGGTTGCTGTTCCACTTGATGTGACATTTTGTGGAAAAACCGTTGCTAGCGGATAGTAT TTTTTTACCCCCCAATTCTGTTTTACCCCTTTCTCTTATTTTTGTTCTTAATGGGTGAGAGAGAAACTTGTAGAGTACAT TTACTTCTTTGAGTTGCAATGAGGAAGCTTGTGAAATTTTAAAAACCAGAAGTGTTTAGTTTCTTTCTTTCGTATTATGA TAATTTTAATTTCTCGTGAATTGATGTAATATTGGCACTGACGGATATTTGTTATATAGCGTGGTTAATGGGAATCTGAC ATTTCAGAGAGGTCATGTTATACTTTCGTCTGGTTTTTGTTAATTTGTTGTTAATAGGCTACCATTTGAGAGAGCTTGAC AAAATCTATGATCATCTCGTTTGCAATTTCTCCTTTCACCATACAAATCCGTTAGCTACTGCTGGAAGTAAAATTGAGCA CATAATCTGCAAATGCATAGTTCCAAGAACAACTGAAGTAATTGGCTAGTGATTCCTTGTTAATTTAACTGCCACAATTT TTATTTTGTTAATGAGTTAGGACCTTGAAGTGTTTGCATTTTCATGTATTTGAGTCGTTTACTGTCATAACAGGTTAGAA TAAAGCAAGTATTGTGAAAATCTATATGAGGATGCATCAATCAAGTAGCAAAAGGAACGTAGCCTTACTCAATTTGAATG GTTACATGTTGTATTTGATATGATTTTTCACAGTAATGCTTAATGGTGCCTAGTAAATCAACAGAGTTGATGCCAGGCTC AGCTACTACATGGCAAGACAGAACATTTTTACCAACTGTTATGGCCCAAATGTGCAAGTCATGGACATCCAGCACTCCCT TAATACTTCTAAGACCATTTTCTACCTGAATGACATTGATCTCACTAGGTGCACCCTCTGTCAGAATGCCATATATATTC CTAAGCATGGGTACAGTAGTACTTAAGGACAAAACAGAGAATAAGAGAGTACATAGAAGGTCAACTATAAACCACTCTGG TTTTGCCCATATTACAGCTCCGCCAATCATCACTCCAATAGATTGAATCATATCAGCCATGACATGCAAATAGGCCCCTT GGAGATTAAAGTTCAAGACACTAACATTTCTCTGGCTACCTGGAAGCATGCTCAGGTTCTCCTCCTCATCAGTCAATTTA GCTAGCTCCACTTCCTCCATCCCATGATCATGATCTGAGTCTCCACAGAACTGACTATGACTATGGCTATGGCTATGGCT ATTGCTATTGCTATTGCTATGGCTATGACTATGGCCATGATCATCATGATCATGTCCATGATCTGAGTCTCCAAACCCAT GATGATGATGATGATGATGACAATGATCATTCCCTCCAAAGCCATGATGATGATCATGACCAAGCCATACAACCATGATA AGGTTAAGAACAAACCCAAATGCTGCAATTGCAAACATGAGCATTCCATTCACCCTTTCATTTTGGTGAAGAAGTCTACC AACAGCTTCATATATCAAATAACCAGATATCATCCAAATAAACTGCACAGATAAAAGGGCACCCAAAACCTCAAGACGAT TGTACCCAAAAGATTGATGCGGCGTCGCCGCCCAACCCGAAGCCCACACTGCAAAGAGAGAGACAGAGAACCCAGCAATA TCAGAAAGCAAGTGAGCAGCATCACTGATGACAGACAAACTGTGAGCTTTTACACCCCCTATAACTTCCACAACCATAAC AACAGCATAGAAAGCTATGAGTAAAGAAAGTTTCCTTGCTGACTTTGATGACTCTTTAGATGCCAAAACACTGTGTTCCT GTCTGGAAAAAGCACATACAGAATTGCAAGACAGTCCCTTTGTCATAGGAAGAATCTCAACCTTCTCAGAGACAATTGGG ATCCCAATTTCCTCCATGGAAATTGCTTCCAAGACTAAGGCTTTCTCAGGTTCCATAGGCTTCAACAAACAAACTGGGCC TTCACAAAACACACAAATTATGTCCAAAATTAAAGAATAAATTGCATTTTGAATATTCTTGGTGAGTAAAATACAAATAT AAAGTTGCAAAATGAACAAAGAGGTGAGAAAAAAATAAAGAAATCGTACCAGGACAAGCAATTGATGGAAGTAATGAGCA GCCGGGAGACAAAATTGAATTGGAAATTCAGAAACTTTGTAGCTCAAGTGGGAACGAGGGGCTACGTTGGAAGATTCGAA AAATTATAAAAAAAAAAAAAAAGGGAATCTAACGGGACAACACGACGCAACTCAGAGATTCGTTGTTGATGTTAACGACG GCATGTTGTCCCGGTGAATATCCAAGGGGGCAGAGTCAGCTGCTAACAACAAACTACCCTATGGATATGGATTTCCGACA GAGAGAATTGGGATAGACTAAAACCTAATCTAATCTCTGGTGTAAGAGAACTGTTTCGGGCTGGTAATGGGTTGTGTCTC TTCATGACAACACGACATGTTTGTAGTGGTACCACCATCCCACCATGATACTACTTTACTAATTTTTCATTTTAGGAAAG TCAAAATGAATATGATCACT
CDS sequence (LotjaGi3g1v0491100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCACAGGGTGGACCATGAGTATGACTATCTCTTCAAGATCGTCTTGATCGGAGACTCTGGTGTCGGCAAATCCAA TATCCTCTCCAGGTTTACTCGGAACGAGTTCTGCTTGGAGTCCAAATCTACTATTGGTGTTGAATTCGCCACCAGGACTC TTCAGGTAGAGGGAAAGACTGTTAAGGCACAGATCTGGGATACAGCAGGTCAAGAGCGATATCGCGCCATTACCAGTGCT TATTACAGAGGAGCTGTTGGTGCTCTCCTTGTATATGACATAACTAAGAGGCAAACCTTTGACAATGTCCAGAGGTGGCT GCGTGAATTGAGGGACCATGCGGATTCTAACATAGTTATCATGATGGCTGGAAATAAATCTGATTTGAACCATCTTAGAG CTGTTTCGGAGGATGACGGAGGAGCGTTGGCAGAGAAGGAAGGTCTCTCATTTCTTGAGACATCTGCACTGGAAGCAACC AACATTGAGAAGGCATTCCAAACCATATTGACAGAAATCTACCATATTGTTAGCAAAAAAGCACTTGCTGCTCAGGAAGC AACTGCTGGTGCCTCAGTTCCTGGTCAAGGAACCACTATCAATGTTGCTGATACTTCTGGGAACACAAAGAAAGGTTGCT GTTCCACTTGA
Protein sequence (LotjaGi3g1v0491100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALAEKEGLSFLETSALEAT NIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 1 | 178 | 178 | 0.0051 | – | |
PANTHER | 4 | 214 | 211 | 2.7E-123 | – | |
PANTHER | 4 | 214 | 211 | 2.7E-123 | – | |
SUPERFAMILY | 8 | 178 | 171 | 3.56E-59 | ||
ProSiteProfiles | 8 | 214 | 207 | 35.888 | – | |
Gene3D | 10 | 199 | 190 | 5.6E-68 | – | |
SMART | 10 | 176 | 167 | 9.4E-28 | – | |
CDD | 10 | 174 | 165 | 4.59878E-129 | – | |
TIGRFAM | 11 | 170 | 160 | 1.4E-40 | ||
PRINTS | 13 | 34 | 22 | 1.3E-41 | – | |
SMART | 13 | 176 | 164 | 7.3E-113 | – | |
Pfam | 14 | 174 | 161 | 7.2E-61 | ||
SMART | 15 | 172 | 158 | 5.0E-11 | – | |
SMART | 18 | 216 | 199 | 1.9E-8 | – | |
PRINTS | 36 | 52 | 17 | 1.3E-41 | – | |
PRINTS | 54 | 76 | 23 | 1.3E-41 | – | |
PRINTS | 116 | 129 | 14 | 1.3E-41 | – | |
PRINTS | 151 | 173 | 23 | 1.3E-41 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0491100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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