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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0492500 |
Transcript ID | LotjaGi3g1v0492500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT5G12870.1 myb domain protein 46; Swiss-Prot: sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46; TrEMBL-Plants: tr|I3SHZ9|I3SHZ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91031733..91034969) extracted from Lotus japonicus Gifu genome v1.2.
ATCATTCCATTTGGGAGAGGAAATTACACAATATTGATTGATAAATGTACAATGAGGAAGCCTGAGCCAAAAAACAACAA CTCCAATATGACGAAGCTTAGAAAGGGGTTGTGGTCACCAGAGGAAGATGACAAGCTCATGAACTACATGTTAAACTCTG GACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGTTTGCAGAGATGTGGGAAAAGTTGTCGGCTTCGATGGATCAAT TACTTGAGGCCTGATCTTAAACGAGGTGCTTTTTCGCCTCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGG AAACAGGTCCACTTTTTTTTTTTCTAACTCTCATAAATTTATCCATCGCATTACCAAATTTGGATCATCCTTCATCCTTG CATCATTAACATTGCAAAAAGTACTATTGACAATTGATTAACTACTTTACTAACATGCTGCATACGTATTATATATGTTA ACCAAAACATACATGTGTGTACTTATCTCTCTAAGATCAACTTCTCATTTATCATTGAAGTGTATTTAATGGCAACATTC ATGTCAAGTGTTACATTAATTAGAAATATGACTAATAAAATATTTTTAATGAAAGGAAAATCCTCATCTAAATTAACTTT TGAGGTAGACTTATTTTATTAATCCACTAGTTCCTTCTAAGTATAGGCCATCATATAGTTCTTAATTGTAGACGTCATCT CTATTTCAAAAGAATCAAAACACTAATGATATTTAAACATAAATAATGTATATACATATATAGTAGACATTCCATTTTTT CTTTTATATATCTTTCTTCTTATCATATATATAGATATAGCATTTATGATTTATTCACTTCTTTTCTCTTCTCACTATAG ATATCAGTTAGATGTCTCTATTATGTGGATCTCTATGCATAATTTTCCATTTGAAAAGTGTGATGGATACGTGTGAGCAT TATTTCCTTAATTGGGAGTGTAAAAGTTCTATGCATAAAGTCAATAAAAAAGAACTCATCAAAATTGAAATGATAAAAAT TGAAATTCATGAAAGAAGTTAATTTGTTAGATAGATTTTTTTAAAAGTTAAAAATAGATATTATATAAATAAGAAATGTT GAGAAACAAAATCTCTCAACATGGGTACAGTAACCTAGCCAGCATAACACTGGACAAAATTCAGCTCATATAACAAAAAC CTTCCACCCACACGCAGAAGAGCGTGCTAAAAACCTAGTACAAAACCCCAAGCGACTACACCTCTAAAAATATCTTCATA AAAGTCAAAAAACGACGATAAATATGACTGAAGGAAACAACCAAGCCGCTCGACACCTGCTACAAAGACCAATTCAAAGG AGCAAACCAATGATTGATTAATTTTTGAAAAGAGAAAAAACTGAATCTTATTTATAAGAATTCGAGTTATGCTTAACTCT ACATCAAAAATTAACAAAAATTAACTTATGGATGAGAGTTATACCATACCATTAATAAGAACTATTTTAACTTAGTCACA TCTCTATCTCTAGTAAATATAAGAGTTATAAATATTATTTAATACCATTGTACATCTATATTTGTTAACCACTTAATTTG TTAGCCACTTGAGTAGGGTGCATGCGTTTGTGGTACTGAAATATATGAATCATTTGTGAAGAATTCTCAAATCGCATGCA ATCATTTTCACGTTGAAAAATGCCGATATCTATAATTAAGACATAGAAGTCGAAACACATGCATCAACTAATTTTATATC AACTGTGCTTATTCTAAGATAGCTTGTAGTTGTATTTATTACTTAAAAATGGTATCTTTGCATCAATTTTAAGACGGACA AAATTTTCAAAAAATGTTTGATAAGTCTTTGGGTGTCTAAATCTAGTCTTCCTTAGTCATGATATGGAACACATAATTCA AAGTTCAAAAATACATGCAAAACACGATTGAATAAAATATAATAATATATAGACAAGTCTTTTGTAGAAGCAAAAAGGAC TAACTGAAAACAACATATAGGCATTGTGATTCGTCTGTATCTCAGGACTTCGGAGTTGAAGACACTCCATTACATTTATA TATACATGTATCGTTTGAACAAAAAAAAAATTATTGCTTCCATGCAAAGCATGCATTCATTTTCAGTAATAGACCAATTG CAAAAAAAAAATGCAATCACGTACTCATGAATTCAATTTAACTTATGCCATGTATTAAGCCAACATTGAATTGTGTTTCA TTTTTAAAGATGGTCTCAAATTGCGGCACGCTTACCTGGGAGAACTGACAATGAGATTAAGAACTTTTGGAATTCCACAA TAAAAAAAAGACTCAAGAACTTGCCTTCACCAAACGCAAGTGAGTCCTCATGTGAGCCTAACAAGAAAGACCATAACAAC AATGGAGGTTTCAGTTTCAATTCCACACAGCAAGATGTTGATTTTATTATGCCTATGTTCATGACTTCATCTCCATCACC AACAACAACACAAGCCACGGTTCTCAACACCATAATTGAGAGGTTGCCTATGCTAGAGCATGGAATTATGAACATGCCAG CTTCCGGTGCCGGTGGATTCTTCAACGCGCCACCACGCTTCTTACAAAGTGAAATTGACAACGACCACAACAACATCAAA GGTCTTTATTTGGAAAACGGAGTCTTTGAAGGGGTTCCTCCTCTGGAGAGTGTAATTAGGACTACTACTACTTCTGACCA TGACCTAAAAGTGGAGAATAAGGGAGATACTAACTATAGTTGTTACTTTGATGACATAAACAACATCGTTAACAATTGCT ACATTAGCAACAATAATAAGAGACCTCATGAAAATAGAGGTGGGGTGCAGGAGGATTTGTGCCCAGAAGAGTTAACCATG GGTGAGTGGGACTTGGAGGATTTGATGAAAGATGTTGCGTCCTTTCCCTTTCTTGATTTTTCAAGCTGATCCAAAGTCCA ACCAAGTTACCCTTCTTAAGGATCTAATGTACAGCCATGTCTAAGCATTACATTATGGTTTGGGGTGATTTCCTTAGAAA AAACGGTGTAATATTAACTTGTATTTTTGCCATTATACACTGATTAATTAATAACAAGGTATAGGTCTCAAGAATAAAAG TCAATCATGTATATCTGGATTGGTGATCATGTAATTACGAATTTCAAAGTTGTCATTGGGTACACCCTTTATATCCAGAA GCCATTGTAGTTCTTTTTTTTCTTTTCAAAGAAGCCA
CDS sequence (LotjaGi3g1v0492500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGCCTGAGCCAAAAAACAACAACTCCAATATGACGAAGCTTAGAAAGGGGTTGTGGTCACCAGAGGAAGATGA CAAGCTCATGAACTACATGTTAAACTCTGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGTTTGCAGAGATGTG GGAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCTTTTTCGCCTCAAGAAGAGGAA CTCATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCACGCTTACCTGGGAGAACTGACAATGA GATTAAGAACTTTTGGAATTCCACAATAAAAAAAAGACTCAAGAACTTGCCTTCACCAAACGCAAGTGAGTCCTCATGTG AGCCTAACAAGAAAGACCATAACAACAATGGAGGTTTCAGTTTCAATTCCACACAGCAAGATGTTGATTTTATTATGCCT ATGTTCATGACTTCATCTCCATCACCAACAACAACACAAGCCACGGTTCTCAACACCATAATTGAGAGGTTGCCTATGCT AGAGCATGGAATTATGAACATGCCAGCTTCCGGTGCCGGTGGATTCTTCAACGCGCCACCACGCTTCTTACAAAGTGAAA TTGACAACGACCACAACAACATCAAAGGTCTTTATTTGGAAAACGGAGTCTTTGAAGGGGTTCCTCCTCTGGAGAGTGTA ATTAGGACTACTACTACTTCTGACCATGACCTAAAAGTGGAGAATAAGGGAGATACTAACTATAGTTGTTACTTTGATGA CATAAACAACATCGTTAACAATTGCTACATTAGCAACAATAATAAGAGACCTCATGAAAATAGAGGTGGGGTGCAGGAGG ATTTGTGCCCAGAAGAGTTAACCATGGGTGAGTGGGACTTGGAGGATTTGATGAAAGATGTTGCGTCCTTTCCCTTTCTT GATTTTTCAAGCTGA
Protein sequence (LotjaGi3g1v0492500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKPEPKNNNSNMTKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEE LIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLPSPNASESSCEPNKKDHNNNGGFSFNSTQQDVDFIMP MFMTSSPSPTTTQATVLNTIIERLPMLEHGIMNMPASGAGGFFNAPPRFLQSEIDNDHNNIKGLYLENGVFEGVPPLESV IRTTTTSDHDLKVENKGDTNYSCYFDDINNIVNNCYISNNNKRPHENRGGVQEDLCPEELTMGEWDLEDLMKDVASFPFL DFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 20 | 20 | - | – | |
PANTHER | 11 | 317 | 307 | 5.6E-134 | – | |
PANTHER | 11 | 317 | 307 | 5.6E-134 | ||
ProSiteProfiles | 13 | 65 | 53 | 14.441 | ||
Gene3D | 15 | 71 | 57 | 1.8E-17 | – | |
SUPERFAMILY | 16 | 112 | 97 | 1.13E-27 | ||
SMART | 17 | 67 | 51 | 2.4E-9 | ||
Pfam | 18 | 65 | 48 | 5.8E-12 | ||
CDD | 21 | 65 | 45 | 2.34287E-8 | ||
ProSiteProfiles | 66 | 120 | 55 | 25.918 | ||
SMART | 70 | 118 | 49 | 4.9E-16 | ||
Pfam | 71 | 114 | 44 | 2.5E-14 | ||
Gene3D | 72 | 144 | 73 | 3.4E-20 | – | |
CDD | 73 | 113 | 41 | 6.90595E-12 | ||
MobiDBLite | 122 | 145 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0492500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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